>HM13_MOUSE (Q9D8V0) Minor histocompatibility antigen H13 (EC 3.4.99.-) (Signal|
           peptide peptidase) (Presenilin-like protein 3)
          Length = 378

 Score = 44.3 bits (103), Expect = 1e-04
 Identities = 23/67 (34%), Positives = 37/67 (55%)
 Frame = -2

Query: 447 GMTATIVVMNWFQAA*PALLYIVPGVTGFVAVHSLWNGEVKPLLEFTETQPXXXXXXXXX 268
           G+  TI +M+ F+ A PALLY+VP   GF  + +L  GEV  +  + E+ P         
Sbjct: 301 GLGLTIFIMHIFKHAQPALLYLVPACIGFPVLVALAKGEVAEMFSYEESNPKDPAAETES 360

Query: 267 XEDSSQS 247
            E+S+++
Sbjct: 361 KEESTEA 367

>HM13_HUMAN (Q8TCT9) Minor histocompatibility antigen H13 (EC 3.4.99.-) (Signal|
           peptide peptidase) (Presenilin-like protein 3) (hIMP1
           protein)
          Length = 377

 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 21/51 (41%), Positives = 31/51 (60%)
 Frame = -2

Query: 447 GMTATIVVMNWFQAA*PALLYIVPGVTGFVAVHSLWNGEVKPLLEFTETQP 295
           G+  TI +M+ F+ A PALLY+VP   GF  + +L  GEV  +  + E+ P
Sbjct: 301 GLGLTIFIMHIFKHAQPALLYLVPACIGFPVLVALAKGEVTEMFSYEESNP 351

>YJ95_CAEEL (P49049) Hypothetical protein T05E11.5 in chromosome IV|
          Length = 468

 Score = 33.9 bits (76), Expect = 0.19
 Identities = 18/50 (36%), Positives = 30/50 (60%)
 Frame = -2

Query: 447 GMTATIVVMNWFQAA*PALLYIVPGVTGFVAVHSLWNGEVKPLLEFTETQ 298
           G+  T+ VM+ F+AA PALLY+VP       + ++  GE+  L  + E++
Sbjct: 401 GLFITMAVMHHFKAAQPALLYLVPCCLFVPLLLAVIRGELSALWNYDESR 450

>YKK0_YEAST (P34248) Hypothetical 67.5 kDa protein in APE1/LAP4-CWP1 intergenic|
           region
          Length = 587

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -2

Query: 444 MTATIVVMNWFQAA*PALLYIVPGVTGFVAVHSLWNGEVKPLLEF 310
           + + +V ++ F  A PALLYIVP +     + + WN + K    F
Sbjct: 462 LVSAMVSLSIFNTAQPALLYIVPSLLISTILVACWNKDFKQFWNF 506

>PHY2_SYNY3 (Q55434) Phytochrome-like protein cph2 (Bacteriophytochrome cph2)|
          Length = 1276

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -2

Query: 396 ALLYIVPGVTGFVAVHSLWN 337
           A+LYI P +TG VA H  WN
Sbjct: 238 AVLYIAPDLTGSVAQHYQWN 257

>GYRB_MYCCT (P50028) DNA gyrase subunit B (EC 5.99.1.3)|
          Length = 643

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -2

Query: 186 GRGEPNQSRISNRLYDPENRKMIELFVSKG 97
           G GE N  ++     DP+NRK+I++ +S G
Sbjct: 572 GLGEMNADQLWQTTMDPKNRKIIQVTISDG 601


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,853,356
Number of Sequences: 219361
Number of extensions: 835922
Number of successful extensions: 1801
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1801
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2677159704
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)