Clone Name | rbart06f03 |
---|---|
Clone Library Name | barley_pub |
>dbj|AB009308.2| Hordeum vulgare HvPIP1;3 mRNA, complete cds Length = 1285 Score = 137 bits (69), Expect = 6e-30 Identities = 76/77 (98%), Gaps = 1/77 (1%) Strand = Plus / Minus Query: 15 aattcgatcgtcgtcccttctt-aataataatttacatacatatgcacgctggattaaat 73 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 1285 aattcgatcgtcgtcccttctttaataataatttacatacatatgcacgctggattaaat 1226 Query: 74 ggcgtgcgtggtactgg 90 ||||||||||||||||| Sbjct: 1225 ggcgtgcgtggtactgg 1209
>gb|AF366564.1| Triticum aestivum aquaporin PIP1 (Pip1) mRNA, complete cds Length = 1248 Score = 71.9 bits (36), Expect = 3e-10 Identities = 64/72 (88%), Gaps = 1/72 (1%) Strand = Plus / Minus Query: 11 aattaattcgatcgtcgtcccttcttaat-aataatttacatacatatgcacgctggatt 69 |||||| ||||||| ||| |||||||||| ||||||||||||||||||||||||| || Sbjct: 1248 aattaactcgatcgacgttccttcttaattaataatttacatacatatgcacgctccgtt 1189 Query: 70 aaatggcgtgcg 81 |||| ||||||| Sbjct: 1188 aaatcgcgtgcg 1177
>gb|AC155942.6| Mus musculus 10 BAC RP24-492L7 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 174309 Score = 44.1 bits (22), Expect = 0.063 Identities = 22/22 (100%) Strand = Plus / Plus Query: 36 taataataatttacatacatat 57 |||||||||||||||||||||| Sbjct: 29491 taataataatttacatacatat 29512
>gb|AC153156.1| Ornithorhynchus anatinus chromosome UNK clone OABb-289A1, complete sequence Length = 109794 Score = 42.1 bits (21), Expect = 0.25 Identities = 21/21 (100%) Strand = Plus / Minus Query: 41 ataatttacatacatatgcac 61 ||||||||||||||||||||| Sbjct: 95031 ataatttacatacatatgcac 95011
>gb|AC104706.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1116_F05, complete sequence Length = 119573 Score = 42.1 bits (21), Expect = 0.25 Identities = 24/25 (96%) Strand = Plus / Plus Query: 36 taataataatttacatacatatgca 60 ||||||||| ||||||||||||||| Sbjct: 27479 taataataacttacatacatatgca 27503
>emb|BX537273.16| Zebrafish DNA sequence from clone CH211-151F2 in linkage group 10, complete sequence Length = 167226 Score = 42.1 bits (21), Expect = 0.25 Identities = 21/21 (100%) Strand = Plus / Plus Query: 36 taataataatttacatacata 56 ||||||||||||||||||||| Sbjct: 60087 taataataatttacatacata 60107
>gb|AC116631.6| Homo sapiens BAC clone RP11-429B11 from 4, complete sequence Length = 125133 Score = 42.1 bits (21), Expect = 0.25 Identities = 21/21 (100%) Strand = Plus / Plus Query: 41 ataatttacatacatatgcac 61 ||||||||||||||||||||| Sbjct: 18615 ataatttacatacatatgcac 18635
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 0.25 Identities = 24/25 (96%) Strand = Plus / Minus Query: 36 taataataatttacatacatatgca 60 ||||||||| ||||||||||||||| Sbjct: 15861488 taataataacttacatacatatgca 15861464
>emb|CR361565.8| Zebrafish DNA sequence from clone CH211-242L1 in linkage group 22, complete sequence Length = 164475 Score = 42.1 bits (21), Expect = 0.25 Identities = 21/21 (100%) Strand = Plus / Plus Query: 37 aataataatttacatacatat 57 ||||||||||||||||||||| Sbjct: 30255 aataataatttacatacatat 30275
>emb|BX005014.5| Zebrafish DNA sequence from clone CH211-103E2 in linkage group 10, complete sequence Length = 160621 Score = 42.1 bits (21), Expect = 0.25 Identities = 21/21 (100%) Strand = Plus / Plus Query: 36 taataataatttacatacata 56 ||||||||||||||||||||| Sbjct: 47614 taataataatttacatacata 47634
>gb|AC117081.2| Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence Length = 183648 Score = 40.1 bits (20), Expect = 0.98 Identities = 20/20 (100%) Strand = Plus / Minus Query: 36 taataataatttacatacat 55 |||||||||||||||||||| Sbjct: 3763 taataataatttacatacat 3744
>gb|AC122907.4| Mus musculus BAC clone RP23-49I4 from chromosome 15, complete sequence Length = 233904 Score = 40.1 bits (20), Expect = 0.98 Identities = 23/24 (95%) Strand = Plus / Minus Query: 35 ttaataataatttacatacatatg 58 ||||||||||| |||||||||||| Sbjct: 205619 ttaataataatatacatacatatg 205596
>emb|BX511098.5| Zebrafish DNA sequence from clone CH211-202L3 in linkage group 5, complete sequence Length = 72481 Score = 40.1 bits (20), Expect = 0.98 Identities = 20/20 (100%) Strand = Plus / Plus Query: 32 ttcttaataataatttacat 51 |||||||||||||||||||| Sbjct: 25089 ttcttaataataatttacat 25108
>gb|AC104511.5| Drosophila melanogaster X BAC RP98-39D14 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 166000 Score = 40.1 bits (20), Expect = 0.98 Identities = 20/20 (100%) Strand = Plus / Plus Query: 36 taataataatttacatacat 55 |||||||||||||||||||| Sbjct: 100924 taataataatttacatacat 100943
>emb|BX004760.10| Zebrafish DNA sequence from clone CH211-222O4 in linkage group 3, complete sequence Length = 190220 Score = 40.1 bits (20), Expect = 0.98 Identities = 20/20 (100%) Strand = Plus / Plus Query: 36 taataataatttacatacat 55 |||||||||||||||||||| Sbjct: 69241 taataataatttacatacat 69260
>gb|AC011763.6|AC011763 Drosophila melanogaster, chromosome 3R, region 90A-90A, BAC clone BACR48C05, complete sequence Length = 164450 Score = 40.1 bits (20), Expect = 0.98 Identities = 20/20 (100%) Strand = Plus / Minus Query: 47 tacatacatatgcacgctgg 66 |||||||||||||||||||| Sbjct: 141958 tacatacatatgcacgctgg 141939
>gb|AC155299.2| Mus musculus BAC clone RP24-229D17 from chromosome 15, complete sequence Length = 198559 Score = 40.1 bits (20), Expect = 0.98 Identities = 23/24 (95%) Strand = Plus / Plus Query: 35 ttaataataatttacatacatatg 58 ||||||||||| |||||||||||| Sbjct: 83579 ttaataataatatacatacatatg 83602
>emb|AL929213.5| Zebrafish DNA sequence from clone CH211-144A19, complete sequence Length = 169897 Score = 40.1 bits (20), Expect = 0.98 Identities = 20/20 (100%) Strand = Plus / Minus Query: 32 ttcttaataataatttacat 51 |||||||||||||||||||| Sbjct: 69809 ttcttaataataatttacat 69790
>emb|BX255893.5| Zebrafish DNA sequence from clone CH211-272H10 in linkage group 4, complete sequence Length = 99176 Score = 40.1 bits (20), Expect = 0.98 Identities = 20/20 (100%) Strand = Plus / Minus Query: 36 taataataatttacatacat 55 |||||||||||||||||||| Sbjct: 76094 taataataatttacatacat 76075
>gb|AE003717.2| Drosophila melanogaster chromosome 3R, section 55 of 118 of the complete sequence Length = 217725 Score = 40.1 bits (20), Expect = 0.98 Identities = 20/20 (100%) Strand = Plus / Minus Query: 47 tacatacatatgcacgctgg 66 |||||||||||||||||||| Sbjct: 123669 tacatacatatgcacgctgg 123650
>gb|AE003491.4| Drosophila melanogaster chromosome X, section 43 of 74 of the complete sequence Length = 332030 Score = 40.1 bits (20), Expect = 0.98 Identities = 20/20 (100%) Strand = Plus / Minus Query: 36 taataataatttacatacat 55 |||||||||||||||||||| Sbjct: 23638 taataataatttacatacat 23619
>gb|AC093196.2| Drosophila melanogaster clone BACR22H06, complete sequence Length = 173008 Score = 38.2 bits (19), Expect = 3.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 35 ttaataataatttacatacatat 57 ||||||| ||||||||||||||| Sbjct: 138839 ttaataaaaatttacatacatat 138817
>gb|AC009744.8| Drosophila melanogaster clone BACR06G16, complete sequence Length = 179038 Score = 38.2 bits (19), Expect = 3.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 35 ttaataataatttacatacatat 57 ||||||| ||||||||||||||| Sbjct: 31698 ttaataaaaatttacatacatat 31676
>gb|AY180151.1| Herpetomonas muscarum small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence Length = 773 Score = 38.2 bits (19), Expect = 3.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 47 tacatacatatgcacgctg 65 ||||||||||||||||||| Sbjct: 430 tacatacatatgcacgctg 412
>gb|AC185533.1| Drosophila melanogaster clone BACR48D21, complete sequence Length = 95808 Score = 38.2 bits (19), Expect = 3.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 38 ataataatttacatacatatgca 60 |||||||| |||||||||||||| Sbjct: 56117 ataataatatacatacatatgca 56095
>emb|AL954219.1| Pan troglodytes chromosome 22 clone PTB-302M06 map q21.2, complete sequence Length = 128963 Score = 38.2 bits (19), Expect = 3.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 28 tcccttcttaataataatt 46 ||||||||||||||||||| Sbjct: 47264 tcccttcttaataataatt 47282
>emb|AL390785.15| Human DNA sequence from clone RP11-325N9 on chromosome 10, complete sequence Length = 203169 Score = 38.2 bits (19), Expect = 3.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 37 aataataatttacatacat 55 ||||||||||||||||||| Sbjct: 49489 aataataatttacatacat 49507
>gb|AC160115.2| Mus musculus BAC clone RP23-473K23 from chromosome 13, complete sequence Length = 182345 Score = 38.2 bits (19), Expect = 3.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 35 ttaataataatttacatac 53 ||||||||||||||||||| Sbjct: 35132 ttaataataatttacatac 35114
>emb|CR846090.6| Zebrafish DNA sequence from clone DKEYP-78E10 in linkage group 14, complete sequence Length = 78515 Score = 38.2 bits (19), Expect = 3.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 36 taataataatttacataca 54 ||||||||||||||||||| Sbjct: 75886 taataataatttacataca 75868
>emb|CR932039.2| Medicago truncatula chromosome 5 clone mth2-6h11, COMPLETE SEQUENCE Length = 132508 Score = 38.2 bits (19), Expect = 3.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 3 aaatcgtcaattaattcga 21 ||||||||||||||||||| Sbjct: 78256 aaatcgtcaattaattcga 78238
>gb|AC089987.26| Homo sapiens 12q BAC RP11-722P11 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 164945 Score = 38.2 bits (19), Expect = 3.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 38 ataataatttacatacata 56 ||||||||||||||||||| Sbjct: 95473 ataataatttacatacata 95491
>ref|NM_176004.1| Drosophila melanogaster CG13125-RB, transcript variant B (CG13125), mRNA Length = 1335 Score = 38.2 bits (19), Expect = 3.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 35 ttaataataatttacatacatat 57 ||||||| ||||||||||||||| Sbjct: 1283 ttaataaaaatttacatacatat 1305
>ref|NM_135481.2| Drosophila melanogaster CG13125-RA, transcript variant A (CG13125), mRNA Length = 1758 Score = 38.2 bits (19), Expect = 3.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 35 ttaataataatttacatacatat 57 ||||||| ||||||||||||||| Sbjct: 1706 ttaataaaaatttacatacatat 1728
>gb|AE009926.1|AE009926 Pyrobaculum aerophilum strain IM2 section 181 of 201 of the complete genome Length = 10255 Score = 38.2 bits (19), Expect = 3.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 30 ccttcttaataataatttacata 52 ||||||||||||| ||||||||| Sbjct: 5538 ccttcttaataatgatttacata 5560
>dbj|AK038482.1| Mus musculus adult male hypothalamus cDNA, RIKEN full-length enriched library, clone:A230019I21 product:unclassifiable, full insert sequence Length = 2378 Score = 38.2 bits (19), Expect = 3.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 43 aatttacatacatatgcac 61 ||||||||||||||||||| Sbjct: 793 aatttacatacatatgcac 775
>gb|AE003626.4| Drosophila melanogaster chromosome 2L, section 35 of 83 of the complete sequence Length = 264919 Score = 38.2 bits (19), Expect = 3.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 35 ttaataataatttacatacatat 57 ||||||| ||||||||||||||| Sbjct: 213928 ttaataaaaatttacatacatat 213906
>gb|AE003573.4| Drosophila melanogaster chromosome X, section 74 of 74 of the complete sequence Length = 313035 Score = 38.2 bits (19), Expect = 3.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 38 ataataatttacatacatatgca 60 |||||||| |||||||||||||| Sbjct: 193281 ataataatatacatacatatgca 193259
>gb|AC125020.7| Mus musculus chromosome 12, clone RP24-181E5, complete sequence Length = 200586 Score = 38.2 bits (19), Expect = 3.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 43 aatttacatacatatgcac 61 ||||||||||||||||||| Sbjct: 80606 aatttacatacatatgcac 80588
>gb|AC005135.1|AC005135 Drosophila melanogaster DNA sequence (P1 DS07070 (D331)), complete sequence Length = 67297 Score = 38.2 bits (19), Expect = 3.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 35 ttaataataatttacatacatat 57 ||||||| ||||||||||||||| Sbjct: 64484 ttaataaaaatttacatacatat 64462
>gb|AC119202.6| Mus musculus chromosome 8, clone RP24-185N3, complete sequence Length = 159765 Score = 38.2 bits (19), Expect = 3.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 35 ttaataataatttacatac 53 ||||||||||||||||||| Sbjct: 74759 ttaataataatttacatac 74741
>emb|AL845332.11| Mouse DNA sequence from clone RP23-326D18 on chromosome 2, complete sequence Length = 200453 Score = 38.2 bits (19), Expect = 3.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 36 taataataatttacataca 54 ||||||||||||||||||| Sbjct: 136421 taataataatttacataca 136403
>emb|AL845170.5| Mouse DNA sequence from clone RP23-282A22 on chromosome 2, complete sequence Length = 183985 Score = 38.2 bits (19), Expect = 3.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 40 aataatttacatacatatg 58 ||||||||||||||||||| Sbjct: 150354 aataatttacatacatatg 150336 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,159,711 Number of Sequences: 3902068 Number of extensions: 1159711 Number of successful extensions: 87177 Number of sequences better than 10.0: 42 Number of HSP's better than 10.0 without gapping: 42 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 87040 Number of HSP's gapped (non-prelim): 136 length of query: 90 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 69 effective length of database: 17,151,101,840 effective search space: 1183426026960 effective search space used: 1183426026960 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)