ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart06e12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
17SBG2_SOYBN (Q8RVH5) Basic 7S globulin 2 precursor (Bg) (SBg7S) ... 53 4e-07
27SB1_SOYBN (P13917) Basic 7S globulin precursor (Bg) (SBg7S) [Co... 52 7e-07
3ASP3_CAEEL (P55956) Aspartic protease 3 precursor (EC 3.4.23.-) 32 0.76
4CATD_BOVIN (P80209) Cathepsin D precursor (EC 3.4.23.5) 30 2.9
5CATD_PIG (P00795) Cathepsin D precursor (EC 3.4.23.5) [Contains:... 30 3.8
6ASPR_HORVU (P42210) Phytepsin precursor (EC 3.4.23.40) (Aspartic... 30 3.8
7ELF4_MOUSE (Q9Z2U4) ETS-related transcription factor Elf-4 (E74-... 30 3.8
8RNH2_THIDA (Q3SKM7) Ribonuclease HII (EC 3.1.26.4) (RNase HII) 30 3.8
9FSH_DROME (P13709) Homeotic protein female sterile (Fragile-chor... 29 6.4
10OTX1_HUMAN (P32242) Homeobox protein OTX1 29 6.4
11CATD_CHICK (Q05744) Cathepsin D precursor (EC 3.4.23.5) [Contain... 29 6.4
12ASPR1_ORYSA (Q42456) Aspartic proteinase oryzasin-1 precursor (E... 29 6.4
13CATD_CLUHA (Q9DEX3) Cathepsin D precursor (EC 3.4.23.5) 29 6.4
14CATD_MOUSE (P18242) Cathepsin D precursor (EC 3.4.23.5) 29 6.4
15CATD_CANFA (Q4LAL9) Cathepsin D precursor (EC 3.4.23.5) 29 6.4
16Y1408_METKA (Q8TVI1) UPF0245 protein MK1408 28 8.4

>7SBG2_SOYBN (Q8RVH5) Basic 7S globulin 2 precursor (Bg) (SBg7S) [Contains:|
           Basic 7S globulin 2 high-kDa subunit; Basic 7S globulin
           2 low-kDa subunit]
          Length = 433

 Score = 52.8 bits (125), Expect = 4e-07
 Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 3/103 (2%)
 Frame = -3

Query: 357 FGLCYDAKTLGNNLGGYSVPNVVLALDGGGEWAMTGKNSMVDVKPGTACVAFVEMEAGDG 178
           FGLC+++    N +  Y   ++V+    G  W ++G++ MV  +PG  C+    M  G  
Sbjct: 331 FGLCFNS----NKINAYPSVDLVMDKPNGPVWRISGEDLMVQAQPGVTCLGV--MNGGMQ 384

Query: 177 GAPAVILGGAQMEDFVLDFDMEKKRLGFIRL---PHFTGCGNL 58
               V LG  Q+E+ ++ FD+ + R+GF       H   CG+L
Sbjct: 385 PRAEVTLGTRQLEEKLMVFDLARSRVGFSTSSLHSHGVKCGDL 427



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>7SB1_SOYBN (P13917) Basic 7S globulin precursor (Bg) (SBg7S) [Contains: Basic|
           7S globulin high-kDa subunit; Basic 7S globulin low-kDa
           subunit]
          Length = 427

 Score = 52.0 bits (123), Expect = 7e-07
 Identities = 33/116 (28%), Positives = 55/116 (47%)
 Frame = -3

Query: 441 VVDAFTKALAAQHANGXXXXXXXXXXXPFGLCYDAKTLGNNLGGYSVPNVVLALDGGGEW 262
           V  AFT+  A Q               PFGLC+++    N +  Y   ++V+    G  W
Sbjct: 301 VYQAFTQVFAQQLPK----QAQVKSVAPFGLCFNS----NKINAYPSVDLVMDKPNGPVW 352

Query: 261 AMTGKNSMVDVKPGTACVAFVEMEAGDGGAPAVILGGAQMEDFVLDFDMEKKRLGF 94
            ++G++ MV  +PG  C+    M  G      + LG  Q+E+ ++ FD+ + R+GF
Sbjct: 353 RISGEDLMVQAQPGVTCLGV--MNGGMQPRAEITLGARQLEENLVVFDLARSRVGF 406



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>ASP3_CAEEL (P55956) Aspartic protease 3 precursor (EC 3.4.23.-)|
          Length = 398

 Score = 32.0 bits (71), Expect = 0.76
 Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
 Frame = -3

Query: 306 SVPNVVLALDGGGEWAMTGKNSMVDVKPG----TACVAFVEMEAGDGGAPAVILGGAQME 139
           S+PN+   L GG  + + GK+ ++ +  G    T    F+ M+      P  ILG   + 
Sbjct: 318 SLPNITFNL-GGQNFDLQGKDYILQMSNGNGGSTCLSGFMGMDIPAPAGPLWILGDVFIG 376

Query: 138 DFVLDFDMEKKRLGF 94
            F   FD   KR+GF
Sbjct: 377 RFYSVFDHGNKRVGF 391



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>CATD_BOVIN (P80209) Cathepsin D precursor (EC 3.4.23.5)|
          Length = 390

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
 Frame = -3

Query: 306 SVPNVVLALDGGGEWAMTGKNSMVDVKPG--TACVA-FVEMEAGDGGAPAVILGGAQMED 136
           S+P V + L GG ++A++ ++  + V     T C++ F+ M+    G P  ILG   +  
Sbjct: 312 SLPEVTVKL-GGKDYALSPEDYALKVSQAETTVCLSGFMGMDIPPPGGPLWILGDVFIGR 370

Query: 135 FVLDFDMEKKRLG 97
           +   FD ++ R+G
Sbjct: 371 YYTVFDRDQNRVG 383



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>CATD_PIG (P00795) Cathepsin D precursor (EC 3.4.23.5) [Contains: Cathepsin D|
           light chain; Cathepsin D heavy chain]
          Length = 345

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
 Frame = -3

Query: 306 SVPNVVLALDGGGEWAMTGKNSMVDVKPG--TACVA-FVEMEAGDGGAPAVILGGAQMED 136
           S+P+V + L GG ++ ++ +N  + V     T C++ F+ M+    G P  ILG   +  
Sbjct: 269 SLPDVTVTL-GGKKYKLSSENYTLKVSQAGQTICLSGFMGMDIPPPGGPLWILGDVFIGR 327

Query: 135 FVLDFDMEKKRLG 97
           +   FD +  R+G
Sbjct: 328 YYTVFDRDLNRVG 340



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>ASPR_HORVU (P42210) Phytepsin precursor (EC 3.4.23.40) (Aspartic proteinase)|
           [Contains: Phytepsin 32 kDa subunit; Phytepsin 29 kDa
           subunit; Phytepsin 16 kDa subunit; Phytepsin 11 kDa
           subunit]
          Length = 508

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
 Frame = -3

Query: 306 SVPNVVLALDGGGEWAMTGKNSMVDVKPGTA--CVA-FVEMEAGDGGAPAVILGGAQMED 136
           S+P++   + GG ++A+  +  ++ V  G A  C++ F  M+      P  ILG   M  
Sbjct: 432 SMPDIEFTI-GGKKFALKPEEYILKVGEGAAAQCISGFTAMDIPPPRGPLWILGDVFMGP 490

Query: 135 FVLDFDMEKKRLGFIR 88
           +   FD  K R+GF +
Sbjct: 491 YHTVFDYGKLRIGFAK 506



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>ELF4_MOUSE (Q9Z2U4) ETS-related transcription factor Elf-4 (E74-like factor 4)|
           (Myeloid Elf-1-like factor)
          Length = 655

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = +2

Query: 164 TAGAPPSPASISTNATHAVPGLTSTIEFFPVIAHXXXXXXASTTLGTEYPPRLLPSV 334
           T  + P+P++I        PG T T++  P+         ASTT  T+   + +P+V
Sbjct: 393 TVSSSPAPSNIHLGVAPVGPGSTVTLQTIPLTTVLTNGPPASTTAPTQLVLQSVPAV 449



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>RNH2_THIDA (Q3SKM7) Ribonuclease HII (EC 3.1.26.4) (RNase HII)|
          Length = 204

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = -1

Query: 311 GTRCPTWCWRSTAGVNG 261
           G RCP W WRS A V G
Sbjct: 113 GDRCPEWTWRSQAVVQG 129



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>FSH_DROME (P13709) Homeotic protein female sterile (Fragile-chorion membrane|
           protein)
          Length = 2038

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 14/25 (56%), Positives = 15/25 (60%)
 Frame = +2

Query: 164 TAGAPPSPASISTNATHAVPGLTST 238
           TAG  PS   IST   H VPG T+T
Sbjct: 249 TAGGAPSIPPISTMPPHTVPGSTNT 273



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>OTX1_HUMAN (P32242) Homeobox protein OTX1|
          Length = 354

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = +2

Query: 95  NPXXXXXXXXXXXXXXIWAPPRITAGAPPSPASISTNATHAVPGLTSTIE 244
           NP              IW+P  I+ G+  +PAS+S     A P  TS ++
Sbjct: 160 NPVAAASSLSTPAASSIWSPASISPGS--APASVSVPEPLAAPSNTSCMQ 207



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>CATD_CHICK (Q05744) Cathepsin D precursor (EC 3.4.23.5) [Contains: Cathepsin D|
           light chain; Cathepsin D heavy chain]
          Length = 398

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
 Frame = -3

Query: 306 SVPNVVLALDGGGEWAMTGKNSM--VDVKPGTACVA-FVEMEAGDGGAPAVILGGAQMED 136
           S+P V L L GG  + +TG+  +  V  +  T C++ F  ++    G P  ILG   +  
Sbjct: 322 SLPVVTLML-GGKPYQLTGEQYVFKVSAQGETICLSGFSGLDVPPPGGPLWILGDVFIGP 380

Query: 135 FVLDFDMEKKRLGFIR 88
           +   FD +   +GF +
Sbjct: 381 YYTVFDRDNDSVGFAK 396



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>ASPR1_ORYSA (Q42456) Aspartic proteinase oryzasin-1 precursor (EC 3.4.23.-)|
          Length = 509

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
 Frame = -3

Query: 306 SVPNVVLALDGGGEWAMTGKNSMVDVKPGTA--CVA-FVEMEAGDGGAPAVILGGAQMED 136
           S+P +   + GG ++A+  +  ++ V  G A  C++ F  M+      P  ILG   M  
Sbjct: 433 SMPEISFTI-GGKKFALKPEEYILKVGEGAAAQCISGFTAMDIPPPRGPLWILGDVFMGA 491

Query: 135 FVLDFDMEKKRLGFIR 88
           +   FD  K R+GF +
Sbjct: 492 YHTVFDYGKMRVGFAK 507



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>CATD_CLUHA (Q9DEX3) Cathepsin D precursor (EC 3.4.23.5)|
          Length = 396

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
 Frame = -3

Query: 276 GGGEWAMTGKNSMVDVKPG--TACVA-FVEMEAGDGGAPAVILGGAQMEDFVLDFDMEKK 106
           GG  +++TG+  ++    G  T C++  + +E      P  ILG   +  +   FD E  
Sbjct: 329 GGKTYSLTGEQYVLKESQGGKTICLSGLMGLEIPPPAGPLWILGDVFIGQYYTVFDRESN 388

Query: 105 RLGFIR 88
           R+GF +
Sbjct: 389 RVGFAK 394



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>CATD_MOUSE (P18242) Cathepsin D precursor (EC 3.4.23.5)|
          Length = 410

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
 Frame = -3

Query: 306 SVPNVVLALDGGGEWAMTGKNSMVDVKPG--TACVA-FVEMEAGDGGAPAVILGGAQMED 136
           S+P V L L GG  + +     ++ V  G  T C++ F+ M+      P  ILG   +  
Sbjct: 332 SLPTVYLKL-GGKNYELHPDKYILKVSQGGKTICLSGFMGMDIPPPSGPLWILGDVFIGS 390

Query: 135 FVLDFDMEKKRLGF 94
           +   FD +  R+GF
Sbjct: 391 YYTVFDRDNNRVGF 404



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>CATD_CANFA (Q4LAL9) Cathepsin D precursor (EC 3.4.23.5)|
          Length = 410

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
 Frame = -3

Query: 306 SVPNVVLALDGGGEWAMTGKNSMVDVKPG--TACVA-FVEMEAGDGGAPAVILGGAQMED 136
           ++P+V L L GG  + ++ ++  + V  G  T C++ F+ M+    G P  ILG   +  
Sbjct: 332 TLPDVTLKL-GGKLYKLSSEDYTLKVSQGGKTICLSGFMGMDIPPPGGPLWILGDVFIGC 390

Query: 135 FVLDFDMEKKRLG 97
           +   FD ++ R+G
Sbjct: 391 YYTVFDRDQNRVG 403



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>Y1408_METKA (Q8TVI1) UPF0245 protein MK1408|
          Length = 402

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -3

Query: 243 SMVDVKPGTACVAFVEMEAGDG 178
           S+VD+KPG   +A+VE E G G
Sbjct: 367 SVVDLKPGDKVLAYVETEEGKG 388


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,907,931
Number of Sequences: 219361
Number of extensions: 871568
Number of successful extensions: 3430
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 3292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3429
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2851757076
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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