Clone Name | rbart06f07 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_738647.1| Plasmodium chabaudi chabaudi hypothetical protein (PC000222.05.0) partial mRNA Length = 348 Score = 42.1 bits (21), Expect = 0.16 Identities = 21/21 (100%) Strand = Plus / Plus Query: 20 ttttacacaaaatccaaaaaa 40 ||||||||||||||||||||| Sbjct: 98 ttttacacaaaatccaaaaaa 118
>ref|XM_734661.1| Plasmodium chabaudi chabaudi hypothetical protein (PC302074.00.0) partial mRNA Length = 429 Score = 42.1 bits (21), Expect = 0.16 Identities = 21/21 (100%) Strand = Plus / Plus Query: 20 ttttacacaaaatccaaaaaa 40 ||||||||||||||||||||| Sbjct: 98 ttttacacaaaatccaaaaaa 118
>gb|AC093731.2| Homo sapiens BAC clone RP11-12L16 from 2, complete sequence Length = 190686 Score = 42.1 bits (21), Expect = 0.16 Identities = 21/21 (100%) Strand = Plus / Minus Query: 23 tacacaaaatccaaaaaatta 43 ||||||||||||||||||||| Sbjct: 96261 tacacaaaatccaaaaaatta 96241
>emb|AL953892.7| Zebrafish DNA sequence from clone CH211-209C6 in linkage group 21, complete sequence Length = 202472 Score = 42.1 bits (21), Expect = 0.16 Identities = 21/21 (100%) Strand = Plus / Plus Query: 23 tacacaaaatccaaaaaatta 43 ||||||||||||||||||||| Sbjct: 37652 tacacaaaatccaaaaaatta 37672
>ref|XM_712170.1| Candida albicans SC5314 acetyl coenzyme A transporter (CaO19_11263), mRNA Length = 1662 Score = 40.1 bits (20), Expect = 0.65 Identities = 20/20 (100%) Strand = Plus / Plus Query: 28 aaaatccaaaaaattattta 47 |||||||||||||||||||| Sbjct: 491 aaaatccaaaaaattattta 510
>ref|XM_712094.1| Candida albicans SC5314 acetyl coenzyme A transporter (CaO19_3782), mRNA Length = 1662 Score = 40.1 bits (20), Expect = 0.65 Identities = 20/20 (100%) Strand = Plus / Plus Query: 28 aaaatccaaaaaattattta 47 |||||||||||||||||||| Sbjct: 491 aaaatccaaaaaattattta 510
>gb|AY371697.2| Homo sapiens integrin, alpha 8 (ITGA8) gene, complete cds Length = 206310 Score = 40.1 bits (20), Expect = 0.65 Identities = 20/20 (100%) Strand = Plus / Minus Query: 33 ccaaaaaattatttagcatc 52 |||||||||||||||||||| Sbjct: 151720 ccaaaaaattatttagcatc 151701
>emb|AL590636.12| Human DNA sequence from clone RP11-50E19 on chromosome 10 Contains the 3' end of the ITGA8 gene for integrin alpha 8, complete sequence Length = 141790 Score = 40.1 bits (20), Expect = 0.65 Identities = 20/20 (100%) Strand = Plus / Plus Query: 33 ccaaaaaattatttagcatc 52 |||||||||||||||||||| Sbjct: 112942 ccaaaaaattatttagcatc 112961
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 0.65 Identities = 20/20 (100%) Strand = Plus / Minus Query: 29 aaatccaaaaaattatttag 48 |||||||||||||||||||| Sbjct: 12001949 aaatccaaaaaattatttag 12001930
>gb|AC008310.5|AC008310 Drosophila melanogaster, chromosome 3R, region 100C-100D, BAC clone BACR16C04, complete sequence Length = 159528 Score = 40.1 bits (20), Expect = 0.65 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 aatccaaaaaattatttagc 49 |||||||||||||||||||| Sbjct: 57034 aatccaaaaaattatttagc 57053
>gb|AC007469.7|AC007469 Drosophila melanogaster, chromosome 3R, region 100D1-100F2, BAC clone BACR48C22, complete sequence Length = 181446 Score = 40.1 bits (20), Expect = 0.65 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 aatccaaaaaattatttagc 49 |||||||||||||||||||| Sbjct: 6669 aatccaaaaaattatttagc 6688
>emb|BX119902.4| Zebrafish DNA sequence from clone CH211-137I24 in linkage group 5, complete sequence Length = 170241 Score = 40.1 bits (20), Expect = 0.65 Identities = 20/20 (100%) Strand = Plus / Plus Query: 25 cacaaaatccaaaaaattat 44 |||||||||||||||||||| Sbjct: 101337 cacaaaatccaaaaaattat 101356
>gb|AF483826.1| Plasmodium falciparum variant surface antigen rifin (rif58) gene, partial cds Length = 1296 Score = 40.1 bits (20), Expect = 0.65 Identities = 20/20 (100%) Strand = Plus / Plus Query: 29 aaatccaaaaaattatttag 48 |||||||||||||||||||| Sbjct: 508 aaatccaaaaaattatttag 527
>emb|CR936482.7| Zebrafish DNA sequence from clone DKEY-166F24 in linkage group 17, complete sequence Length = 39394 Score = 40.1 bits (20), Expect = 0.65 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 tcttttacacaaaatccaaa 37 |||||||||||||||||||| Sbjct: 15308 tcttttacacaaaatccaaa 15327
>gb|AE003779.2| Drosophila melanogaster chromosome 3R, section 117 of 118 of the complete sequence Length = 232050 Score = 40.1 bits (20), Expect = 0.65 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 aatccaaaaaattatttagc 49 |||||||||||||||||||| Sbjct: 45941 aatccaaaaaattatttagc 45960
>gb|BC084395.1| Xenopus laevis cDNA clone IMAGE:6957035 Length = 2986 Score = 38.2 bits (19), Expect = 2.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 7 agcagggaccctcttttac 25 ||||||||||||||||||| Sbjct: 196 agcagggaccctcttttac 214
>gb|AF067615.1| Caenorhabditis elegans cosmid T05C7, complete sequence Length = 35033 Score = 38.2 bits (19), Expect = 2.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 28 aaaatccaaaaaattattt 46 ||||||||||||||||||| Sbjct: 17229 aaaatccaaaaaattattt 17211
>gb|AF078788.1| Caenorhabditis elegans cosmid ZC190, complete sequence Length = 39057 Score = 38.2 bits (19), Expect = 2.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 28 aaaatccaaaaaattattt 46 ||||||||||||||||||| Sbjct: 28469 aaaatccaaaaaattattt 28451
>gb|AC024209.1| Caenorhabditis elegans cosmid Y75D11A, complete sequence Length = 33011 Score = 38.2 bits (19), Expect = 2.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 28 aaaatccaaaaaattattt 46 ||||||||||||||||||| Sbjct: 18290 aaaatccaaaaaattattt 18272
>gb|AC182674.2| Populus trichocarpa clone Pop1-27N13, complete sequence Length = 118702 Score = 38.2 bits (19), Expect = 2.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 28 aaaatccaaaaaattattt 46 ||||||||||||||||||| Sbjct: 25839 aaaatccaaaaaattattt 25821
>emb|AJ865302.1| Cocos nucifera microsatellite DNA, clone CnCir 219 Length = 415 Score = 38.2 bits (19), Expect = 2.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 26 acaaaatccaaaaaattat 44 ||||||||||||||||||| Sbjct: 244 acaaaatccaaaaaattat 226
>gb|AF025459.1| Caenorhabditis elegans fosmid H14A12, complete sequence Length = 24054 Score = 38.2 bits (19), Expect = 2.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 28 aaaatccaaaaaattattt 46 ||||||||||||||||||| Sbjct: 15552 aaaatccaaaaaattattt 15570
>gb|U23413.1| Caenorhabditis elegans cosmid B0353, complete sequence Length = 26112 Score = 38.2 bits (19), Expect = 2.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 28 aaaatccaaaaaattattt 46 ||||||||||||||||||| Sbjct: 5251 aaaatccaaaaaattattt 5233
>gb|AC008581.11| Homo sapiens chromosome 5 clone CTC-564N23, complete sequence Length = 198564 Score = 38.2 bits (19), Expect = 2.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 23 tacacaaaatccaaaaaattatt 45 |||||||||| |||||||||||| Sbjct: 139243 tacacaaaatacaaaaaattatt 139265
>emb|AL139258.13| Human DNA sequence from clone RP5-817C23 on chromosome 1p31.3-32.2 Contains a heterogeneous nuclear ribonucleoprotein C (C1/C2) (HNRPC) pseudogene, complete sequence Length = 100369 Score = 38.2 bits (19), Expect = 2.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 17 ctcttttacacaaaatcca 35 ||||||||||||||||||| Sbjct: 54823 ctcttttacacaaaatcca 54805
>emb|BX908733.14| Zebrafish DNA sequence from clone CH211-190N7 in linkage group 22, complete sequence Length = 153031 Score = 38.2 bits (19), Expect = 2.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 28 aaaatccaaaaaattattt 46 ||||||||||||||||||| Sbjct: 128182 aaaatccaaaaaattattt 128200
>gb|AC139345.8| Papio anubis clone rp41-256p17, complete sequence Length = 179810 Score = 38.2 bits (19), Expect = 2.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 28 aaaatccaaaaaattattt 46 ||||||||||||||||||| Sbjct: 151036 aaaatccaaaaaattattt 151018
>gb|AC110616.4| Homo sapiens BAC clone RP11-597I10 from 4, complete sequence Length = 80656 Score = 38.2 bits (19), Expect = 2.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 26 acaaaatccaaaaaattat 44 ||||||||||||||||||| Sbjct: 53921 acaaaatccaaaaaattat 53939
>gb|AC006528.5| Arabidopsis thaliana chromosome 2 clone F9B22 map mi398, complete sequence Length = 95765 Score = 38.2 bits (19), Expect = 2.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 22 ttacacaaaatccaaaaaa 40 ||||||||||||||||||| Sbjct: 61668 ttacacaaaatccaaaaaa 61686
>gb|AC069548.6| Homo sapiens chromosome 10 clone RP11-522H2, complete sequence Length = 131909 Score = 38.2 bits (19), Expect = 2.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 28 aaaatccaaaaaattattt 46 ||||||||||||||||||| Sbjct: 48397 aaaatccaaaaaattattt 48415
>gb|AC096768.3| Homo sapiens BAC clone RP11-722P15 from 4, complete sequence Length = 180430 Score = 38.2 bits (19), Expect = 2.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 21 tttacacaaaatccaaaaaatta 43 |||||||||||| |||||||||| Sbjct: 82832 tttacacaaaatacaaaaaatta 82854
>gb|AF067944.1| Caenorhabditis elegans cosmid K10C9, complete sequence Length = 34348 Score = 38.2 bits (19), Expect = 2.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 28 aaaatccaaaaaattattt 46 ||||||||||||||||||| Sbjct: 15112 aaaatccaaaaaattattt 15094
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 38.2 bits (19), Expect = 2.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 24 acacaaaatccaaaaaatt 42 ||||||||||||||||||| Sbjct: 27784368 acacaaaatccaaaaaatt 27784350
>dbj|AP005823.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0663F07 Length = 159046 Score = 38.2 bits (19), Expect = 2.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 24 acacaaaatccaaaaaatt 42 ||||||||||||||||||| Sbjct: 69701 acacaaaatccaaaaaatt 69683
>dbj|AB024038.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MTC11 Length = 83859 Score = 38.2 bits (19), Expect = 2.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 22 ttacacaaaatccaaaaaa 40 ||||||||||||||||||| Sbjct: 67813 ttacacaaaatccaaaaaa 67831
>gb|AC024871.1|AC024871 Caenorhabditis elegans clone Y75D11A, complete sequence Length = 33011 Score = 38.2 bits (19), Expect = 2.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 28 aaaatccaaaaaattattt 46 ||||||||||||||||||| Sbjct: 18290 aaaatccaaaaaattattt 18272
>dbj|AP002392.3| Homo sapiens genomic DNA, chromosome 11q clone:RP11-691F15, complete sequences Length = 169212 Score = 38.2 bits (19), Expect = 2.6 Identities = 22/23 (95%) Strand = Plus / Minus Query: 21 tttacacaaaatccaaaaaatta 43 |||||| |||||||||||||||| Sbjct: 108237 tttacaaaaaatccaaaaaatta 108215 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,041,267 Number of Sequences: 3902068 Number of extensions: 1041267 Number of successful extensions: 92554 Number of sequences better than 10.0: 37 Number of HSP's better than 10.0 without gapping: 37 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 92438 Number of HSP's gapped (non-prelim): 116 length of query: 67 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 46 effective length of database: 17,151,101,840 effective search space: 788950684640 effective search space used: 788950684640 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)