ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart06e10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|X56782.1|TA1B38 T.aestivum 1b-c38 gene for HBP-1b (leucine z... 337 2e-89
2dbj|AK073601.1| Oryza sativa (japonica cultivar-group) cDNA clon... 192 6e-46
3dbj|AB037151.1| Oryza sativa (japonica cultivar-group) OsRPN10 m... 192 6e-46
4dbj|AB010740.1| Oryza sativa (japonica cultivar-group) mRNA for ... 192 6e-46
5gb|BT018579.1| Zea mays clone EL01N0445E02.d mRNA sequence 151 2e-33
6gb|AY103564.1| Zea mays PCO151364 mRNA sequence 143 5e-31
7gb|BT017153.1| Zea mays clone EL01N0367E07.c mRNA sequence 119 8e-24
8gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 113 5e-22
9dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 113 5e-22
10gb|AC134239.2| Oryza sativa (japonica cultivar-group) chromosome... 113 5e-22
11gb|AC148217.15| Medicago truncatula clone mth2-20c19, complete s... 56 1e-04
12gb|AC121233.16| Medicago truncatula clone mth2-14g13, complete s... 56 1e-04
13emb|AL731688.14| Mouse DNA sequence from clone RP23-291K6 on chr... 42 1.4
14gb|AC109157.10| Mus musculus chromosome 7, clone RP24-169M16, co... 40 5.7
15gb|AC113510.9| Mus musculus chromosome 5, clone RP23-378O9, comp... 40 5.7
16ref|XM_951660.1| Neurospora crassa OR74A hypothetical protein (N... 40 5.7
17ref|XM_327914.1| Neurospora crassa OR74A hypothetical protein (N... 40 5.7
18gb|AC148324.2| Mus musculus BAC clone RP24-454N4 from chromosome... 40 5.7
19gb|AC121302.7| Mus musculus chromosome 13, clone RP23-163B12, co... 40 5.7
20gb|AC131762.2| Mus musculus BAC clone RP24-228J18 from chromosom... 40 5.7
21gb|AC122489.3| Mus musculus BAC clone RP24-386H10 from chromosom... 40 5.7
22gb|AC160553.7| Mus musculus chromosome 7, clone RP23-334C12, com... 40 5.7
23emb|AL163206.2|HS21C006 Homo sapiens chromosome 21 segment HS21C006 40 5.7
24gb|AC161582.4| Monodelphis domestica, clone XX-27C10, complete s... 40 5.7
25emb|AL591845.27| Human DNA sequence from clone RP11-268J15 on ch... 40 5.7
26emb|AL138711.13| Human DNA sequence from clone RP11-495J3 on chr... 40 5.7
27emb|AL031675.4|HS751L1 Human DNA sequence from clone RP4-751L1 o... 40 5.7
28emb|CR339060.11| Zebrafish DNA sequence from clone DKEY-276H21 i... 40 5.7
29emb|BX842620.1| Neurospora crassa DNA linkage group V BAC contig... 40 5.7
30gb|AC016229.10| Homo sapiens chromosome 18, clone RP11-27G24, co... 40 5.7
31dbj|AK148842.1| Mus musculus 2 days neonate sympathetic ganglion... 40 5.7
32gb|AC104195.10| Mus musculus chromosome 5, clone RP24-95O4, comp... 40 5.7
33gb|AC008944.7| Homo sapiens chromosome 5 clone CTD-2323D3, compl... 40 5.7
34gb|AC026387.7|AC026387 Mus musculus 11 BAC RP23-476H9 (Roswell P... 40 5.7
35gb|AF130358.2|AF130358 Homo sapiens chromosome 21q11.2 PAC 90B5,... 40 5.7
36dbj|BS000009.1| Pan troglodytes chromosome 22 clone:PTB-118J15, ... 40 5.7
37emb|AL844200.3| Human DNA sequence from clone RP11-552P19 on chr... 40 5.7
38gb|AF130249.1|AF130249 Homo sapiens PAC 126N20 derived from chro... 40 5.7
39emb|AL163952.5|CNS05TBP Human chromosome 14 DNA sequence BAC R-1... 40 5.7
40gb|AC147218.4| Mus musculus BAC clone RP23-11I13 from 12, comple... 40 5.7
41emb|CT009764.9| Mouse DNA sequence from clone RP23-173E21 on chr... 40 5.7 
>emb|X56782.1|TA1B38 T.aestivum 1b-c38 gene for HBP-1b (leucine zipper type transcription
            factor)
          Length = 2204

 Score =  337 bits (170), Expect = 2e-89
 Identities = 208/220 (94%), Gaps = 3/220 (1%)
 Strand = Plus / Minus

                                                                        
Query: 206  agttcttcccatcttcaggcttgtctgtcttgtccgcctcatctttcttctcct---gct 262
            ||||||||||||||||||   |||||| ||||||| ||| ||||||||||||||   |||
Sbjct: 1949 agttcttcccatcttcagaaatgtctggcttgtcctccttatctttcttctcctcctgct 1890

                                                                        
Query: 263  ctccttggccatgcaaagatgccagtagatctttcacagatgggtcattggggtcaacac 322
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1889 ctccttggccatgcaaagatgccagtagatctttcacagatgggtcattggggtcaacac 1830

                                                                        
Query: 323  caggaagcgaattaaggatggatgtcacaaatgatctgtcttcaaacactttgctcatat 382
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1829 caggaagcgaattaaggatggatgtcacaaatgatctgtcttcaaacactttgctcatat 1770

                                                    
Query: 383  cagattgaccagacgcctctgcgtcctgaacagacatttg 422
            |||||||||||| |||||| |||||||| |||||||||||
Sbjct: 1769 cagattgaccagccgcctcagcgtcctggacagacatttg 1730



 Score =  198 bits (100), Expect = 1e-47
 Identities = 154/171 (90%), Gaps = 7/171 (4%)
 Strand = Plus / Minus

                                                                        
Query: 7    aatttgcaacatgtaatcacttaagacaaacatggaggagcgttcgtgagagcagacata 66
            |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct: 2158 aatttgcaacatgtaatcacttaagacaaacatgaaggagcattcgtgagagcagacata 2099

                                                                        
Query: 67   atacaaattctcttggcatttgagttatcgtcaacgcagttaccagaggatcaagtaaat 126
            |||||| |||||| |||     ||||||| ||||||||||||| ||||||| ||||||||
Sbjct: 2098 atacaagttctctcggc-----agttatcatcaacgcagttacaagaggattaagtaaat 2044

                                                               
Query: 127  tcat--agcccaagtgtaaaagcagctaaggcaggcaatcttcttcccttc 175
            ||||  ||||| ||||||||||||||||| |||||||||||||||| ||||
Sbjct: 2043 tcatagagcccgagtgtaaaagcagctaatgcaggcaatcttcttcacttc 1993
to top
>dbj|AK073601.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046D23, full
            insert sequence
          Length = 1899

 Score =  192 bits (97), Expect = 6e-46
 Identities = 154/173 (89%)
 Strand = Plus / Minus

                                                                        
Query: 250  ttcttctcctgctctccttggccatgcaaagatgccagtagatctttcacagatgggtca 309
            |||||||| ||||| || || |||||||| |||||||| | |||||||||||| ||||||
Sbjct: 1240 ttcttctcttgctcgccctgcccatgcaatgatgccagcaaatctttcacagaggggtca 1181

                                                                        
Query: 310  ttggggtcaacaccaggaagcgaattaaggatggatgtcacaaatgatctgtcttcaaac 369
            ||||||||||||||||| || || |||||||||||||| |||||||||||||||||||||
Sbjct: 1180 ttggggtcaacaccagggagagagttaaggatggatgtaacaaatgatctgtcttcaaac 1121

                                                                 
Query: 370  actttgctcatatcagattgaccagacgcctctgcgtcctgaacagacatttg 422
            || |||||||||||||| |||| |||| |  |||||||||| |||||||||||
Sbjct: 1120 accttgctcatatcagactgactagacccgcctgcgtcctggacagacatttg 1068
to top
>dbj|AB037151.1| Oryza sativa (japonica cultivar-group) OsRPN10 mRNA for 26S
            proteasome regulatory particle non-ATPase subunit10,
            complete cds
          Length = 1536

 Score =  192 bits (97), Expect = 6e-46
 Identities = 154/173 (89%)
 Strand = Plus / Minus

                                                                        
Query: 250  ttcttctcctgctctccttggccatgcaaagatgccagtagatctttcacagatgggtca 309
            |||||||| ||||| || || |||||||| |||||||| | |||||||||||| ||||||
Sbjct: 1239 ttcttctcttgctcgccctgcccatgcaatgatgccagcaaatctttcacagaggggtca 1180

                                                                        
Query: 310  ttggggtcaacaccaggaagcgaattaaggatggatgtcacaaatgatctgtcttcaaac 369
            ||||||||||||||||| || || |||||||||||||| |||||||||||||||||||||
Sbjct: 1179 ttggggtcaacaccagggagagagttaaggatggatgtaacaaatgatctgtcttcaaac 1120

                                                                 
Query: 370  actttgctcatatcagattgaccagacgcctctgcgtcctgaacagacatttg 422
            || |||||||||||||| |||| |||| |  |||||||||| |||||||||||
Sbjct: 1119 accttgctcatatcagactgactagacccgcctgcgtcctggacagacatttg 1067
to top
>dbj|AB010740.1| Oryza sativa (japonica cultivar-group) mRNA for OsS5a, complete cds
          Length = 1508

 Score =  192 bits (97), Expect = 6e-46
 Identities = 154/173 (89%)
 Strand = Plus / Minus

                                                                        
Query: 250  ttcttctcctgctctccttggccatgcaaagatgccagtagatctttcacagatgggtca 309
            |||||||| ||||| || || |||||||| |||||||| | |||||||||||| ||||||
Sbjct: 1239 ttcttctcttgctcgccctgcccatgcaatgatgccagcaaatctttcacagaggggtca 1180

                                                                        
Query: 310  ttggggtcaacaccaggaagcgaattaaggatggatgtcacaaatgatctgtcttcaaac 369
            ||||||||||||||||| || || |||||||||||||| |||||||||||||||||||||
Sbjct: 1179 ttggggtcaacaccagggagagagttaaggatggatgtaacaaatgatctgtcttcaaac 1120

                                                                 
Query: 370  actttgctcatatcagattgaccagacgcctctgcgtcctgaacagacatttg 422
            || |||||||||||||| |||| |||| |  |||||||||| |||||||||||
Sbjct: 1119 accttgctcatatcagactgactagacccgcctgcgtcctggacagacatttg 1067
to top
>gb|BT018579.1| Zea mays clone EL01N0445E02.d mRNA sequence
          Length = 1650

 Score =  151 bits (76), Expect = 2e-33
 Identities = 121/136 (88%)
 Strand = Plus / Minus

                                                                        
Query: 250  ttcttctcctgctctccttggccatgcaaagatgccagtagatctttcacagatgggtca 309
            |||||||| |||||||| ||||  ||||| |||||||| | |||||| |||||||| |||
Sbjct: 1268 ttcttctcttgctctccctggctgtgcaatgatgccagcaaatctttaacagatggatca 1209

                                                                        
Query: 310  ttggggtcaacaccaggaagcgaattaaggatggatgtcacaaatgatctgtcttcaaac 369
            ||||| |||||||||||||||||||||||||| |||| |||||||| |||||||||||||
Sbjct: 1208 ttgggatcaacaccaggaagcgaattaaggatagatgacacaaatgttctgtcttcaaac 1149

                            
Query: 370  actttgctcatatcag 385
            || || ||||||||||
Sbjct: 1148 accttactcatatcag 1133
to top
>gb|AY103564.1| Zea mays PCO151364 mRNA sequence
          Length = 1318

 Score =  143 bits (72), Expect = 5e-31
 Identities = 120/136 (88%)
 Strand = Plus / Minus

                                                                        
Query: 250  ttcttctcctgctctccttggccatgcaaagatgccagtagatctttcacagatgggtca 309
            |||||||| |||||||| ||||  ||||| |||||||| | |||||| |||||||| |||
Sbjct: 1274 ttcttctcttgctctccctggctgtgcaatgatgccagcaaatctttaacagatggatca 1215

                                                                        
Query: 310  ttggggtcaacaccaggaagcgaattaaggatggatgtcacaaatgatctgtcttcaaac 369
            ||||| |||||||||||||||||||||||||| |||| |||||| | |||||||||||||
Sbjct: 1214 ttgggatcaacaccaggaagcgaattaaggatagatgacacaaacgttctgtcttcaaac 1155

                            
Query: 370  actttgctcatatcag 385
            || || ||||||||||
Sbjct: 1154 accttactcatatcag 1139
to top
>gb|BT017153.1| Zea mays clone EL01N0367E07.c mRNA sequence
          Length = 1189

 Score =  119 bits (60), Expect = 8e-24
 Identities = 117/136 (86%)
 Strand = Plus / Minus

                                                                       
Query: 250 ttcttctcctgctctccttggccatgcaaagatgccagtagatctttcacagatgggtca 309
           |||||||| | |||||| ||||  ||||| |||||||  | |||||| | |||||| |||
Sbjct: 999 ttcttctcttcctctccctggctgtgcaatgatgccaacaaatctttaatagatggatca 940

                                                                       
Query: 310 ttggggtcaacaccaggaagcgaattaaggatggatgtcacaaatgatctgtcttcaaac 369
           ||||| |||||||||||||||||||||||||| |||| |||||| | |||||||||||||
Sbjct: 939 ttgggatcaacaccaggaagcgaattaaggatagatgacacaaacgttctgtcttcaaac 880

                           
Query: 370 actttgctcatatcag 385
           || || ||||||||||
Sbjct: 879 accttactcatatcag 864
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  113 bits (57), Expect = 5e-22
 Identities = 81/89 (91%)
 Strand = Plus / Plus

                                                                           
Query: 334     ttaaggatggatgtcacaaatgatctgtcttcaaacactttgctcatatcagattgacca 393
               |||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||| |
Sbjct: 7550462 ttaaggatggatgtaacaaatgatctgtcttcaaacaccttgctcatatcagactgacta 7550521

                                            
Query: 394     gacgcctctgcgtcctgaacagacatttg 422
               ||| |  |||||||||| |||||||||||
Sbjct: 7550522 gacccgcctgcgtcctggacagacatttg 7550550



 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 52/56 (92%)
 Strand = Plus / Plus

                                                                       
Query: 271     ccatgcaaagatgccagtagatctttcacagatgggtcattggggtcaacaccagg 326
               |||||||| |||||||| | |||||||||||| |||||||||||||||||||||||
Sbjct: 7550306 ccatgcaatgatgccagcaaatctttcacagaggggtcattggggtcaacaccagg 7550361
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  113 bits (57), Expect = 5e-22
 Identities = 81/89 (91%)
 Strand = Plus / Plus

                                                                           
Query: 334     ttaaggatggatgtcacaaatgatctgtcttcaaacactttgctcatatcagattgacca 393
               |||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||| |
Sbjct: 7548297 ttaaggatggatgtaacaaatgatctgtcttcaaacaccttgctcatatcagactgacta 7548356

                                            
Query: 394     gacgcctctgcgtcctgaacagacatttg 422
               ||| |  |||||||||| |||||||||||
Sbjct: 7548357 gacccgcctgcgtcctggacagacatttg 7548385



 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 52/56 (92%)
 Strand = Plus / Plus

                                                                       
Query: 271     ccatgcaaagatgccagtagatctttcacagatgggtcattggggtcaacaccagg 326
               |||||||| |||||||| | |||||||||||| |||||||||||||||||||||||
Sbjct: 7548141 ccatgcaatgatgccagcaaatctttcacagaggggtcattggggtcaacaccagg 7548196
to top
>gb|AC134239.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBb0042A11, complete sequence
          Length = 113049

 Score =  113 bits (57), Expect = 5e-22
 Identities = 81/89 (91%)
 Strand = Plus / Plus

                                                                         
Query: 334   ttaaggatggatgtcacaaatgatctgtcttcaaacactttgctcatatcagattgacca 393
             |||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||| |
Sbjct: 79358 ttaaggatggatgtaacaaatgatctgtcttcaaacaccttgctcatatcagactgacta 79417

                                          
Query: 394   gacgcctctgcgtcctgaacagacatttg 422
             ||| |  |||||||||| |||||||||||
Sbjct: 79418 gacccgcctgcgtcctggacagacatttg 79446



 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 52/56 (92%)
 Strand = Plus / Plus

                                                                     
Query: 271   ccatgcaaagatgccagtagatctttcacagatgggtcattggggtcaacaccagg 326
             |||||||| |||||||| | |||||||||||| |||||||||||||||||||||||
Sbjct: 79202 ccatgcaatgatgccagcaaatctttcacagaggggtcattggggtcaacaccagg 79257
to top
>gb|AC148217.15| Medicago truncatula clone mth2-20c19, complete sequence
          Length = 113210

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                     
Query: 291   atctttcacagatgggtcattggggtcaacaccaggaagc 330
             |||||| |||||||||||||| |||||||| |||||||||
Sbjct: 89777 atctttgacagatgggtcatttgggtcaaccccaggaagc 89816
to top
>gb|AC121233.16| Medicago truncatula clone mth2-14g13, complete sequence
          Length = 129617

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                     
Query: 291   atctttcacagatgggtcattggggtcaacaccaggaagc 330
             |||||| |||||||||||||| |||||||| |||||||||
Sbjct: 22550 atctttgacagatgggtcatttgggtcaaccccaggaagc 22589
to top
>emb|AL731688.14| Mouse DNA sequence from clone RP23-291K6 on chromosome 11 Contains the
             3' end of the Slit3 gene for slit homolog 3 (Drosophila),
             complete sequence
          Length = 113164

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 357   tctgtcttcaaacactttgct 377
             |||||||||||||||||||||
Sbjct: 38005 tctgtcttcaaacactttgct 37985
to top
>gb|AC109157.10| Mus musculus chromosome 7, clone RP24-169M16, complete sequence
          Length = 164968

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 241   gcctcatctttcttctcctgctct 264
             ||||||||||||||||| ||||||
Sbjct: 73148 gcctcatctttcttctcttgctct 73171
to top
>gb|AC113510.9| Mus musculus chromosome 5, clone RP23-378O9, complete sequence
          Length = 171806

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 72     aattctcttggcatttgagt 91
              ||||||||||||||||||||
Sbjct: 152430 aattctcttggcatttgagt 152449
to top
>ref|XM_951660.1| Neurospora crassa OR74A hypothetical protein (NCU01476.1) partial
            mRNA
          Length = 2436

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 243  ctcatctttcttctcctgct 262
            ||||||||||||||||||||
Sbjct: 1953 ctcatctttcttctcctgct 1934
to top
>ref|XM_327914.1| Neurospora crassa OR74A hypothetical protein (NCU01476.1) partial
            mRNA
          Length = 2436

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 243  ctcatctttcttctcctgct 262
            ||||||||||||||||||||
Sbjct: 1953 ctcatctttcttctcctgct 1934
to top
>gb|AC148324.2| Mus musculus BAC clone RP24-454N4 from chromosome 12, complete
            sequence
          Length = 183478

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 249  tttcttctcctgctctcctt 268
            ||||||||||||||||||||
Sbjct: 5823 tttcttctcctgctctcctt 5804
to top
>gb|AC121302.7| Mus musculus chromosome 13, clone RP23-163B12, complete sequence
          Length = 190256

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 179    atgtgcatgaagcaacaaag 198
              ||||||||||||||||||||
Sbjct: 153866 atgtgcatgaagcaacaaag 153847
to top
>gb|AC131762.2| Mus musculus BAC clone RP24-228J18 from chromosome 12, complete
             sequence
          Length = 157435

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 67    atacaaattctcttggcatt 86
             ||||||||||||||||||||
Sbjct: 65440 atacaaattctcttggcatt 65459
to top
>gb|AC122489.3| Mus musculus BAC clone RP24-386H10 from chromosome 13, complete sequence
          Length = 191710

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 179    atgtgcatgaagcaacaaag 198
              ||||||||||||||||||||
Sbjct: 184453 atgtgcatgaagcaacaaag 184434
to top
>gb|AC160553.7| Mus musculus chromosome 7, clone RP23-334C12, complete sequence
          Length = 191999

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 241 gcctcatctttcttctcctgctct 264
           ||||||||||||||||| ||||||
Sbjct: 946 gcctcatctttcttctcttgctct 969
to top
>emb|AL163206.2|HS21C006 Homo sapiens chromosome 21 segment HS21C006
          Length = 340000

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 15    acatgtaatcacttaagaca 34
             ||||||||||||||||||||
Sbjct: 46801 acatgtaatcacttaagaca 46820
to top
>gb|AC161582.4| Monodelphis domestica, clone XX-27C10, complete sequence
          Length = 139570

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 212   tcccatcttcaggcttgtct 231
             ||||||||||||||||||||
Sbjct: 14078 tcccatcttcaggcttgtct 14059
to top
>emb|AL591845.27| Human DNA sequence from clone RP11-268J15 on chromosome 1 Contains the
             3' end of a novel gene for thyroid hormone
             receptor-associated protein, 150 kDa subunit (TRAP150)
             (FLJ22082), a novel transcript (FLJ22938), a gene for a
             novel protein (FLJ10647), the 3' end of a gene for
             Ser/Thr-like kinase (MGC4796) and two CpG islands,
             complete sequence
          Length = 104307

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 390   accagacgcctctgcgtcct 409
             ||||||||||||||||||||
Sbjct: 43720 accagacgcctctgcgtcct 43739
to top
>emb|AL138711.13| Human DNA sequence from clone RP11-495J3 on chromosome 13q12.3-14.11
             Contains a ribosomal protein S12 (RPS12) pseudogene and a
             CpG island, complete sequence
          Length = 182178

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 245   catctttcttctcctgctctcctt 268
             ||||| ||||||||||||||||||
Sbjct: 66952 catctgtcttctcctgctctcctt 66975
to top
>emb|AL031675.4|HS751L1 Human DNA sequence from clone RP4-751L1 on chromosome 20p11.2-12.1
             Contains part of the PCSK2 gene for proprotein convertase
             subtilisin/kexin type 2, complete sequence
          Length = 89521

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 353   atgatctgtcttcaaacact 372
             ||||||||||||||||||||
Sbjct: 70256 atgatctgtcttcaaacact 70237
to top
>emb|CR339060.11| Zebrafish DNA sequence from clone DKEY-276H21 in linkage group 23,
             complete sequence
          Length = 80855

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 178   catgtgcatgaagcaacaaa 197
             ||||||||||||||||||||
Sbjct: 19449 catgtgcatgaagcaacaaa 19468
to top
>emb|BX842620.1| Neurospora crassa DNA linkage group V BAC contig B11E5
          Length = 191196

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 243   ctcatctttcttctcctgct 262
             ||||||||||||||||||||
Sbjct: 52774 ctcatctttcttctcctgct 52793
to top
>gb|AC016229.10| Homo sapiens chromosome 18, clone RP11-27G24, complete sequence
          Length = 149787

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 16    catgtaatcacttaagacaa 35
             ||||||||||||||||||||
Sbjct: 86512 catgtaatcacttaagacaa 86493
to top
>dbj|AK148842.1| Mus musculus 2 days neonate sympathetic ganglion cDNA, RIKEN
            full-length enriched library, clone:7120454A02
            product:unclassifiable, full insert sequence
          Length = 2290

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 72   aattctcttggcatttgagt 91
            ||||||||||||||||||||
Sbjct: 1683 aattctcttggcatttgagt 1702
to top
>gb|AC104195.10| Mus musculus chromosome 5, clone RP24-95O4, complete sequence
          Length = 214251

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 72    aattctcttggcatttgagt 91
             ||||||||||||||||||||
Sbjct: 58044 aattctcttggcatttgagt 58063
to top
>gb|AC008944.7| Homo sapiens chromosome 5 clone CTD-2323D3, complete sequence
          Length = 109760

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 17    atgtaatcacttaagacaaacatg 40
             ||||||||||||||| ||||||||
Sbjct: 87070 atgtaatcacttaagccaaacatg 87093
to top
>gb|AC026387.7|AC026387 Mus musculus 11 BAC RP23-476H9 (Roswell Park Cancer Institute Mouse BAC
             Library) complete sequence
          Length = 204318

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 249   tttcttctcctgctctcctt 268
             ||||||||||||||||||||
Sbjct: 94315 tttcttctcctgctctcctt 94334
to top
>gb|AF130358.2|AF130358 Homo sapiens chromosome 21q11.2 PAC 90B5, complete sequence
          Length = 197778

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 15     acatgtaatcacttaagaca 34
              ||||||||||||||||||||
Sbjct: 170849 acatgtaatcacttaagaca 170868
to top
>dbj|BS000009.1| Pan troglodytes chromosome 22 clone:PTB-118J15, map 22, complete
             sequences
          Length = 199914

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 15    acatgtaatcacttaagaca 34
             ||||||||||||||||||||
Sbjct: 51602 acatgtaatcacttaagaca 51621
to top
>emb|AL844200.3| Human DNA sequence from clone RP11-552P19 on chromosome 1, complete
              sequence
          Length = 175707

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 17     atgtaatcacttaagacaaacatg 40
              ||||||||||||||| ||||||||
Sbjct: 164634 atgtaatcacttaagccaaacatg 164657
to top
>gb|AF130249.1|AF130249 Homo sapiens PAC 126N20 derived from chromosome 21p11.2, complete
             sequence, containing STCH and an unknown gene
          Length = 97083

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 15    acatgtaatcacttaagaca 34
             ||||||||||||||||||||
Sbjct: 25658 acatgtaatcacttaagaca 25677
to top
>emb|AL163952.5|CNS05TBP Human chromosome 14 DNA sequence BAC R-1012E15 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 196514

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 245    catctttcttctcctgctct 264
              ||||||||||||||||||||
Sbjct: 132700 catctttcttctcctgctct 132719
to top
>gb|AC147218.4| Mus musculus BAC clone RP23-11I13 from 12, complete sequence
          Length = 217668

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 249   tttcttctcctgctctcctt 268
             ||||||||||||||||||||
Sbjct: 62937 tttcttctcctgctctcctt 62956
to top
>emb|CT009764.9| Mouse DNA sequence from clone RP23-173E21 on chromosome 12, complete
            sequence
          Length = 214925

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 67   atacaaattctcttggcatt 86
            ||||||||||||||||||||
Sbjct: 4519 atacaaattctcttggcatt 4500


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,296,847
Number of Sequences: 3902068
Number of extensions: 4296847
Number of successful extensions: 87391
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 87277
Number of HSP's gapped (non-prelim): 111
length of query: 422
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 400
effective length of database: 17,147,199,772
effective search space: 6858879908800
effective search space used: 6858879908800
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top