ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart06g02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_191786.1| Oryza sativa (japonica cultivar-group), predic... 52 0.002
2dbj|AK102023.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.002
3dbj|AK073213.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.002
4dbj|AK060700.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.002
5emb|CR559943.6| Zebrafish DNA sequence from clone CH211-200O8 in... 44 0.39
6emb|BX649289.11| Zebrafish DNA sequence from clone DKEY-231H5 in... 44 0.39
7dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.39
8dbj|AP003738.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.39
9gb|AC167247.2| Mus musculus BAC clone RP23-418C19 from chromosom... 42 1.5
10gb|AY596534.1| Saccharum officinarum clone SCJLLR1104A08, comple... 42 1.5
11gb|AC108870.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.5
12gb|AC128661.3| Mus musculus BAC clone RP24-567N23 from chromosom... 42 1.5
13dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
14gb|AY107714.1| Zea mays PCO121192 mRNA sequence 42 1.5
15gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.5
16gb|AC147138.3| Mus musculus BAC clone RP24-230H23 from 7, comple... 42 1.5
17gb|AC146616.3| Mus musculus BAC clone RP23-9A18 from 7, complete... 42 1.5
18emb|AL929424.7| Mouse DNA sequence from clone RP23-24F19 on chro... 42 1.5
19ref|XM_482330.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.0
20gb|AC104414.8| Mus musculus chromosome 3, clone RP23-99I7, compl... 40 6.0
21gb|AE014828.1| Plasmodium falciparum 3D7 chromosome 14 section 1... 40 6.0
22gb|AC119899.8| Mus musculus chromosome 5, clone RP24-235E5, comp... 40 6.0
23gb|DQ474300.1| Uncultured ectomycorrhiza (Cenococcum geophilum) ... 40 6.0
24gb|AC129330.4| Mus musculus BAC clone RP23-61B8 from chromosome ... 40 6.0
25gb|AC134397.6| Mus musculus chromosome 13, clone RP23-265J12, co... 40 6.0
26gb|AF014939.1| Caenorhabditis elegans cosmid ZC132, complete seq... 40 6.0
27gb|AC073320.8| Homo sapiens BAC clone RP11-306G20 from 7, comple... 40 6.0
28gb|AC113307.12| Mus musculus chromosome 3, clone RP23-437A2, com... 40 6.0
29gb|AC124502.4| Mus musculus BAC clone RP23-414G6 from chromosome... 40 6.0
30emb|CR678388.17| Zebrafish DNA sequence from clone CH211-125I3 i... 40 6.0
31gb|AC151424.15| Medicago truncatula clone mth2-101c17, complete ... 40 6.0
32emb|AL450107.11| Human DNA sequence from clone RP11-495K23 on ch... 40 6.0
33emb|AL139347.10| Human DNA sequence from clone RP5-871P9 on chro... 40 6.0
34emb|CR555306.1| Azoarcus sp. EbN1 complete genome 40 6.0
35gb|AC119206.13| Mus musculus chromosome 5, clone RP24-189M4, com... 40 6.0
36emb|AL929358.1|PFA929358 Plasmodium falciparum strain 3D7, chrom... 40 6.0
37emb|CR407702.15| Zebrafish DNA sequence from clone DKEY-171M10 i... 40 6.0
38emb|AL845302.4| Zebrafish DNA sequence from clone CH211-108C6 in... 40 6.0
39gb|AC093497.2| Drosophila melanogaster 3L BAC RP98-1H12 (Roswell... 40 6.0
40gb|AC091209.3| Drosophila melanogaster 3L BAC RP98-3G6 (Roswell ... 40 6.0
41gb|AC157645.8| Medicago truncatula clone mth2-70l21, complete se... 40 6.0
42gb|AC087274.8| Homo sapiens chromosome 8, clone RP11-681J6, comp... 40 6.0
43gb|AC084865.3| Homo sapiens chromosome 7 clone RP11-437L1, compl... 40 6.0
44gb|AC013724.8| Homo sapiens BAC clone RP11-319E12 from 4, comple... 40 6.0
45gb|CP000123.1| Mycoplasma capricolum subsp. capricolum ATCC 2734... 40 6.0
46gb|AC153363.4| Mus musculus BAC clone RP23-5I6 from chromosome 9... 40 6.0
47gb|AC018499.3| Homo sapiens chromosome 3 clone RP11-267L16 map 3... 40 6.0
48gb|AC018818.5|AC018818 Homo sapiens chromosome 3 clone RP11-266E... 40 6.0
49dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 40 6.0
50emb|BX649639.4| Zebrafish DNA sequence from clone CH211-102G22 i... 40 6.0
51emb|AJ580822.1|LCO580822 Lotus corniculatus var. japonicus gene ... 40 6.0
52gb|AF213505.1|AF213505 Brassica napus putative cell-wall P8 prot... 40 6.0
53dbj|AK099936.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.0
54gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, c... 40 6.0
55emb|CT025569.14| Mouse DNA sequence from clone RP24-68J22 on chr... 40 6.0
56emb|BX942844.18| Zebrafish DNA sequence from clone CH211-11M18 i... 40 6.0
57gb|AE003532.3| Drosophila melanogaster chromosome 3L, section 53... 40 6.0
58gb|AC127691.4| Mus musculus BAC clone RP24-216M10 from 9, comple... 40 6.0
59gb|AC122542.3| Mus musculus BAC clone RP24-572J16 from 9, comple... 40 6.0
60dbj|AP005665.1| Lotus japonicus genomic DNA, chromosome 3, clone... 40 6.0
61gb|M84006.1|HALHSP70 Halobacterium marismortui heat shock protei... 40 6.0
62gb|AC018502.6| Homo sapiens chromosome 3 clone RP11-327H17 map 3... 40 6.0
63gb|AC018495.5| Homo sapiens chromosome 3 clone RP11-193K15 map 3... 40 6.0 
>ref|NM_191786.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1353

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 74/90 (82%)
 Strand = Plus / Minus

                                                                        
Query: 344  cacctcatcgatctcctcctcgacgcaaaacgtccggcactcgtcgctgcagaacgcctt 403
            |||||| ||||||||||| |||| | |   | ||| |||||||| ||||||||| |||||
Sbjct: 1155 cacctcctcgatctcctcatcgatgtagtccctcctgcactcgttgctgcagaatgcctt 1096

                                          
Query: 404  ctcgcccaggtacatgaaggtatccatgtc 433
            ||| ||||| |||||| || ||||| ||||
Sbjct: 1095 ctctcccagatacatgtagatatccctgtc 1066
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>dbj|AK102023.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033080J22, full
           insert sequence
          Length = 1285

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 74/90 (82%)
 Strand = Plus / Minus

                                                                       
Query: 344 cacctcatcgatctcctcctcgacgcaaaacgtccggcactcgtcgctgcagaacgcctt 403
           |||||| ||||||||||| |||| | |   | ||| |||||||| ||||||||| |||||
Sbjct: 943 cacctcctcgatctcctcatcgatgtagtccctcctgcactcgttgctgcagaatgcctt 884

                                         
Query: 404 ctcgcccaggtacatgaaggtatccatgtc 433
           ||| ||||| |||||| || ||||| ||||
Sbjct: 883 ctctcccagatacatgtagatatccctgtc 854
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>dbj|AK073213.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033014N20, full
            insert sequence
          Length = 1420

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 74/90 (82%)
 Strand = Plus / Minus

                                                                        
Query: 344  cacctcatcgatctcctcctcgacgcaaaacgtccggcactcgtcgctgcagaacgcctt 403
            |||||| ||||||||||| |||| | |   | ||| |||||||| ||||||||| |||||
Sbjct: 1083 cacctcctcgatctcctcatcgatgtagtccctcctgcactcgttgctgcagaatgcctt 1024

                                          
Query: 404  ctcgcccaggtacatgaaggtatccatgtc 433
            ||| ||||| |||||| || ||||| ||||
Sbjct: 1023 ctctcccagatacatgtagatatccctgtc 994
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>dbj|AK060700.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-030-F10, full
           insert sequence
          Length = 1352

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 74/90 (82%)
 Strand = Plus / Minus

                                                                       
Query: 344 cacctcatcgatctcctcctcgacgcaaaacgtccggcactcgtcgctgcagaacgcctt 403
           |||||| ||||||||||| |||| | |   | ||| |||||||| ||||||||| |||||
Sbjct: 993 cacctcctcgatctcctcatcgatgtagtccctcctgcactcgttgctgcagaatgcctt 934

                                         
Query: 404 ctcgcccaggtacatgaaggtatccatgtc 433
           ||| ||||| |||||| || ||||| ||||
Sbjct: 933 ctctcccagatacatgtagatatccctgtc 904
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>emb|CR559943.6| Zebrafish DNA sequence from clone CH211-200O8 in linkage group 13,
             complete sequence
          Length = 147505

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 13    tataattgattaattaatatatttat 38
             |||||||||||||||||| |||||||
Sbjct: 35352 tataattgattaattaatttatttat 35377
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>emb|BX649289.11| Zebrafish DNA sequence from clone DKEY-231H5 in linkage group 20,
             complete sequence
          Length = 124708

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 21    attaattaatatatttatggca 42
             ||||||||||||||||||||||
Sbjct: 26534 attaattaatatatttatggca 26555
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 17      attgattaattaatatatttat 38
               ||||||||||||||||||||||
Sbjct: 8097740 attgattaattaatatatttat 8097719
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>dbj|AP003738.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1058_C08
          Length = 117923

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 17    attgattaattaatatatttat 38
             ||||||||||||||||||||||
Sbjct: 31512 attgattaattaatatatttat 31491
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>gb|AC167247.2| Mus musculus BAC clone RP23-418C19 from chromosome 17, complete
             sequence
          Length = 185234

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 15    taattgattaattaatatatttatg 39
             ||||| |||||||||||||||||||
Sbjct: 10756 taattaattaattaatatatttatg 10780
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>gb|AY596534.1| Saccharum officinarum clone SCJLLR1104A08, complete sequence
          Length = 1065

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 377 ccggcactcgtcgctgcagaacgcc 401
           ||||||||| |||||||||||||||
Sbjct: 414 ccggcactcctcgctgcagaacgcc 390
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>gb|AC108870.2| Oryza sativa (japonica cultivar-group) chromosome 11 PAC clone
             P0682E05, complete sequence
          Length = 162223

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 377   ccggcactcgtcgctgcagaacgcc 401
             |||||| ||||||||||||||||||
Sbjct: 75435 ccggcagtcgtcgctgcagaacgcc 75411
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>gb|AC128661.3| Mus musculus BAC clone RP24-567N23 from chromosome 7, complete sequence
          Length = 151249

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 228   tccaaaccaaaacaagaagaa 248
             |||||||||||||||||||||
Sbjct: 94770 tccaaaccaaaacaagaagaa 94750
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 377      ccggcactcgtcgctgcagaacgcc 401
                |||||| ||||||||||||||||||
Sbjct: 25585388 ccggcagtcgtcgctgcagaacgcc 25585364
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>gb|AY107714.1| Zea mays PCO121192 mRNA sequence
          Length = 742

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 377 ccggcactcgtcgctgcagaacgcc 401
           ||||||||| |||||||||||||||
Sbjct: 357 ccggcactcctcgctgcagaacgcc 333
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 377      ccggcactcgtcgctgcagaacgcc 401
                |||||| ||||||||||||||||||
Sbjct: 25904058 ccggcagtcgtcgctgcagaacgcc 25904034
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>gb|AC147138.3| Mus musculus BAC clone RP24-230H23 from 7, complete sequence
          Length = 189381

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 228    tccaaaccaaaacaagaagaa 248
              |||||||||||||||||||||
Sbjct: 188485 tccaaaccaaaacaagaagaa 188465
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>gb|AC146616.3| Mus musculus BAC clone RP23-9A18 from 7, complete sequence
          Length = 198813

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 228    tccaaaccaaaacaagaagaa 248
              |||||||||||||||||||||
Sbjct: 135103 tccaaaccaaaacaagaagaa 135123
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>emb|AL929424.7| Mouse DNA sequence from clone RP23-24F19 on chromosome 2, complete
              sequence
          Length = 204020

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 18     ttgattaattaatatatttat 38
              |||||||||||||||||||||
Sbjct: 165803 ttgattaattaatatatttat 165783
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>ref|XM_482330.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1113

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                               
Query: 389 gctgcagaacgccttctcgcccaggtacatgaaggt 424
           ||||||||||||| | ||||||  ||||||||||||
Sbjct: 664 gctgcagaacgccgtgtcgcccttgtacatgaaggt 629
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>gb|AC104414.8| Mus musculus chromosome 3, clone RP23-99I7, complete sequence
          Length = 212613

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 27     taatatatttatggcacatc 46
              ||||||||||||||||||||
Sbjct: 155373 taatatatttatggcacatc 155392
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>gb|AE014828.1| Plasmodium falciparum 3D7 chromosome 14 section 13 of 13 of the complete
              sequence
          Length = 273275

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 15     taattgattaattaatatatttat 38
              ||||| ||||||||||||||||||
Sbjct: 142008 taattaattaattaatatatttat 142031
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>gb|AC119899.8| Mus musculus chromosome 5, clone RP24-235E5, complete sequence
          Length = 210751

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 15     taattgattaattaatatatttat 38
              ||||| ||||||||||||||||||
Sbjct: 205602 taattaattaattaatatatttat 205579
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>gb|DQ474300.1| Uncultured ectomycorrhiza (Cenococcum geophilum) clone SWUBC100 18S
           ribosomal RNA gene, partial sequence; internal
           transcribed spacer 1, complete sequence; and 5.8S
           ribosomal RNA gene, partial sequence
          Length = 829

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 418 tgaaggtatccatgtcgtct 437
           ||||||||||||||||||||
Sbjct: 263 tgaaggtatccatgtcgtct 244
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>gb|AC129330.4| Mus musculus BAC clone RP23-61B8 from chromosome 8, complete sequence
          Length = 218698

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 15     taattgattaattaatatatttat 38
              ||||| ||||||||||||||||||
Sbjct: 173698 taattaattaattaatatatttat 173675
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>gb|AC134397.6| Mus musculus chromosome 13, clone RP23-265J12, complete sequence
          Length = 192662

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 15   taattgattaattaatatatttat 38
            |||||||||||||||| |||||||
Sbjct: 8966 taattgattaattaatctatttat 8943
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>gb|AF014939.1| Caenorhabditis elegans cosmid ZC132, complete sequence
          Length = 24950

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 18    ttgattaattaatatattta 37
             ||||||||||||||||||||
Sbjct: 22669 ttgattaattaatatattta 22650
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>gb|AC073320.8| Homo sapiens BAC clone RP11-306G20 from 7, complete sequence
          Length = 185273

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 15     taattgattaattaatatatttat 38
              ||||| ||||||||||||||||||
Sbjct: 151820 taattaattaattaatatatttat 151797
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>gb|AC113307.12| Mus musculus chromosome 3, clone RP23-437A2, complete sequence
          Length = 202835

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 18     ttgattaattaatatattta 37
              ||||||||||||||||||||
Sbjct: 130873 ttgattaattaatatattta 130854
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>gb|AC124502.4| Mus musculus BAC clone RP23-414G6 from chromosome 19, complete sequence
          Length = 219212

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 231   aaaccaaaacaagaagaaac 250
             ||||||||||||||||||||
Sbjct: 44930 aaaccaaaacaagaagaaac 44949
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>emb|CR678388.17| Zebrafish DNA sequence from clone CH211-125I3 in linkage group 12,
             complete sequence
          Length = 79224

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 15    taattgattaattaatatatttat 38
             ||||| ||||||||||||||||||
Sbjct: 37870 taatttattaattaatatatttat 37847
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>gb|AC151424.15| Medicago truncatula clone mth2-101c17, complete sequence
          Length = 137117

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 17    attgattaattaatatattt 36
             ||||||||||||||||||||
Sbjct: 41730 attgattaattaatatattt 41749
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>emb|AL450107.11| Human DNA sequence from clone RP11-495K23 on chromosome 13 Contains the
             3' end of a novel gene, complete sequence
          Length = 50886

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 17    attgattaattaatatattt 36
             ||||||||||||||||||||
Sbjct: 37986 attgattaattaatatattt 37967
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>emb|AL139347.10| Human DNA sequence from clone RP5-871P9 on chromosome 1p21.2-22.1
             Contains a NADH dehydrogenase (ubiquinone) Fe-S protein 5
             (15kDa (NADH-coenzyme Q reductase) (NDUFS5)) pseudogene,
             complete sequence
          Length = 74010

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 17    attgattaattaatatattt 36
             ||||||||||||||||||||
Sbjct: 10737 attgattaattaatatattt 10718
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>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 391     tgcagaacgccttctcgccc 410
               ||||||||||||||||||||
Sbjct: 1118562 tgcagaacgccttctcgccc 1118581
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>gb|AC119206.13| Mus musculus chromosome 5, clone RP24-189M4, complete sequence
          Length = 168721

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 15    taattgattaattaatatatttat 38
             ||||| ||||||||||||||||||
Sbjct: 59558 taattaattaattaatatatttat 59535
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>emb|AL929358.1|PFA929358 Plasmodium falciparum strain 3D7, chromosome 9; segment 4/5
          Length = 254050

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 15     taattgattaattaatatatttat 38
              ||||| ||||||||||||||||||
Sbjct: 237473 taattaattaattaatatatttat 237496
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>emb|CR407702.15| Zebrafish DNA sequence from clone DKEY-171M10 in linkage group 17,
              complete sequence
          Length = 155486

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 19     tgattaattaatatatttat 38
              ||||||||||||||||||||
Sbjct: 106447 tgattaattaatatatttat 106428
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>emb|AL845302.4| Zebrafish DNA sequence from clone CH211-108C6 in linkage group 5
             Contains part of a novel gene similar to human SSH1
             (slingshot 1), a novel gene, part of a novel gene similar
             to human CORO1C (actin binding protein coronin 1C) and a
             CpG island, complete sequence
          Length = 147219

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 8     taanatataattgattaattaat 30
             ||| |||||||||||||||||||
Sbjct: 12418 taaaatataattgattaattaat 12440



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 8     taanatataattgattaattaat 30
             ||| |||||||||||||||||||
Sbjct: 11967 taaaatataattgattaattaat 11989
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>gb|AC093497.2| Drosophila melanogaster 3L BAC RP98-1H12 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 170071

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 83     aagggaatacccaatgccca 102
              ||||||||||||||||||||
Sbjct: 132687 aagggaatacccaatgccca 132706
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>gb|AC091209.3| Drosophila melanogaster 3L BAC RP98-3G6 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 194979

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 83    aagggaatacccaatgccca 102
             ||||||||||||||||||||
Sbjct: 45220 aagggaatacccaatgccca 45239
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>gb|AC157645.8| Medicago truncatula clone mth2-70l21, complete sequence
          Length = 118562

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 17     attgattaattaatatattt 36
              ||||||||||||||||||||
Sbjct: 115378 attgattaattaatatattt 115397
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>gb|AC087274.8| Homo sapiens chromosome 8, clone RP11-681J6, complete sequence
          Length = 191786

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 15    taattgattaattaatatatttat 38
             ||||| ||||||||||||||||||
Sbjct: 19143 taattaattaattaatatatttat 19166
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>gb|AC084865.3| Homo sapiens chromosome 7 clone RP11-437L1, complete sequence
          Length = 214162

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 15     taattgattaattaatatatttat 38
              ||||| ||||||||||||||||||
Sbjct: 173410 taattaattaattaatatatttat 173433
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>gb|AC013724.8| Homo sapiens BAC clone RP11-319E12 from 4, complete sequence
          Length = 166521

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 15     taattgattaattaatatatttat 38
              ||||| ||||||||||||||||||
Sbjct: 141457 taattaattaattaatatatttat 141480
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>gb|CP000123.1| Mycoplasma capricolum subsp. capricolum ATCC 27343, complete genome
          Length = 1010023

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 14     ataattgattaattaatata 33
              ||||||||||||||||||||
Sbjct: 616564 ataattgattaattaatata 616545
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>gb|AC153363.4| Mus musculus BAC clone RP23-5I6 from chromosome 9, complete sequence
          Length = 185444

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 15    taattgattaattaatatatttat 38
             |||||||||||||||| |||||||
Sbjct: 14048 taattgattaattaatttatttat 14071
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>gb|AC018499.3| Homo sapiens chromosome 3 clone RP11-267L16 map 3p, complete sequence
          Length = 198444

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 218  cctaccaagttccaaaccaa 237
            ||||||||||||||||||||
Sbjct: 1341 cctaccaagttccaaaccaa 1322
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>gb|AC018818.5|AC018818 Homo sapiens chromosome 3 clone RP11-266E23 map 3p, complete sequence
          Length = 156335

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 218    cctaccaagttccaaaccaa 237
              ||||||||||||||||||||
Sbjct: 148246 cctaccaagttccaaaccaa 148227
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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 344     cacctcatcgatctcctcctcgac 367
               ||||||||||||||||| ||||||
Sbjct: 4127229 cacctcatcgatctcctgctcgac 4127206
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>emb|BX649639.4| Zebrafish DNA sequence from clone CH211-102G22 in linkage group 22,
             complete sequence
          Length = 169981

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 15    taattgattaattaatatatttat 38
             ||||| ||||||||||||||||||
Sbjct: 21918 taattaattaattaatatatttat 21941
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>emb|AJ580822.1|LCO580822 Lotus corniculatus var. japonicus gene for coatomer alpha
            subunit-like protein
          Length = 11115

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 17   attgattaattaatatattt 36
            ||||||||||||||||||||
Sbjct: 7365 attgattaattaatatattt 7384
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>gb|AF213505.1|AF213505 Brassica napus putative cell-wall P8 protein (P8) gene, complete
           cds
          Length = 4180

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 15  taattgattaattaatatatttat 38
           ||||| ||||||||||||||||||
Sbjct: 569 taattaattaattaatatatttat 592
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>dbj|AK099936.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013119L03, full
           insert sequence
          Length = 1113

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                               
Query: 389 gctgcagaacgccttctcgcccaggtacatgaaggt 424
           ||||||||||||| | ||||||  ||||||||||||
Sbjct: 664 gctgcagaacgccgtgtcgcccttgtacatgaaggt 629
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>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence
          Length = 3131724

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 346     cctcatcgatctcctcctcg 365
               ||||||||||||||||||||
Sbjct: 2951280 cctcatcgatctcctcctcg 2951299
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>emb|CT025569.14| Mouse DNA sequence from clone RP24-68J22 on chromosome 13, complete
              sequence
          Length = 230723

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 15     taattgattaattaatatatttat 38
              ||||| ||||||||||||||||||
Sbjct: 204391 taattaattaattaatatatttat 204414
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>emb|BX942844.18| Zebrafish DNA sequence from clone CH211-11M18 in linkage group 20,
             complete sequence
          Length = 101954

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 14    ataattgattaattaatata 33
             ||||||||||||||||||||
Sbjct: 37254 ataattgattaattaatata 37273
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>gb|AE003532.3| Drosophila melanogaster chromosome 3L, section 53 of 83 of the complete
              sequence
          Length = 295875

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 83     aagggaatacccaatgccca 102
              ||||||||||||||||||||
Sbjct: 105773 aagggaatacccaatgccca 105792
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>gb|AC127691.4| Mus musculus BAC clone RP24-216M10 from 9, complete sequence
          Length = 153242

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 17    attgattaattaatatattt 36
             ||||||||||||||||||||
Sbjct: 44196 attgattaattaatatattt 44215
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>gb|AC122542.3| Mus musculus BAC clone RP24-572J16 from 9, complete sequence
          Length = 175952

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 15    taattgattaattaatatatttat 38
             |||||||||||||||| |||||||
Sbjct: 64667 taattgattaattaatttatttat 64644
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>dbj|AP005665.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT09E01, TM0258a,
            complete sequence
          Length = 6464

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 17   attgattaattaatatattt 36
            ||||||||||||||||||||
Sbjct: 2576 attgattaattaatatattt 2595
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>gb|M84006.1|HALHSP70 Halobacterium marismortui heat shock protein 70 (HSP70) gene,
            complete cds
          Length = 2315

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 346  cctcatcgatctcctcctcg 365
            ||||||||||||||||||||
Sbjct: 1597 cctcatcgatctcctcctcg 1578
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>gb|AC018502.6| Homo sapiens chromosome 3 clone RP11-327H17 map 3p, complete sequence
          Length = 198459

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 218  cctaccaagttccaaaccaa 237
            ||||||||||||||||||||
Sbjct: 1345 cctaccaagttccaaaccaa 1326
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>gb|AC018495.5| Homo sapiens chromosome 3 clone RP11-193K15 map 3p, complete sequence
          Length = 173592

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 218   cctaccaagttccaaaccaa 237
             ||||||||||||||||||||
Sbjct: 21867 cctaccaagttccaaaccaa 21886


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,801,374
Number of Sequences: 3902068
Number of extensions: 3801374
Number of successful extensions: 91023
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 90743
Number of HSP's gapped (non-prelim): 284
length of query: 447
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 425
effective length of database: 17,147,199,772
effective search space: 7287559903100
effective search space used: 7287559903100
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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