ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart06f09 |
|---|---|
| Clone Library Name | barley_pub |
>DPO1_THECA (P80194) DNA polymerase I, thermostable (EC 2.7.7.7) (TAC| polymerase 1) Length = 834 Score = 30.0 bits (66), Expect = 2.5 Identities = 12/21 (57%), Positives = 14/21 (66%) Frame = +1 Query: 244 PSGTPPLRKAKEFGGEWIEDA 306 PS T P A+ +GGEW EDA Sbjct: 384 PSNTTPEGVARRYGGEWTEDA 404
>DPO1T_THET8 (P52028) DNA polymerase I, thermostable (EC 2.7.7.7) (Tth| polymerase 1) Length = 834 Score = 30.0 bits (66), Expect = 2.5 Identities = 12/21 (57%), Positives = 14/21 (66%) Frame = +1 Query: 244 PSGTPPLRKAKEFGGEWIEDA 306 PS T P A+ +GGEW EDA Sbjct: 384 PSNTTPEGVARRYGGEWTEDA 404
>NTP1_VACCV (P05807) Nucleoside triphosphatase I (EC 3.6.1.15) (Nucleoside| triphosphate phosphohydrolase I) (NPH I) (Factor X) Length = 631 Score = 30.0 bits (66), Expect = 2.5 Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 1/52 (1%) Frame = +1 Query: 25 IQSHQLEYIINFTI-KHSNLNYTEXENQSFKPRETESATRTALNELIRVQSS 177 IQS E++ F + KH++L + + F P + ES +T ++ I + S+ Sbjct: 517 IQSKSKEFVQLFRVFKHTSLEWIHANEKDFSPIDNESGWKTLVSRAIDLSSN 568
>DPO1F_THETH (P30313) DNA polymerase I, thermostable (EC 2.7.7.7) (Tfl| polymerase 1) Length = 831 Score = 30.0 bits (66), Expect = 2.5 Identities = 12/21 (57%), Positives = 14/21 (66%) Frame = +1 Query: 244 PSGTPPLRKAKEFGGEWIEDA 306 PS T P A+ +GGEW EDA Sbjct: 381 PSNTTPEGVARRYGGEWTEDA 401
>NTP1_VARV (P33066) Nucleoside triphosphatase I (EC 3.6.1.15) (Nucleoside| triphosphate phosphohydrolase I) (NPH I) Length = 631 Score = 29.6 bits (65), Expect = 3.2 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%) Frame = +1 Query: 25 IQSHQLEYIINFTI-KHSNLNYTEXENQSFKPRETESATRTALNELIRVQS 174 IQS E++ F + KH++L + + F P + ES +T ++ I + S Sbjct: 517 IQSKSKEFVQLFRVFKHTSLEWIHANEKDFSPIDNESGWKTLVSRAIDLSS 567
>NTP1_VACCC (P20637) Nucleoside triphosphatase I (EC 3.6.1.15) (Nucleoside| triphosphate phosphohydrolase I) (NPH I) (Factor X) Length = 631 Score = 29.6 bits (65), Expect = 3.2 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%) Frame = +1 Query: 25 IQSHQLEYIINFTI-KHSNLNYTEXENQSFKPRETESATRTALNELIRVQS 174 IQS E++ F + KH++L + + F P + ES +T ++ I + S Sbjct: 517 IQSKSKEFVQLFRVFKHTSLEWIHANEKDFSPIDNESGWKTLVSRAIDLSS 567
>NTP1_VACCA (O57214) Nucleoside triphosphatase I (EC 3.6.1.15) (Nucleoside| triphosphate phosphohydrolase I) (NPH I) (Factor X) Length = 631 Score = 29.6 bits (65), Expect = 3.2 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%) Frame = +1 Query: 25 IQSHQLEYIINFTI-KHSNLNYTEXENQSFKPRETESATRTALNELIRVQS 174 IQS E++ F + KH++L + + F P + ES +T ++ I + S Sbjct: 517 IQSKSKEFVQLFRVFKHTSLEWIHANEKDFSPIDNESGWKTLVSRAIDLSS 567
>DPO1_THEAQ (P19821) DNA polymerase I, thermostable (EC 2.7.7.7) (Taq| polymerase 1) Length = 832 Score = 28.5 bits (62), Expect = 7.2 Identities = 11/21 (52%), Positives = 14/21 (66%) Frame = +1 Query: 244 PSGTPPLRKAKEFGGEWIEDA 306 PS T P A+ +GGEW E+A Sbjct: 382 PSNTTPEGVARRYGGEWTEEA 402
>VE2_HPV05 (P06921) Regulatory protein E2| Length = 514 Score = 28.1 bits (61), Expect = 9.4 Identities = 15/44 (34%), Positives = 23/44 (52%) Frame = +3 Query: 300 RCAAHRTRAPRRGAAICKRG*SRAPRLMAATQHTGSPSIASLCS 431 R R+R+ R C+RG R+PR + + SPS +S C+ Sbjct: 304 RALTSRSRSRGRSPTTCRRGGGRSPR-----RRSRSPSTSSSCT 342
>HAM1_LEGPL (Q5WTW9) HAM1 protein homolog| Length = 194 Score = 28.1 bits (61), Expect = 9.4 Identities = 17/47 (36%), Positives = 23/47 (48%) Frame = +1 Query: 238 CIPSGTPPLRKAKEFGGEWIEDALLIGLERRGEARPYASADDPGRLV 378 CIP + A+E G +IE+A+L A A ADD G +V Sbjct: 26 CIPQADLGISDAEETGLSFIENAILKARHASSLANKPALADDSGLVV 72
>HAM1_LEGPH (Q5ZSN3) HAM1 protein homolog| Length = 194 Score = 28.1 bits (61), Expect = 9.4 Identities = 17/47 (36%), Positives = 23/47 (48%) Frame = +1 Query: 238 CIPSGTPPLRKAKEFGGEWIEDALLIGLERRGEARPYASADDPGRLV 378 CIP + A+E G +IE+A+L A A ADD G +V Sbjct: 26 CIPQADLGISDAEETGLSFIENAILKARHASSLANKPALADDSGLVV 72 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 57,862,733 Number of Sequences: 219361 Number of extensions: 1050681 Number of successful extensions: 2326 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 2295 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2326 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2453576370 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
