ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart06f04 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_468370.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1099 Score = 157 bits (79), Expect = 4e-35 Identities = 124/139 (89%) Strand = Plus / Minus Query: 189 gccgtggcgctccataacacggcgcatggccagcgccgccgcctcgctcgcccgcagcgt 248 |||||| |||||||| || || ||||| |||||||||||||||||||||||||||||||| Sbjct: 887 gccgtgccgctccatgacccgccgcatcgccagcgccgccgcctcgctcgcccgcagcgt 828 Query: 249 gccactcgccatgagcgccgcaaactctctcatcacctcttcctgcaccttccccctcgc 308 || |||||||||| |||||| ||||| | ||||||||| |||||||||||||||||||| Sbjct: 827 cccgctcgccatgatcgccgcgaactcccgcatcacctcctcctgcaccttccccctcgc 768 Query: 309 gcttccgagagggtcagcc 327 || ||||| ||||||||| Sbjct: 767 gccgccgagcgggtcagcc 749
>ref|XM_507547.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBa0053L11.37 mRNA Length = 1151 Score = 157 bits (79), Expect = 4e-35 Identities = 124/139 (89%) Strand = Plus / Minus Query: 189 gccgtggcgctccataacacggcgcatggccagcgccgccgcctcgctcgcccgcagcgt 248 |||||| |||||||| || || ||||| |||||||||||||||||||||||||||||||| Sbjct: 865 gccgtgccgctccatgacccgccgcatcgccagcgccgccgcctcgctcgcccgcagcgt 806 Query: 249 gccactcgccatgagcgccgcaaactctctcatcacctcttcctgcaccttccccctcgc 308 || |||||||||| |||||| ||||| | ||||||||| |||||||||||||||||||| Sbjct: 805 cccgctcgccatgatcgccgcgaactcccgcatcacctcctcctgcaccttccccctcgc 746 Query: 309 gcttccgagagggtcagcc 327 || ||||| ||||||||| Sbjct: 745 gccgccgagcgggtcagcc 727
>ref|XM_507041.2| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBa0053L11.37 mRNA Length = 1218 Score = 157 bits (79), Expect = 4e-35 Identities = 124/139 (89%) Strand = Plus / Minus Query: 189 gccgtggcgctccataacacggcgcatggccagcgccgccgcctcgctcgcccgcagcgt 248 |||||| |||||||| || || ||||| |||||||||||||||||||||||||||||||| Sbjct: 890 gccgtgccgctccatgacccgccgcatcgccagcgccgccgcctcgctcgcccgcagcgt 831 Query: 249 gccactcgccatgagcgccgcaaactctctcatcacctcttcctgcaccttccccctcgc 308 || |||||||||| |||||| ||||| | ||||||||| |||||||||||||||||||| Sbjct: 830 cccgctcgccatgatcgccgcgaactcccgcatcacctcctcctgcaccttccccctcgc 771 Query: 309 gcttccgagagggtcagcc 327 || ||||| ||||||||| Sbjct: 770 gccgccgagcgggtcagcc 752
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 157 bits (79), Expect = 4e-35 Identities = 124/139 (89%) Strand = Plus / Plus Query: 189 gccgtggcgctccataacacggcgcatggccagcgccgccgcctcgctcgcccgcagcgt 248 |||||| |||||||| || || ||||| |||||||||||||||||||||||||||||||| Sbjct: 34898407 gccgtgccgctccatgacccgccgcatcgccagcgccgccgcctcgctcgcccgcagcgt 34898466 Query: 249 gccactcgccatgagcgccgcaaactctctcatcacctcttcctgcaccttccccctcgc 308 || |||||||||| |||||| ||||| | ||||||||| |||||||||||||||||||| Sbjct: 34898467 cccgctcgccatgatcgccgcgaactcccgcatcacctcctcctgcaccttccccctcgc 34898526 Query: 309 gcttccgagagggtcagcc 327 || ||||| ||||||||| Sbjct: 34898527 gccgccgagcgggtcagcc 34898545 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 374 ccttcttctctccttcttgc 393 |||||||||||||||||||| Sbjct: 19906630 ccttcttctctccttcttgc 19906611 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 331 gccggcgccgccgcggcggc 350 |||||||||||||||||||| Sbjct: 6341431 gccggcgccgccgcggcggc 6341450 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 331 gccggcgccgccgcggcggc 350 |||||||||||||||||||| Sbjct: 5549382 gccggcgccgccgcggcggc 5549363
>dbj|AP005691.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0053L11 Length = 147123 Score = 157 bits (79), Expect = 4e-35 Identities = 124/139 (89%) Strand = Plus / Plus Query: 189 gccgtggcgctccataacacggcgcatggccagcgccgccgcctcgctcgcccgcagcgt 248 |||||| |||||||| || || ||||| |||||||||||||||||||||||||||||||| Sbjct: 120002 gccgtgccgctccatgacccgccgcatcgccagcgccgccgcctcgctcgcccgcagcgt 120061 Query: 249 gccactcgccatgagcgccgcaaactctctcatcacctcttcctgcaccttccccctcgc 308 || |||||||||| |||||| ||||| | ||||||||| |||||||||||||||||||| Sbjct: 120062 cccgctcgccatgatcgccgcgaactcccgcatcacctcctcctgcaccttccccctcgc 120121 Query: 309 gcttccgagagggtcagcc 327 || ||||| ||||||||| Sbjct: 120122 gccgccgagcgggtcagcc 120140
>dbj|AP004120.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1293_E04 Length = 118192 Score = 157 bits (79), Expect = 4e-35 Identities = 124/139 (89%) Strand = Plus / Plus Query: 189 gccgtggcgctccataacacggcgcatggccagcgccgccgcctcgctcgcccgcagcgt 248 |||||| |||||||| || || ||||| |||||||||||||||||||||||||||||||| Sbjct: 57904 gccgtgccgctccatgacccgccgcatcgccagcgccgccgcctcgctcgcccgcagcgt 57963 Query: 249 gccactcgccatgagcgccgcaaactctctcatcacctcttcctgcaccttccccctcgc 308 || |||||||||| |||||| ||||| | ||||||||| |||||||||||||||||||| Sbjct: 57964 cccgctcgccatgatcgccgcgaactcccgcatcacctcctcctgcaccttccccctcgc 58023 Query: 309 gcttccgagagggtcagcc 327 || ||||| ||||||||| Sbjct: 58024 gccgccgagcgggtcagcc 58042
>dbj|AK104442.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-210-B11, full insert sequence Length = 1151 Score = 157 bits (79), Expect = 4e-35 Identities = 124/139 (89%) Strand = Plus / Minus Query: 189 gccgtggcgctccataacacggcgcatggccagcgccgccgcctcgctcgcccgcagcgt 248 |||||| |||||||| || || ||||| |||||||||||||||||||||||||||||||| Sbjct: 865 gccgtgccgctccatgacccgccgcatcgccagcgccgccgcctcgctcgcccgcagcgt 806 Query: 249 gccactcgccatgagcgccgcaaactctctcatcacctcttcctgcaccttccccctcgc 308 || |||||||||| |||||| ||||| | ||||||||| |||||||||||||||||||| Sbjct: 805 cccgctcgccatgatcgccgcgaactcccgcatcacctcctcctgcaccttccccctcgc 746 Query: 309 gcttccgagagggtcagcc 327 || ||||| ||||||||| Sbjct: 745 gccgccgagcgggtcagcc 727
>dbj|AK102943.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033114L12, full insert sequence Length = 1099 Score = 157 bits (79), Expect = 4e-35 Identities = 124/139 (89%) Strand = Plus / Minus Query: 189 gccgtggcgctccataacacggcgcatggccagcgccgccgcctcgctcgcccgcagcgt 248 |||||| |||||||| || || ||||| |||||||||||||||||||||||||||||||| Sbjct: 887 gccgtgccgctccatgacccgccgcatcgccagcgccgccgcctcgctcgcccgcagcgt 828 Query: 249 gccactcgccatgagcgccgcaaactctctcatcacctcttcctgcaccttccccctcgc 308 || |||||||||| |||||| ||||| | ||||||||| |||||||||||||||||||| Sbjct: 827 cccgctcgccatgatcgccgcgaactcccgcatcacctcctcctgcaccttccccctcgc 768 Query: 309 gcttccgagagggtcagcc 327 || ||||| ||||||||| Sbjct: 767 gccgccgagcgggtcagcc 749
>dbj|AK060071.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-A06, full insert sequence Length = 1218 Score = 157 bits (79), Expect = 4e-35 Identities = 124/139 (89%) Strand = Plus / Minus Query: 189 gccgtggcgctccataacacggcgcatggccagcgccgccgcctcgctcgcccgcagcgt 248 |||||| |||||||| || || ||||| |||||||||||||||||||||||||||||||| Sbjct: 890 gccgtgccgctccatgacccgccgcatcgccagcgccgccgcctcgctcgcccgcagcgt 831 Query: 249 gccactcgccatgagcgccgcaaactctctcatcacctcttcctgcaccttccccctcgc 308 || |||||||||| |||||| ||||| | ||||||||| |||||||||||||||||||| Sbjct: 830 cccgctcgccatgatcgccgcgaactcccgcatcacctcctcctgcaccttccccctcgc 771 Query: 309 gcttccgagagggtcagcc 327 || ||||| ||||||||| Sbjct: 770 gccgccgagcgggtcagcc 752
>gb|AY107896.1| Zea mays PCO141631 mRNA sequence Length = 541 Score = 153 bits (77), Expect = 6e-34 Identities = 132/149 (88%), Gaps = 1/149 (0%) Strand = Plus / Minus Query: 179 tggcgccgtcgccgtggcgctccataacacggcgcatggccagcgccgccgcctcgctcg 238 ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| | Sbjct: 281 tggcgccgtcgccgtggcgctccatgacccggcgcatggccagcgccgccgcctcgctgg 222 Query: 239 cccgcagcgtgccactcgccatgagcgccgcaaactctctcatcacctcttcctgcacct 298 |||| || || || || ||||||| ||||| ||||| |||||||||| |||||||||| Sbjct: 221 cccgtag-gtaccgctggccatgatggccgcgaactccttcatcacctcctcctgcacct 163 Query: 299 tccccctcgcgcttccgagagggtcagcc 327 ||||||| ||||| ||||| ||||||||| Sbjct: 162 tccccctggcgctcccgagcgggtcagcc 134
>gb|AY596547.1| Saccharum officinarum clone SCAGLR1043G02, complete sequence Length = 984 Score = 143 bits (72), Expect = 6e-31 Identities = 129/148 (87%) Strand = Plus / Minus Query: 179 tggcgccgtcgccgtggcgctccataacacggcgcatggccagcgccgccgcctcgctcg 238 |||||| |||||| ||||||||||| || ||||||||||||||||||||||||||||| | Sbjct: 895 tggcgcggtcgccatggcgctccatgacccggcgcatggccagcgccgccgcctcgctgg 836 Query: 239 cccgcagcgtgccactcgccatgagcgccgcaaactctctcatcacctcttcctgcacct 298 ||| |||||||| || ||||||| |||| ||||| ||||||||||| |||||||||| Sbjct: 835 ccccaagcgtgccgctggccatgatgcccgcgaactccctcatcacctcctcctgcacct 776 Query: 299 tccccctcgcgcttccgagagggtcagc 326 | ||||| ||||| ||||| |||||||| Sbjct: 775 ttcccctggcgctcccgagcgggtcagc 748
>gb|AY526625.1| Prunus avium clone EMPaS09 microsatellite sequence Length = 526 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 323 cagccatagccggcgccgccg 343 ||||||||||||||||||||| Sbjct: 97 cagccatagccggcgccgccg 117
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 330 agccggcgccgccgcggcggc 350 ||||||||||||||||||||| Sbjct: 3859268 agccggcgccgccgcggcggc 3859248
>gb|AC084365.16| Homo sapiens 12 BAC RP11-632B21 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 188629 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 147 taaaatagtttcaggtaacta 167 ||||||||||||||||||||| Sbjct: 16765 taaaatagtttcaggtaacta 16785
>gb|AC097459.3| Homo sapiens BAC clone RP11-13F20 from 4, complete sequence Length = 161519 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 376 ttcttctctccttcttgcttg 396 ||||||||||||||||||||| Sbjct: 105888 ttcttctctccttcttgcttg 105908
>gb|AY826901.1| Heterocapsa triquetra clone HTLHC3471 chloroplast light harvesting complex protein mRNA, complete cds; nuclear gene for chloroplast product Length = 1087 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 403 gagccgcccggcggcgccgca 423 ||||||||||||||||||||| Sbjct: 141 gagccgcccggcggcgccgca 161
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 218 ccagcgccgccgcctcgctcgcccg 242 ||||| ||||||||||||||||||| Sbjct: 3898220 ccagcaccgccgcctcgctcgcccg 3898244 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 331 gccggcgccgccgcggcggc 350 |||||||||||||||||||| Sbjct: 4763266 gccggcgccgccgcggcggc 4763247 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 216 ggccagcgccgccgcctcgc 235 |||||||||||||||||||| Sbjct: 3839551 ggccagcgccgccgcctcgc 3839532 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 182 cgccgtcgccgtggcgctcc 201 |||||||||||||||||||| Sbjct: 885593 cgccgtcgccgtggcgctcc 885612
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 182 cgccgtcgccgtggcgctcca 202 ||||||||||||||||||||| Sbjct: 1754548 cgccgtcgccgtggcgctcca 1754528
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 216 ggccagcgccgccgcctcgctcgcc 240 ||||||||||||||||||| ||||| Sbjct: 2111787 ggccagcgccgccgcctcgatcgcc 2111811
>gb|AY662656.1| Homo sapiens SKCG1 (SKCG1) mRNA, complete cds Length = 2090 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 33 atgtgaacaaatcagacaaataaa 56 ||||||| |||||||||||||||| Sbjct: 2002 atgtgaagaaatcagacaaataaa 1979
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 216 ggccagcgccgccgcctcgc 235 |||||||||||||||||||| Sbjct: 2462039 ggccagcgccgccgcctcgc 2462058
>ref|XM_481984.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1017 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 331 gccggcgccgccgcggcggc 350 |||||||||||||||||||| Sbjct: 23 gccggcgccgccgcggcggc 4
>ref|XM_464617.1| Oryza sativa (japonica cultivar-group), mRNA Length = 270 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 331 gccggcgccgccgcggcggc 350 |||||||||||||||||||| Sbjct: 98 gccggcgccgccgcggcggc 79
>ref|XM_464495.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1362 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 331 gccggcgccgccgcggcggc 350 |||||||||||||||||||| Sbjct: 1210 gccggcgccgccgcggcggc 1191
>ref|NM_196531.1| Oryza sativa (japonica cultivar-group) unknown protein (OSJNBa0053G13.5), mRNA Length = 1458 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 330 agccggcgccgccgcggcgg 349 |||||||||||||||||||| Sbjct: 785 agccggcgccgccgcggcgg 804
>gb|AC108763.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone OSJNBb0004A05, complete sequence Length = 157913 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 220 agcgccgccgcctcgctcgc 239 |||||||||||||||||||| Sbjct: 87686 agcgccgccgcctcgctcgc 87705
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 216 ggccagcgccgccgcctcgctcgc 239 ||||||||||||||||||| |||| Sbjct: 2174126 ggccagcgccgccgcctcggtcgc 2174149
>gb|AC120533.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0081F16 map E50055S, complete sequence Length = 148220 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 331 gccggcgccgccgcggcggc 350 |||||||||||||||||||| Sbjct: 12492 gccggcgccgccgcggcggc 12511
>gb|AC159435.1| Trypanosoma brucei chromosome 8 clone RPCI93-29H22, complete sequence Length = 148464 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 281 tcacctcttcctgcaccttc 300 |||||||||||||||||||| Sbjct: 48022 tcacctcttcctgcaccttc 48041
>gb|CP000071.1| Trypanosoma brucei chromosome 8, complete sequence Length = 2481190 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 281 tcacctcttcctgcaccttc 300 |||||||||||||||||||| Sbjct: 1258245 tcacctcttcctgcaccttc 1258264
>gb|AC131678.4| Mus musculus BAC clone RP23-333L1 from chromosome 3, complete sequence Length = 203750 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 38 aacaaatcagacaaataaaa 57 |||||||||||||||||||| Sbjct: 61169 aacaaatcagacaaataaaa 61150
>gb|AC147895.2| Xenopus tropicalis clone CH216-3D8, complete sequence Length = 212769 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 50 aaataaaattgagttccatg 69 |||||||||||||||||||| Sbjct: 96928 aaataaaattgagttccatg 96909
>gb|AC103550.13| Oryza sativa chromosome 3 BAC OSJNBa0079G12 genomic sequence, complete sequence Length = 163712 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 331 gccggcgccgccgcggcggc 350 |||||||||||||||||||| Sbjct: 50329 gccggcgccgccgcggcggc 50310
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 gcgccgccgcctcgctcgcc 240 |||||||||||||||||||| Sbjct: 2204810 gcgccgccgcctcgctcgcc 2204791
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 gcgccgccgcctcgctcgcc 240 |||||||||||||||||||| Sbjct: 3891135 gcgccgccgcctcgctcgcc 3891116 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 331 gccggcgccgccgcggcggc 350 |||||||||||||||||||| Sbjct: 1414566 gccggcgccgccgcggcggc 1414547
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 331 gccggcgccgccgcggcggc 350 |||||||||||||||||||| Sbjct: 29721048 gccggcgccgccgcggcggc 29721067
>ref|XM_819320.1| Trypanosoma brucei TREU927 clone RPCI93-29H22 hypothetical protein (Tb927.8.4240) partial mRNA Length = 5070 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 281 tcacctcttcctgcaccttc 300 |||||||||||||||||||| Sbjct: 4603 tcacctcttcctgcaccttc 4584
>gb|AC121907.3| Mus musculus BAC clone RP24-176G20 from chromosome 8, complete sequence Length = 173427 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 428 tagcagcagcagttgcagaa 447 |||||||||||||||||||| Sbjct: 52329 tagcagcagcagttgcagaa 52348
>gb|AC132467.3| Mus musculus BAC clone RP23-71E21 from chromosome 14, complete sequence Length = 191280 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 38 aacaaatcagacaaataaaa 57 |||||||||||||||||||| Sbjct: 45823 aacaaatcagacaaataaaa 45804
>gb|AC126440.3| Mus musculus BAC clone RP23-413M14 from chromosome 14, complete sequence Length = 207346 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 38 aacaaatcagacaaataaaa 57 |||||||||||||||||||| Sbjct: 11406 aacaaatcagacaaataaaa 11425
>gb|AC151915.8| Medicago truncatula clone mth2-30n12, complete sequence Length = 92346 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 39 acaaatcagacaaataaaat 58 |||||||||||||||||||| Sbjct: 36776 acaaatcagacaaataaaat 36795
>gb|AC151743.27| Medicago truncatula clone mth2-25e15, complete sequence Length = 105045 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 39 acaaatcagacaaataaaat 58 |||||||||||||||||||| Sbjct: 37403 acaaatcagacaaataaaat 37384
>emb|AL583838.7| Human DNA sequence from clone RP11-536O4 on chromosome 6, complete sequence Length = 121958 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 276 tctcatcacctcttcctgca 295 |||||||||||||||||||| Sbjct: 89152 tctcatcacctcttcctgca 89133
>gb|CP000272.1| Burkholderia xenovorans LB400 chromosome 3, complete sequence Length = 1471779 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 335 gcgccgccgcggcggctttc 354 |||||||||||||||||||| Sbjct: 162331 gcgccgccgcggcggctttc 162350
>emb|AL357080.13| Human DNA sequence from clone RP11-432L12 on chromosome 6 Contains STSs and GSSs, complete sequence Length = 172073 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 423 actagtagcagcagcagttg 442 |||||||||||||||||||| Sbjct: 37341 actagtagcagcagcagttg 37322
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence Length = 3806533 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 331 gccggcgccgccgcggcggc 350 |||||||||||||||||||| Sbjct: 1244671 gccggcgccgccgcggcggc 1244652
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 gcgccgccgcctcgctcgcc 240 |||||||||||||||||||| Sbjct: 3632953 gcgccgccgcctcgctcgcc 3632934 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 331 gccggcgccgccgcggcggc 350 |||||||||||||||||||| Sbjct: 1286500 gccggcgccgccgcggcggc 1286481
>emb|AL391034.1|SPBC800 S.pombe chromosome II cosmid SPU41410 Length = 30100 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 421 gcactagtagcagcagcagt 440 |||||||||||||||||||| Sbjct: 8150 gcactagtagcagcagcagt 8169
>gb|AC129803.3| Homo sapiens 3 BAC RP11-15N24 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 185721 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 424 ctagtagcagcagcagttgc 443 |||||||||||||||||||| Sbjct: 122610 ctagtagcagcagcagttgc 122591
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 176 tactggcgccgtcgccgtggcgct 199 ||||||||| |||||||||||||| Sbjct: 4366853 tactggcgctgtcgccgtggcgct 4366830
>gb|AE012084.1| Xanthomonas axonopodis pv. citri str. 306, section 462 of 469 of the complete genome Length = 10300 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 457 accttgctggccggcgtggc 476 |||||||||||||||||||| Sbjct: 6633 accttgctggccggcgtggc 6652
>gb|AE009904.1|AE009904 Pyrobaculum aerophilum strain IM2 section 159 of 201 of the complete genome Length = 11414 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 216 ggccagcgccgccgcctcgc 235 |||||||||||||||||||| Sbjct: 10208 ggccagcgccgccgcctcgc 10227
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 212 gcatggccagcgccgccgcctcgc 235 ||||||| |||||||||||||||| Sbjct: 2000702 gcatggcgagcgccgccgcctcgc 2000679
>ref|NM_001021012.1| Schizosaccharomyces pombe 972h- 60S ribosomal protein L37a/L43A (SPBC800.04c), partial mRNA Length = 285 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 421 gcactagtagcagcagcagt 440 |||||||||||||||||||| Sbjct: 242 gcactagtagcagcagcagt 223
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 221 gcgccgccgcctcgctcgcc 240 |||||||||||||||||||| Sbjct: 550884 gcgccgccgcctcgctcgcc 550903
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 224 ccgccgcctcgctcgcccgc 243 |||||||||||||||||||| Sbjct: 2149402 ccgccgcctcgctcgcccgc 2149421
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 182 cgccgtcgccgtggcgctcc 201 |||||||||||||||||||| Sbjct: 19522430 cgccgtcgccgtggcgctcc 19522411
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 331 gccggcgccgccgcggcggc 350 |||||||||||||||||||| Sbjct: 3007122 gccggcgccgccgcggcggc 3007141
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 330 agccggcgccgccgcggcgg 349 |||||||||||||||||||| Sbjct: 14271813 agccggcgccgccgcggcgg 14271832
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 220 agcgccgccgcctcgctcgc 239 |||||||||||||||||||| Sbjct: 19156666 agcgccgccgcctcgctcgc 19156685
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 331 gccggcgccgccgcggcggc 350 |||||||||||||||||||| Sbjct: 16885232 gccggcgccgccgcggcggc 16885213
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 331 gccggcgccgccgcggcggc 350 |||||||||||||||||||| Sbjct: 29812470 gccggcgccgccgcggcggc 29812489
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 331 gccggcgccgccgcggcggc 350 |||||||||||||||||||| Sbjct: 37116215 gccggcgccgccgcggcggc 37116234
>gb|AC027662.2|AC027662 Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0053G13, complete sequence Length = 138245 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 330 agccggcgccgccgcggcgg 349 |||||||||||||||||||| Sbjct: 19088 agccggcgccgccgcggcgg 19107
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 338 ccgccgcggcggctttctcc 357 |||||||||||||||||||| Sbjct: 8591292 ccgccgcggcggctttctcc 8591311
>gb|AE004812.1| Pseudomonas aeruginosa PAO1, section 373 of 529 of the complete genome Length = 10049 Score = 40.1 bits (20), Expect = 6.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 216 ggccagcgccgccgcctcgctcgcccgcagcg 247 ||||| |||| |||||||||||||| |||||| Sbjct: 202 ggccaccgcctccgcctcgctcgccagcagcg 233
>gb|AY007371.1| Burkholderia pseudomallei beta-ketoadipyl CoA thiolase (pcaF) gene, complete cds Length = 2454 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 gcgccgccgcctcgctcgcc 240 |||||||||||||||||||| Sbjct: 1073 gcgccgccgcctcgctcgcc 1054
>dbj|AP003289.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0683F02 Length = 153388 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 331 gccggcgccgccgcggcggc 350 |||||||||||||||||||| Sbjct: 117356 gccggcgccgccgcggcggc 117375
>dbj|AP004753.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0508B05 Length = 166165 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 374 ccttcttctctccttcttgc 393 |||||||||||||||||||| Sbjct: 84231 ccttcttctctccttcttgc 84212
>dbj|AP004085.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1267_F10 Length = 162669 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 331 gccggcgccgccgcggcggc 350 |||||||||||||||||||| Sbjct: 138818 gccggcgccgccgcggcggc 138837
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 212 gcatggccagcgccgccgcc 231 |||||||||||||||||||| Sbjct: 1289919 gcatggccagcgccgccgcc 1289938
>dbj|AP004812.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0026H03 Length = 151827 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 331 gccggcgccgccgcggcggc 350 |||||||||||||||||||| Sbjct: 94117 gccggcgccgccgcggcggc 94098
>dbj|AP005609.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0014M17 Length = 156778 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 374 ccttcttctctccttcttgc 393 |||||||||||||||||||| Sbjct: 10751 ccttcttctctccttcttgc 10732
>gb|AC102367.35| Mus musculus chromosome 3, clone RP23-211J6, complete sequence Length = 185452 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 38 aacaaatcagacaaataaaa 57 |||||||||||||||||||| Sbjct: 27623 aacaaatcagacaaataaaa 27642
>dbj|AP005817.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1118_F01 Length = 119248 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 331 gccggcgccgccgcggcggc 350 |||||||||||||||||||| Sbjct: 98597 gccggcgccgccgcggcggc 98578
>dbj|AP003913.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1484_G09 Length = 124695 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 331 gccggcgccgccgcggcggc 350 |||||||||||||||||||| Sbjct: 32243 gccggcgccgccgcggcggc 32224
>dbj|AK105560.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-128-B08, full insert sequence Length = 1362 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 331 gccggcgccgccgcggcggc 350 |||||||||||||||||||| Sbjct: 1210 gccggcgccgccgcggcggc 1191
>dbj|AK105533.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-127-G12, full insert sequence Length = 1726 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 331 gccggcgccgccgcggcggc 350 |||||||||||||||||||| Sbjct: 501 gccggcgccgccgcggcggc 482
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 466 gccggcgtggcagcagccgg 485 |||||||||||||||||||| Sbjct: 2161716 gccggcgtggcagcagccgg 2161735
>emb|AL353778.13| Human DNA sequence from clone RP11-317P15 on chromosome 1q25.2-31.2 Contains the RGS16 gene for a regulator of G-protein signalling 16, the RGS8 gene for a regulator of G-protein signalling 8 and a CpG island, complete sequence Length = 147047 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 40 caaatcagacaaataaaatt 59 |||||||||||||||||||| Sbjct: 70218 caaatcagacaaataaaatt 70237
>gb|AC006572.2|AC006572 Homo sapiens, clone hRPK.60_A_1, complete sequence Length = 179691 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 52 ataaaattgagttccatgct 71 |||||||||||||||||||| Sbjct: 147083 ataaaattgagttccatgct 147102
>dbj|AP003027.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-25I9, complete sequence Length = 167067 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 33 atgtgaacaaatcagacaaataaa 56 ||||||| |||||||||||||||| Sbjct: 109404 atgtgaagaaatcagacaaataaa 109381
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 176 tactggcgccgtcgccgtggcgct 199 ||||||||| |||||||||||||| Sbjct: 4373638 tactggcgctgtcgccgtggcgct 4373615
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 330 agccggcgccgccgcggcgg 349 |||||||||||||||||||| Sbjct: 14280055 agccggcgccgccgcggcgg 14280074
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 331 gccggcgccgccgcggcggc 350 |||||||||||||||||||| Sbjct: 3016153 gccggcgccgccgcggcggc 3016172
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 182 cgccgtcgccgtggcgctcc 201 |||||||||||||||||||| Sbjct: 19448643 cgccgtcgccgtggcgctcc 19448624
>emb|AL731759.2|CNS07YPA Oryza sativa chromosome 12, . BAC OSJNBa0009K11 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 144596 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 182 cgccgtcgccgtggcgctcc 201 |||||||||||||||||||| Sbjct: 54611 cgccgtcgccgtggcgctcc 54592
>gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome Length = 4096345 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 374 ccttcttctctccttcttgc 393 |||||||||||||||||||| Sbjct: 2168611 ccttcttctctccttcttgc 2168592
>gb|AC149216.5| Mus musculus BAC clone RP24-194H8 from 18, complete sequence Length = 193186 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 376 ttcttctctccttcttgctt 395 |||||||||||||||||||| Sbjct: 130861 ttcttctctccttcttgctt 130880
>emb|CT030137.13| Mouse DNA sequence from clone RP24-374C21 on chromosome 12, complete sequence Length = 197285 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 426 agtagcagcagcagttgcag 445 |||||||||||||||||||| Sbjct: 75491 agtagcagcagcagttgcag 75472
>gb|U41410.1|SPU41410 Schizosaccharomyces pombe cosmid 800 Length = 40438 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 421 gcactagtagcagcagcagt 440 |||||||||||||||||||| Sbjct: 8150 gcactagtagcagcagcagt 8169 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,854,061 Number of Sequences: 3902068 Number of extensions: 4854061 Number of successful extensions: 123632 Number of sequences better than 10.0: 91 Number of HSP's better than 10.0 without gapping: 93 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 118230 Number of HSP's gapped (non-prelim): 5401 length of query: 486 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 464 effective length of database: 17,147,199,772 effective search space: 7956300694208 effective search space used: 7956300694208 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
