ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart06f08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RW1_MOUSE (O70472) RW1 protein 32 1.1
2RW1_HUMAN (Q92545) RW1 protein (Fragment) 29 5.3
3DPO3X_SALTY (P74876) DNA polymerase III tau subunit (EC 2.7.7.7)... 28 9.1

>RW1_MOUSE (O70472) RW1 protein|
          Length = 1829

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = +3

Query: 57  LLIPLAAGYFF-LFFTYICIIMHIDRHLRIDSNASKIRPNLRPFS 188
           L++P  +GY F LFF      MHID ++ + +NASK    +R ++
Sbjct: 441 LILPNESGYIFTLFFMPSTSSMHIDNNILLVTNASKFHLPVRVYT 485



to top

>RW1_HUMAN (Q92545) RW1 protein (Fragment)|
          Length = 1805

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +3

Query: 57  LLIPLAAGYFF-LFFTYICIIMHIDRHLRIDSNASKIRPNLRPFS 188
           L++P  +GY F L F      MHID ++ + +NASK    +R ++
Sbjct: 413 LILPNESGYIFTLLFMPSTSSMHIDNNILLITNASKFHLPVRVYT 457



to top

>DPO3X_SALTY (P74876) DNA polymerase III tau subunit (EC 2.7.7.7) [Contains: DNA|
           polymerase III gamma subunit]
          Length = 642

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 19/44 (43%), Positives = 26/44 (59%)
 Frame = +2

Query: 323 AAHHCHRRPWSASVAGQSLPVEGLLEALQVLGLQREQHGHAVVL 454
           AA    R PW+A V+  SLP   L+E +  L   +EQ+G+AV L
Sbjct: 513 AAEAIERDPWAAQVSQLSLP--KLVEQV-ALNAWKEQNGNAVCL 553


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,505,371
Number of Sequences: 219361
Number of extensions: 1105496
Number of successful extensions: 3116
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3116
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3072927439
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top