>gb|AC024158.5| Homo sapiens chromosome 3 clone RP11-245A6 map 3p, complete sequence
          Length = 162042

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 123   tctaaataacctaccttaatcc 144
             ||||||||||||||||||||||
Sbjct: 76648 tctaaataacctaccttaatcc 76627

>gb|AC018492.6|AC018492 Homo sapiens chromosome 3 clone RP11-135E16 map 3p, complete sequence
          Length = 169084

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 123    tctaaataacctaccttaatcc 144
              ||||||||||||||||||||||
Sbjct: 159894 tctaaataacctaccttaatcc 159873

>gb|AC129477.11| Mus musculus chromosome 13, clone RP23-98D15, complete sequence
          Length = 251066

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                               
Query: 18     aagtatttaataccaaggttttattttttcaga 50
              |||||||||||| | ||||||| ||||||||||
Sbjct: 123468 aagtatttaataaccaggtttttttttttcaga 123500

>gb|AC007542.3| Homo sapiens 12p12 BAC RPCI11-320J20 (Roswell Park Cancer Institute
             Human BAC Library) complete sequence
          Length = 162081

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 40    attttttcagaaaccatggta 60
             |||||||||||||||||||||
Sbjct: 13987 attttttcagaaaccatggta 13967

>gb|AC092183.6| Homo sapiens 12p BAC RP11-6K23 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 160015

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 40    attttttcagaaaccatggta 60
             |||||||||||||||||||||
Sbjct: 29285 attttttcagaaaccatggta 29305

>emb|CT009759.12| Mouse DNA sequence from clone RP23-213P21 on chromosome 13, complete
             sequence
          Length = 199967

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                              
Query: 18    aagtatttaataccaaggttttattttttcaga 50
             |||||||||||| | ||||||| ||||||||||
Sbjct: 51512 aagtatttaataaccaggtttttttttttcaga 51544

>gb|AC134415.8| Mus musculus chromosome 3, clone RP24-224P21, complete sequence
          Length = 167586

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 6     cccaacaccacaaagtattt 25
             ||||||||||||||||||||
Sbjct: 78145 cccaacaccacaaagtattt 78126

>gb|AC160930.2| Mus musculus BAC clone RP24-383F22 from chromosome 14, complete sequence
          Length = 230236

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 23     tttaataccaaggttttatt 42
              ||||||||||||||||||||
Sbjct: 105822 tttaataccaaggttttatt 105803

>ref|XM_418535.1| PREDICTED: Gallus gallus similar to voltage-gated sodium channel
            (LOC420429), mRNA
          Length = 8050

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 26   aataccaaggttttattttt 45
            ||||||||||||||||||||
Sbjct: 6242 aataccaaggttttattttt 6261

>gb|AC120869.12| Mus musculus chromosome 9, clone RP23-128A11, complete sequence
          Length = 244776

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 310    aaagaaagtcaacgcagaca 329
              ||||||||||||||||||||
Sbjct: 212066 aaagaaagtcaacgcagaca 212047

>gb|AF233439.7| Homo sapiens chromosome 8 clones GS1-24F4, CTD-2629I16 map p23.1,
              complete sequences
          Length = 231283

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 227    ccatattggatggtgctgct 246
              ||||||||||||||||||||
Sbjct: 112519 ccatattggatggtgctgct 112500

>gb|AF205406.5| Homo sapiens chromosome 8 clone SCb-633e22 map p23.1, complete sequence
          Length = 168907

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 227   ccatattggatggtgctgct 246
             ||||||||||||||||||||
Sbjct: 65197 ccatattggatggtgctgct 65178

>gb|AF298854.5| Homo sapiens chromosome 8 clone SCb-207i3 map p23.1, complete sequence
          Length = 110283

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 227   ccatattggatggtgctgct 246
             ||||||||||||||||||||
Sbjct: 75204 ccatattggatggtgctgct 75185

>gb|AC122386.3| Mus musculus BAC clone RP24-72H18 from chromosome 7, complete
           sequence
          Length = 161949

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 33  aggttttattttttcagaaa 52
           ||||||||||||||||||||
Sbjct: 932 aggttttattttttcagaaa 913

>gb|AC123844.4| Mus musculus BAC clone RP23-416P14 from chromosome 7, complete sequence
          Length = 198721

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 33     aggttttattttttcagaaa 52
              ||||||||||||||||||||
Sbjct: 183296 aggttttattttttcagaaa 183277

>gb|AC135801.24| Medicago truncatula clone mth2-23o16, complete sequence
          Length = 115452

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 97   acatctttgacaactttttt 116
            ||||||||||||||||||||
Sbjct: 9768 acatctttgacaactttttt 9787

>gb|AC105515.5| Rattus norvegicus 14 BAC CH230-13H11 (Children's Hospital Oakland
              Research Institute) complete sequence
          Length = 221805

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 329    acaccatccttctccctgta 348
              ||||||||||||||||||||
Sbjct: 141732 acaccatccttctccctgta 141751

>emb|AL157813.11| Human DNA sequence from clone RP11-165D7 on chromosome 13 Contains the
             CHC1L gene for chromosome condensation 1-like, 3 novel
             genes and a CpG island, complete sequence
          Length = 114519

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 326   gacacaccatccttctccct 345
             ||||||||||||||||||||
Sbjct: 63839 gacacaccatccttctccct 63820

>emb|BX571947.8| Zebrafish DNA sequence from clone DKEY-162F21 in linkage group 10,
            complete sequence
          Length = 269153

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 10   acaccacaaagtatttaata 29
            ||||||||||||||||||||
Sbjct: 6236 acaccacaaagtatttaata 6255

>gb|AC079018.10| Homo sapiens chromosome 8, clone RP11-161B1, complete sequence
          Length = 168702

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 227   ccatattggatggtgctgct 246
             ||||||||||||||||||||
Sbjct: 46521 ccatattggatggtgctgct 46502

>emb|BX324190.13| Zebrafish DNA sequence from clone CH211-220I18 in linkage group 23,
              complete sequence
          Length = 217060

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 86     tgcatcccaacacatctttg 105
              ||||||||||||||||||||
Sbjct: 155562 tgcatcccaacacatctttg 155581

>gb|AC016884.10| Homo sapiens chromosome , clone RP11-350M7, complete sequence
          Length = 209320

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 361    cctttgctttcctcatctag 380
              ||||||||||||||||||||
Sbjct: 195952 cctttgctttcctcatctag 195971

>dbj|AK085607.1| Mus musculus 0 day neonate kidney cDNA, RIKEN full-length enriched
           library, clone:D630046B05 product:unclassifiable, full
           insert sequence
          Length = 1137

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 310 aaagaaagtcaacgcagaca 329
           ||||||||||||||||||||
Sbjct: 276 aaagaaagtcaacgcagaca 257

>gb|AY168947.1| Echinoparyphium aconiatum isolate FA4 NADH dehydrogenase subunit
          1 (ND1) gene, partial cds; mitochondrial gene for
          mitochondrial product
          Length = 497

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 32 aaggttttattttttcagaa 51
          ||||||||||||||||||||
Sbjct: 78 aaggttttattttttcagaa 97

>gb|AY168946.1| Echinoparyphium aconiatum isolate FA3 NADH dehydrogenase subunit
          1 (ND1) gene, partial cds; mitochondrial gene for
          mitochondrial product
          Length = 497

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 32 aaggttttattttttcagaa 51
          ||||||||||||||||||||
Sbjct: 78 aaggttttattttttcagaa 97

>gb|AY168945.1| Echinoparyphium aconiatum isolate FA1 NADH dehydrogenase subunit 1
           (ND1) gene, partial cds; mitochondrial gene for
           mitochondrial product
          Length = 517

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 32  aaggttttattttttcagaa 51
           ||||||||||||||||||||
Sbjct: 87  aaggttttattttttcagaa 106

>gb|AF269552.1|AF269552 Staphylococcus epidermidis strain SR1 clone step.1010c07 genomic
            sequence
          Length = 3077

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 32   aaggttttattttttcagaa 51
            ||||||||||||||||||||
Sbjct: 2254 aaggttttattttttcagaa 2235

>gb|AF269543.1|AF269543 Staphylococcus epidermidis strain SR1 clone step.1008h11 genomic
            sequence
          Length = 3058

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 32   aaggttttattttttcagaa 51
            ||||||||||||||||||||
Sbjct: 1539 aaggttttattttttcagaa 1558

>gb|U50931.1|HSBDONE2 Homo sapiens beta-defensin-1 gene, exon 2 and complete cds
          Length = 2030

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 227 ccatattggatggtgctgct 246
           ||||||||||||||||||||
Sbjct: 142 ccatattggatggtgctgct 161

>gb|AC121951.3| Mus musculus BAC clone RP24-217M7 from 9, complete sequence
          Length = 163528

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 310  aaagaaagtcaacgcagaca 329
            ||||||||||||||||||||
Sbjct: 1655 aaagaaagtcaacgcagaca 1636

>gb|AC147646.2| Gallus gallus BAC clone CH261-13L1 from chromosome unknown, complete
              sequence
          Length = 238934

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 33     aggttttattttttcagaaa 52
              ||||||||||||||||||||
Sbjct: 153452 aggttttattttttcagaaa 153471

>emb|AL157690.7|CNS01RG2 Human chromosome 14 DNA sequence BAC R-565E24 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 163398

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 33     aggttttattttttcagaaa 52
              ||||||||||||||||||||
Sbjct: 153934 aggttttattttttcagaaa 153915


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,966,872
Number of Sequences: 3902068
Number of extensions: 4966872
Number of successful extensions: 89428
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 89361
Number of HSP's gapped (non-prelim): 67
length of query: 382
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 360
effective length of database: 17,147,199,772
effective search space: 6172991917920
effective search space used: 6172991917920
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)