ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart06e09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PGFRA_MOUSE (P26618) Alpha platelet-derived growth factor recept... 31 1.4
2PGFRA_HUMAN (P16234) Alpha platelet-derived growth factor recept... 31 1.4
3PGFRA_RAT (P20786) Alpha platelet-derived growth factor receptor... 31 1.4
4O10A3_HUMAN (P58181) Olfactory receptor 10A3 (HTPCRX12) 30 3.1
5HYPA_CLOPE (Q46205) Protein hypA 29 5.2

>PGFRA_MOUSE (P26618) Alpha platelet-derived growth factor receptor precursor (EC|
            2.7.10.1) (PDGF-R-alpha)
          Length = 1089

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = +3

Query: 114  PLPSVNPIPES*TMGKQHQHKSE 182
            PLP ++P+PE   +GK+++H S+
Sbjct: 1021 PLPDIDPVPEEEDLGKRNRHSSQ 1043



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>PGFRA_HUMAN (P16234) Alpha platelet-derived growth factor receptor precursor (EC|
            2.7.10.1) (PDGF-R-alpha) (CD140a antigen)
          Length = 1089

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = +3

Query: 114  PLPSVNPIPES*TMGKQHQHKSE 182
            PLP ++P+PE   +GK+++H S+
Sbjct: 1021 PLPDIDPVPEEEDLGKRNRHSSQ 1043



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>PGFRA_RAT (P20786) Alpha platelet-derived growth factor receptor precursor (EC|
            2.7.10.1) (PDGF-R-alpha)
          Length = 1088

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = +3

Query: 114  PLPSVNPIPES*TMGKQHQHKSE 182
            PLP ++P+PE   +GK+++H S+
Sbjct: 1020 PLPDIDPVPEEEDLGKRNRHSSQ 1042



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>O10A3_HUMAN (P58181) Olfactory receptor 10A3 (HTPCRX12)|
          Length = 314

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = +1

Query: 4   SHTTSILLVSSLYETINVPYTLPQF*YSPPLSQTMAIPFHP*TQYLNP 147
           SH TS+ L    Y T N+ Y  P+  YSP   + +++ +   T  LNP
Sbjct: 243 SHLTSVTL---FYGTANMTYLQPKSGYSPETKKLISLAYTLLTPLLNP 287



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>HYPA_CLOPE (Q46205) Protein hypA|
          Length = 973

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
 Frame = -1

Query: 203 FNISGSEFRFVLVLLAHCSGFRYWVYGWKGIAIVCDKGGLYQNCGRVYGTLIVSYRD-DT 27
           +   G ++   L LL    GF Y    W  + +     G++ N  R  G  IVSYRD + 
Sbjct: 801 YKTHGYKYSGALSLLESILGFDYL---WNAVRVKGGAYGVFSNFRRDGGAYIVSYRDPNI 857

Query: 26  SSILVVWD 3
            S L  +D
Sbjct: 858 KSTLEAYD 865


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,100,572
Number of Sequences: 219361
Number of extensions: 1297597
Number of successful extensions: 3051
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2998
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3049
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3014947676
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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