ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart06f07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_738647.1| Plasmodium chabaudi chabaudi hypothetical prote... 42 0.16
2ref|XM_734661.1| Plasmodium chabaudi chabaudi hypothetical prote... 42 0.16
3gb|AC093731.2| Homo sapiens BAC clone RP11-12L16 from 2, complet... 42 0.16
4emb|AL953892.7| Zebrafish DNA sequence from clone CH211-209C6 in... 42 0.16
5ref|XM_712170.1| Candida albicans SC5314 acetyl coenzyme A trans... 40 0.65
6ref|XM_712094.1| Candida albicans SC5314 acetyl coenzyme A trans... 40 0.65
7gb|AY371697.2| Homo sapiens integrin, alpha 8 (ITGA8) gene, comp... 40 0.65
8emb|AL590636.12| Human DNA sequence from clone RP11-50E19 on chr... 40 0.65
9dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 0.65
10gb|AC008310.5|AC008310 Drosophila melanogaster, chromosome 3R, r... 40 0.65
11gb|AC007469.7|AC007469 Drosophila melanogaster, chromosome 3R, r... 40 0.65
12emb|BX119902.4| Zebrafish DNA sequence from clone CH211-137I24 i... 40 0.65
13gb|AF483826.1| Plasmodium falciparum variant surface antigen rif... 40 0.65
14emb|CR936482.7| Zebrafish DNA sequence from clone DKEY-166F24 in... 40 0.65
15gb|AE003779.2| Drosophila melanogaster chromosome 3R, section 11... 40 0.65
16gb|BC084395.1| Xenopus laevis cDNA clone IMAGE:6957035 38 2.6
17gb|AF067615.1| Caenorhabditis elegans cosmid T05C7, complete seq... 38 2.6
18gb|AF078788.1| Caenorhabditis elegans cosmid ZC190, complete seq... 38 2.6
19gb|AC024209.1| Caenorhabditis elegans cosmid Y75D11A, complete s... 38 2.6
20gb|AC182674.2| Populus trichocarpa clone Pop1-27N13, complete se... 38 2.6
21emb|AJ865302.1| Cocos nucifera microsatellite DNA, clone CnCir 219 38 2.6
22gb|AF025459.1| Caenorhabditis elegans fosmid H14A12, complete se... 38 2.6
23gb|U23413.1| Caenorhabditis elegans cosmid B0353, complete sequence 38 2.6
24gb|AC008581.11| Homo sapiens chromosome 5 clone CTC-564N23, comp... 38 2.6
25emb|AL139258.13| Human DNA sequence from clone RP5-817C23 on chr... 38 2.6
26emb|BX908733.14| Zebrafish DNA sequence from clone CH211-190N7 i... 38 2.6
27gb|AC139345.8| Papio anubis clone rp41-256p17, complete sequence 38 2.6
28gb|AC110616.4| Homo sapiens BAC clone RP11-597I10 from 4, comple... 38 2.6
29gb|AC006528.5| Arabidopsis thaliana chromosome 2 clone F9B22 map... 38 2.6
30gb|AC069548.6| Homo sapiens chromosome 10 clone RP11-522H2, comp... 38 2.6
31gb|AC096768.3| Homo sapiens BAC clone RP11-722P15 from 4, comple... 38 2.6
32gb|AF067944.1| Caenorhabditis elegans cosmid K10C9, complete seq... 38 2.6
33dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 38 2.6
34dbj|AP005823.3| Oryza sativa (japonica cultivar-group) genomic D... 38 2.6
35dbj|AB024038.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 38 2.6
36gb|AC024871.1|AC024871 Caenorhabditis elegans clone Y75D11A, com... 38 2.6
37dbj|AP002392.3| Homo sapiens genomic DNA, chromosome 11q clone:R... 38 2.6

>ref|XM_738647.1| Plasmodium chabaudi chabaudi hypothetical protein (PC000222.05.0)
           partial mRNA
          Length = 348

 Score = 42.1 bits (21), Expect = 0.16
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 20  ttttacacaaaatccaaaaaa 40
           |||||||||||||||||||||
Sbjct: 98  ttttacacaaaatccaaaaaa 118



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>ref|XM_734661.1| Plasmodium chabaudi chabaudi hypothetical protein (PC302074.00.0)
           partial mRNA
          Length = 429

 Score = 42.1 bits (21), Expect = 0.16
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 20  ttttacacaaaatccaaaaaa 40
           |||||||||||||||||||||
Sbjct: 98  ttttacacaaaatccaaaaaa 118



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>gb|AC093731.2| Homo sapiens BAC clone RP11-12L16 from 2, complete sequence
          Length = 190686

 Score = 42.1 bits (21), Expect = 0.16
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 23    tacacaaaatccaaaaaatta 43
             |||||||||||||||||||||
Sbjct: 96261 tacacaaaatccaaaaaatta 96241



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>emb|AL953892.7| Zebrafish DNA sequence from clone CH211-209C6 in linkage group 21,
             complete sequence
          Length = 202472

 Score = 42.1 bits (21), Expect = 0.16
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 23    tacacaaaatccaaaaaatta 43
             |||||||||||||||||||||
Sbjct: 37652 tacacaaaatccaaaaaatta 37672



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>ref|XM_712170.1| Candida albicans SC5314 acetyl coenzyme A transporter
           (CaO19_11263), mRNA
          Length = 1662

 Score = 40.1 bits (20), Expect = 0.65
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 28  aaaatccaaaaaattattta 47
           ||||||||||||||||||||
Sbjct: 491 aaaatccaaaaaattattta 510



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>ref|XM_712094.1| Candida albicans SC5314 acetyl coenzyme A transporter (CaO19_3782),
           mRNA
          Length = 1662

 Score = 40.1 bits (20), Expect = 0.65
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 28  aaaatccaaaaaattattta 47
           ||||||||||||||||||||
Sbjct: 491 aaaatccaaaaaattattta 510



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>gb|AY371697.2| Homo sapiens integrin, alpha 8 (ITGA8) gene, complete cds
          Length = 206310

 Score = 40.1 bits (20), Expect = 0.65
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 33     ccaaaaaattatttagcatc 52
              ||||||||||||||||||||
Sbjct: 151720 ccaaaaaattatttagcatc 151701



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>emb|AL590636.12| Human DNA sequence from clone RP11-50E19 on chromosome 10 Contains the 3'
              end of the ITGA8 gene for integrin alpha 8, complete
              sequence
          Length = 141790

 Score = 40.1 bits (20), Expect = 0.65
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 33     ccaaaaaattatttagcatc 52
              ||||||||||||||||||||
Sbjct: 112942 ccaaaaaattatttagcatc 112961



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 0.65
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 29       aaatccaaaaaattatttag 48
                ||||||||||||||||||||
Sbjct: 12001949 aaatccaaaaaattatttag 12001930



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>gb|AC008310.5|AC008310 Drosophila melanogaster, chromosome 3R, region 100C-100D, BAC clone
             BACR16C04, complete sequence
          Length = 159528

 Score = 40.1 bits (20), Expect = 0.65
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 30    aatccaaaaaattatttagc 49
             ||||||||||||||||||||
Sbjct: 57034 aatccaaaaaattatttagc 57053



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>gb|AC007469.7|AC007469 Drosophila melanogaster, chromosome 3R, region 100D1-100F2, BAC clone
            BACR48C22, complete sequence
          Length = 181446

 Score = 40.1 bits (20), Expect = 0.65
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 30   aatccaaaaaattatttagc 49
            ||||||||||||||||||||
Sbjct: 6669 aatccaaaaaattatttagc 6688



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>emb|BX119902.4| Zebrafish DNA sequence from clone CH211-137I24 in linkage group 5,
              complete sequence
          Length = 170241

 Score = 40.1 bits (20), Expect = 0.65
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 25     cacaaaatccaaaaaattat 44
              ||||||||||||||||||||
Sbjct: 101337 cacaaaatccaaaaaattat 101356



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>gb|AF483826.1| Plasmodium falciparum variant surface antigen rifin (rif58) gene,
           partial cds
          Length = 1296

 Score = 40.1 bits (20), Expect = 0.65
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 29  aaatccaaaaaattatttag 48
           ||||||||||||||||||||
Sbjct: 508 aaatccaaaaaattatttag 527



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>emb|CR936482.7| Zebrafish DNA sequence from clone DKEY-166F24 in linkage group 17,
             complete sequence
          Length = 39394

 Score = 40.1 bits (20), Expect = 0.65
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 18    tcttttacacaaaatccaaa 37
             ||||||||||||||||||||
Sbjct: 15308 tcttttacacaaaatccaaa 15327



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>gb|AE003779.2| Drosophila melanogaster chromosome 3R, section 117 of 118 of the
             complete sequence
          Length = 232050

 Score = 40.1 bits (20), Expect = 0.65
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 30    aatccaaaaaattatttagc 49
             ||||||||||||||||||||
Sbjct: 45941 aatccaaaaaattatttagc 45960



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>gb|BC084395.1| Xenopus laevis cDNA clone IMAGE:6957035
          Length = 2986

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 7   agcagggaccctcttttac 25
           |||||||||||||||||||
Sbjct: 196 agcagggaccctcttttac 214



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>gb|AF067615.1| Caenorhabditis elegans cosmid T05C7, complete sequence
          Length = 35033

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 28    aaaatccaaaaaattattt 46
             |||||||||||||||||||
Sbjct: 17229 aaaatccaaaaaattattt 17211



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>gb|AF078788.1| Caenorhabditis elegans cosmid ZC190, complete sequence
          Length = 39057

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 28    aaaatccaaaaaattattt 46
             |||||||||||||||||||
Sbjct: 28469 aaaatccaaaaaattattt 28451



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>gb|AC024209.1| Caenorhabditis elegans cosmid Y75D11A, complete sequence
          Length = 33011

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 28    aaaatccaaaaaattattt 46
             |||||||||||||||||||
Sbjct: 18290 aaaatccaaaaaattattt 18272



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>gb|AC182674.2| Populus trichocarpa clone Pop1-27N13, complete sequence
          Length = 118702

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 28    aaaatccaaaaaattattt 46
             |||||||||||||||||||
Sbjct: 25839 aaaatccaaaaaattattt 25821



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>emb|AJ865302.1| Cocos nucifera microsatellite DNA, clone CnCir 219
          Length = 415

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 26  acaaaatccaaaaaattat 44
           |||||||||||||||||||
Sbjct: 244 acaaaatccaaaaaattat 226



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>gb|AF025459.1| Caenorhabditis elegans fosmid H14A12, complete sequence
          Length = 24054

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 28    aaaatccaaaaaattattt 46
             |||||||||||||||||||
Sbjct: 15552 aaaatccaaaaaattattt 15570



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>gb|U23413.1| Caenorhabditis elegans cosmid B0353, complete sequence
          Length = 26112

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 28   aaaatccaaaaaattattt 46
            |||||||||||||||||||
Sbjct: 5251 aaaatccaaaaaattattt 5233



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>gb|AC008581.11| Homo sapiens chromosome 5 clone CTC-564N23, complete sequence
          Length = 198564

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 23     tacacaaaatccaaaaaattatt 45
              |||||||||| ||||||||||||
Sbjct: 139243 tacacaaaatacaaaaaattatt 139265



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>emb|AL139258.13| Human DNA sequence from clone RP5-817C23 on chromosome 1p31.3-32.2
             Contains a heterogeneous nuclear ribonucleoprotein C
             (C1/C2) (HNRPC) pseudogene, complete sequence
          Length = 100369

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 17    ctcttttacacaaaatcca 35
             |||||||||||||||||||
Sbjct: 54823 ctcttttacacaaaatcca 54805



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>emb|BX908733.14| Zebrafish DNA sequence from clone CH211-190N7 in linkage group 22,
              complete sequence
          Length = 153031

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 28     aaaatccaaaaaattattt 46
              |||||||||||||||||||
Sbjct: 128182 aaaatccaaaaaattattt 128200



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>gb|AC139345.8| Papio anubis clone rp41-256p17, complete sequence
          Length = 179810

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 28     aaaatccaaaaaattattt 46
              |||||||||||||||||||
Sbjct: 151036 aaaatccaaaaaattattt 151018



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>gb|AC110616.4| Homo sapiens BAC clone RP11-597I10 from 4, complete sequence
          Length = 80656

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 26    acaaaatccaaaaaattat 44
             |||||||||||||||||||
Sbjct: 53921 acaaaatccaaaaaattat 53939



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>gb|AC006528.5| Arabidopsis thaliana chromosome 2 clone F9B22 map mi398, complete
             sequence
          Length = 95765

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 22    ttacacaaaatccaaaaaa 40
             |||||||||||||||||||
Sbjct: 61668 ttacacaaaatccaaaaaa 61686



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>gb|AC069548.6| Homo sapiens chromosome 10 clone RP11-522H2, complete sequence
          Length = 131909

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 28    aaaatccaaaaaattattt 46
             |||||||||||||||||||
Sbjct: 48397 aaaatccaaaaaattattt 48415



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>gb|AC096768.3| Homo sapiens BAC clone RP11-722P15 from 4, complete sequence
          Length = 180430

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 21    tttacacaaaatccaaaaaatta 43
             |||||||||||| ||||||||||
Sbjct: 82832 tttacacaaaatacaaaaaatta 82854



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>gb|AF067944.1| Caenorhabditis elegans cosmid K10C9, complete sequence
          Length = 34348

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 28    aaaatccaaaaaattattt 46
             |||||||||||||||||||
Sbjct: 15112 aaaatccaaaaaattattt 15094



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 24       acacaaaatccaaaaaatt 42
                |||||||||||||||||||
Sbjct: 27784368 acacaaaatccaaaaaatt 27784350



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>dbj|AP005823.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0663F07
          Length = 159046

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 24    acacaaaatccaaaaaatt 42
             |||||||||||||||||||
Sbjct: 69701 acacaaaatccaaaaaatt 69683



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>dbj|AB024038.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MTC11
          Length = 83859

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 22    ttacacaaaatccaaaaaa 40
             |||||||||||||||||||
Sbjct: 67813 ttacacaaaatccaaaaaa 67831



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>gb|AC024871.1|AC024871 Caenorhabditis elegans clone Y75D11A, complete sequence
          Length = 33011

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 28    aaaatccaaaaaattattt 46
             |||||||||||||||||||
Sbjct: 18290 aaaatccaaaaaattattt 18272



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>dbj|AP002392.3| Homo sapiens genomic DNA, chromosome 11q clone:RP11-691F15, complete
              sequences
          Length = 169212

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 21     tttacacaaaatccaaaaaatta 43
              |||||| ||||||||||||||||
Sbjct: 108237 tttacaaaaaatccaaaaaatta 108215


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,041,267
Number of Sequences: 3902068
Number of extensions: 1041267
Number of successful extensions: 92554
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 92438
Number of HSP's gapped (non-prelim): 116
length of query: 67
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 46
effective length of database: 17,151,101,840
effective search space: 788950684640
effective search space used: 788950684640
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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