ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart06e09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_482929.1| Oryza sativa (japonica cultivar-group), mRNA 176 4e-41
2ref|XM_507269.1| PREDICTED Oryza sativa (japonica cultivar-group... 176 4e-41
3dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 176 4e-41
4dbj|AP004399.3| Oryza sativa (japonica cultivar-group) genomic D... 176 4e-41
5dbj|AP004154.3| Oryza sativa (japonica cultivar-group) genomic D... 176 4e-41
6dbj|AK073975.1| Oryza sativa (japonica cultivar-group) cDNA clon... 176 4e-41
7dbj|AK060706.1| Oryza sativa (japonica cultivar-group) cDNA clon... 176 4e-41
8dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.40
9dbj|AP006849.2| Oryza sativa (japonica cultivar-group) genomic D... 44 0.40
10dbj|AK064734.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.40
11ref|XM_417885.1| PREDICTED: Gallus gallus similar to A930008A22R... 42 1.6
12ref|XM_777505.1| PREDICTED: Strongylocentrotus purpuratus simila... 42 1.6
13gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 42 1.6
14ref|XM_469528.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.3
15gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 40 6.3
16gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 6.3
17emb|AL939125.1|SCO939125 Streptomyces coelicolor A3(2) complete ... 40 6.3
18gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete g... 40 6.3
19dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
20gb|AC082645.13|AC082645 Oryza sativa chromosome 3 BAC OSJNBb0033... 40 6.3
21gb|AC026029.8| Homo sapiens BAC clone RP11-16G16 from 4, complet... 40 6.3
22dbj|AB180689.1| Oryza sativa (japonica cultivar-group) OsGS1;3 m... 40 6.3
23gb|AC019044.6| Homo sapiens BAC clone RP11-12F4 from 2, complete... 40 6.3
24dbj|AK099290.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.3
25dbj|AK063913.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.3
26gb|AF044724.1|AF044724 Geomys knoxjonesi alcohol dehydrogenase (... 40 6.3
27gb|AY539478.1| Salarias fasciatus TMO-4c4 gene, partial sequence 40 6.3
28gb|L15462.1|PPGADHAA Geomys knoxjonesi (clone p30715-2) alcohol ... 40 6.3
29emb|AL824705.5| Mouse DNA sequence from clone RP23-102G9 on chro... 40 6.3 
>ref|XM_482929.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1377

 Score =  176 bits (89), Expect = 4e-41
 Identities = 146/165 (88%)
 Strand = Plus / Minus

                                                                        
Query: 303  gatgaccttgtcctgggcgacggcctccgggcagagaggctcgaggaggtggaaggtgtg 362
            ||||||||||||||| |||| |||| |   |||| | ||||||||||||||||| |||||
Sbjct: 1045 gatgaccttgtcctgcgcgatggccgcgtcgcagtgcggctcgaggaggtggaacgtgtg 986

                                                                        
Query: 363  ccccttccccggcgcctgccatatgtcggcctccccgctccacccgctggccctgagccg 422
            ||||||| |||||||||||||||| || ||||| |||| ||||||||| | | |||||||
Sbjct: 985  ccccttctccggcgcctgccatatctccgcctcgccgcgccacccgctcgacgtgagccg 926

                                                         
Query: 423  gtcgtagtaagcgcggccgcggtcgcggagcacgtcaccctcgcc 467
            ||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 925  gtcgtagtaggcgcggccgcggtcgcggagcacgtcgccctcgcc 881
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>ref|XM_507269.1| PREDICTED Oryza sativa (japonica cultivar-group), P0451G12.24 mRNA
          Length = 1426

 Score =  176 bits (89), Expect = 4e-41
 Identities = 146/165 (88%)
 Strand = Plus / Minus

                                                                        
Query: 303  gatgaccttgtcctgggcgacggcctccgggcagagaggctcgaggaggtggaaggtgtg 362
            ||||||||||||||| |||| |||| |   |||| | ||||||||||||||||| |||||
Sbjct: 1047 gatgaccttgtcctgcgcgatggccgcgtcgcagtgcggctcgaggaggtggaacgtgtg 988

                                                                        
Query: 363  ccccttccccggcgcctgccatatgtcggcctccccgctccacccgctggccctgagccg 422
            ||||||| |||||||||||||||| || ||||| |||| ||||||||| | | |||||||
Sbjct: 987  ccccttctccggcgcctgccatatctccgcctcgccgcgccacccgctcgacgtgagccg 928

                                                         
Query: 423  gtcgtagtaagcgcggccgcggtcgcggagcacgtcaccctcgcc 467
            ||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 927  gtcgtagtaggcgcggccgcggtcgcggagcacgtcgccctcgcc 883
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  176 bits (89), Expect = 4e-41
 Identities = 146/165 (88%)
 Strand = Plus / Minus

                                                                            
Query: 303      gatgaccttgtcctgggcgacggcctccgggcagagaggctcgaggaggtggaaggtgtg 362
                ||||||||||||||| |||| |||| |   |||| | ||||||||||||||||| |||||
Sbjct: 23412544 gatgaccttgtcctgcgcgatggccgcgtcgcagtgcggctcgaggaggtggaacgtgtg 23412485

                                                                            
Query: 363      ccccttccccggcgcctgccatatgtcggcctccccgctccacccgctggccctgagccg 422
                ||||||| |||||||||||||||| || ||||| |||| ||||||||| | | |||||||
Sbjct: 23412484 ccccttctccggcgcctgccatatctccgcctcgccgcgccacccgctcgacgtgagccg 23412425

                                                             
Query: 423      gtcgtagtaagcgcggccgcggtcgcggagcacgtcaccctcgcc 467
                ||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 23412424 gtcgtagtaggcgcggccgcggtcgcggagcacgtcgccctcgcc 23412380
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>dbj|AP004399.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0451G12
          Length = 142182

 Score =  176 bits (89), Expect = 4e-41
 Identities = 146/165 (88%)
 Strand = Plus / Minus

                                                                         
Query: 303   gatgaccttgtcctgggcgacggcctccgggcagagaggctcgaggaggtggaaggtgtg 362
             ||||||||||||||| |||| |||| |   |||| | ||||||||||||||||| |||||
Sbjct: 94381 gatgaccttgtcctgcgcgatggccgcgtcgcagtgcggctcgaggaggtggaacgtgtg 94322

                                                                         
Query: 363   ccccttccccggcgcctgccatatgtcggcctccccgctccacccgctggccctgagccg 422
             ||||||| |||||||||||||||| || ||||| |||| ||||||||| | | |||||||
Sbjct: 94321 ccccttctccggcgcctgccatatctccgcctcgccgcgccacccgctcgacgtgagccg 94262

                                                          
Query: 423   gtcgtagtaagcgcggccgcggtcgcggagcacgtcaccctcgcc 467
             ||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 94261 gtcgtagtaggcgcggccgcggtcgcggagcacgtcgccctcgcc 94217
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>dbj|AP004154.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
            clone:OJ1111_E05
          Length = 126978

 Score =  176 bits (89), Expect = 4e-41
 Identities = 146/165 (88%)
 Strand = Plus / Minus

                                                                        
Query: 303  gatgaccttgtcctgggcgacggcctccgggcagagaggctcgaggaggtggaaggtgtg 362
            ||||||||||||||| |||| |||| |   |||| | ||||||||||||||||| |||||
Sbjct: 3959 gatgaccttgtcctgcgcgatggccgcgtcgcagtgcggctcgaggaggtggaacgtgtg 3900

                                                                        
Query: 363  ccccttccccggcgcctgccatatgtcggcctccccgctccacccgctggccctgagccg 422
            ||||||| |||||||||||||||| || ||||| |||| ||||||||| | | |||||||
Sbjct: 3899 ccccttctccggcgcctgccatatctccgcctcgccgcgccacccgctcgacgtgagccg 3840

                                                         
Query: 423  gtcgtagtaagcgcggccgcggtcgcggagcacgtcaccctcgcc 467
            ||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 3839 gtcgtagtaggcgcggccgcggtcgcggagcacgtcgccctcgcc 3795
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>dbj|AK073975.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033072F03, full
            insert sequence
          Length = 1377

 Score =  176 bits (89), Expect = 4e-41
 Identities = 146/165 (88%)
 Strand = Plus / Minus

                                                                        
Query: 303  gatgaccttgtcctgggcgacggcctccgggcagagaggctcgaggaggtggaaggtgtg 362
            ||||||||||||||| |||| |||| |   |||| | ||||||||||||||||| |||||
Sbjct: 1045 gatgaccttgtcctgcgcgatggccgcgtcgcagtgcggctcgaggaggtggaacgtgtg 986

                                                                        
Query: 363  ccccttccccggcgcctgccatatgtcggcctccccgctccacccgctggccctgagccg 422
            ||||||| |||||||||||||||| || ||||| |||| ||||||||| | | |||||||
Sbjct: 985  ccccttctccggcgcctgccatatctccgcctcgccgcgccacccgctcgacgtgagccg 926

                                                         
Query: 423  gtcgtagtaagcgcggccgcggtcgcggagcacgtcaccctcgcc 467
            ||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 925  gtcgtagtaggcgcggccgcggtcgcggagcacgtcgccctcgcc 881
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>dbj|AK060706.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-030-H02, full
            insert sequence
          Length = 1426

 Score =  176 bits (89), Expect = 4e-41
 Identities = 146/165 (88%)
 Strand = Plus / Minus

                                                                        
Query: 303  gatgaccttgtcctgggcgacggcctccgggcagagaggctcgaggaggtggaaggtgtg 362
            ||||||||||||||| |||| |||| |   |||| | ||||||||||||||||| |||||
Sbjct: 1047 gatgaccttgtcctgcgcgatggccgcgtcgcagtgcggctcgaggaggtggaacgtgtg 988

                                                                        
Query: 363  ccccttccccggcgcctgccatatgtcggcctccccgctccacccgctggccctgagccg 422
            ||||||| |||||||||||||||| || ||||| |||| ||||||||| | | |||||||
Sbjct: 987  ccccttctccggcgcctgccatatctccgcctcgccgcgccacccgctcgacgtgagccg 928

                                                         
Query: 423  gtcgtagtaagcgcggccgcggtcgcggagcacgtcaccctcgcc 467
            ||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 927  gtcgtagtaggcgcggccgcggtcgcggagcacgtcgccctcgcc 883
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 43/50 (86%)
 Strand = Plus / Plus

                                                                  
Query: 402      ccacccgctggccctgagccggtcgtagtaagcgcggccgcggtcgcgga 451
                ||||||||| ||| | ||||  ||| |||| |||||||||||||||||||
Sbjct: 17416668 ccacccgctcgccttaagcccctcgcagtacgcgcggccgcggtcgcgga 17416717
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>dbj|AP006849.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OSJNBa0054F02
          Length = 180651

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 43/50 (86%)
 Strand = Plus / Plus

                                                                
Query: 402    ccacccgctggccctgagccggtcgtagtaagcgcggccgcggtcgcgga 451
              ||||||||| ||| | ||||  ||| |||| |||||||||||||||||||
Sbjct: 140581 ccacccgctcgccttaagcccctcgcagtacgcgcggccgcggtcgcgga 140630
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>dbj|AK064734.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-120-C05, full
           insert sequence
          Length = 1162

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                             
Query: 402 ccacccgctggccctgagccggtcgtagtaagcgcggccgcggtcgcgga 451
           ||||||||| ||| | ||||  ||| |||| |||||||||||||||||||
Sbjct: 891 ccacccgctcgccttaagcccctcgcagtacgcgcggccgcggtcgcgga 842
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>ref|XM_417885.1| PREDICTED: Gallus gallus similar to A930008A22Rik protein
           (LOC419746), mRNA
          Length = 1626

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                
Query: 373 ggcgcctgccatatgtcggcctccccgctccacccgc 409
           ||||||||||||   |||||||||||||||| |||||
Sbjct: 268 ggcgcctgccatggttcggcctccccgctccccccgc 232
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>ref|XM_777505.1| PREDICTED: Strongylocentrotus purpuratus similar to BAP28 protein
            (LOC577264), mRNA
          Length = 2553

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 203  agcagcatccatgaactgaacgatg 227
            ||||||| |||||||||||||||||
Sbjct: 2286 agcagcaaccatgaactgaacgatg 2262
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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 418     agccggtcgtagtaagcgcgg 438
               |||||||||||||||||||||
Sbjct: 3004292 agccggtcgtagtaagcgcgg 3004272



 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 298     tcggcgatgaccttgtcctgggcg 321
               ||||||||||||||| ||||||||
Sbjct: 3226376 tcggcgatgaccttggcctgggcg 3226353
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>ref|XM_469528.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1113

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 296 actcggcgatgaccttgtcc 315
           ||||||||||||||||||||
Sbjct: 73  actcggcgatgaccttgtcc 54
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>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 433     gcgcggccgcggtcgcggagcacg 456
               ||||||||||||||||||| ||||
Sbjct: 2295635 gcgcggccgcggtcgcggatcacg 2295658
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 296      actcggcgatgaccttgtcc 315
                ||||||||||||||||||||
Sbjct: 28531200 actcggcgatgaccttgtcc 28531219
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>emb|AL939125.1|SCO939125 Streptomyces coelicolor A3(2) complete genome; segment 22/29
          Length = 295150

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 439    ccgcggtcgcggagcacgtc 458
              ||||||||||||||||||||
Sbjct: 260262 ccgcggtcgcggagcacgtc 260243
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>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 298    tcggcgatgaccttgtcctg 317
              ||||||||||||||||||||
Sbjct: 627138 tcggcgatgaccttgtcctg 627119
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 296      actcggcgatgaccttgtcc 315
                ||||||||||||||||||||
Sbjct: 28622524 actcggcgatgaccttgtcc 28622543
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>gb|AC082645.13|AC082645 Oryza sativa chromosome 3 BAC OSJNBb0033N16 genomic sequence, complete
              sequence
          Length = 143681

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 296    actcggcgatgaccttgtcc 315
              ||||||||||||||||||||
Sbjct: 125330 actcggcgatgaccttgtcc 125349
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>gb|AC026029.8| Homo sapiens BAC clone RP11-16G16 from 4, complete sequence
          Length = 173067

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 165   caccaacacaaatctgaattctga 188
             ||||||||||||||||||| ||||
Sbjct: 76831 caccaacacaaatctgaatactga 76854
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>dbj|AB180689.1| Oryza sativa (japonica cultivar-group) OsGS1;3 mRNA for cytosolic
           glutamine synthetase 1;3, complete cds
          Length = 1543

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 296 actcggcgatgaccttgtcc 315
           ||||||||||||||||||||
Sbjct: 241 actcggcgatgaccttgtcc 222
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>gb|AC019044.6| Homo sapiens BAC clone RP11-12F4 from 2, complete sequence
          Length = 126497

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 35    ctctgtatgaaactattaat 54
             ||||||||||||||||||||
Sbjct: 72954 ctctgtatgaaactattaat 72935
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>dbj|AK099290.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023127P21, full
           insert sequence
          Length = 1457

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 296 actcggcgatgaccttgtcc 315
           ||||||||||||||||||||
Sbjct: 194 actcggcgatgaccttgtcc 175
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>dbj|AK063913.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-123-A09, full
           insert sequence
          Length = 1494

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 296 actcggcgatgaccttgtcc 315
           ||||||||||||||||||||
Sbjct: 194 actcggcgatgaccttgtcc 175
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>gb|AF044724.1|AF044724 Geomys knoxjonesi alcohol dehydrogenase (ADH1) mRNA, allele K'',
           complete cds
          Length = 1128

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 343 tcgaggaggtggaaggtgtgcccc 366
           ||||||||||||||| ||||||||
Sbjct: 71  tcgaggaggtggaagttgtgcccc 94
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>gb|AY539478.1| Salarias fasciatus TMO-4c4 gene, partial sequence
          Length = 464

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 392 cctccccgctccacccgctg 411
           ||||||||||||||||||||
Sbjct: 264 cctccccgctccacccgctg 283
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>gb|L15462.1|PPGADHAA Geomys knoxjonesi (clone p30715-2) alcohol dhydrogenase (ADH1)
           mRNA, complete cds
          Length = 1128

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 343 tcgaggaggtggaaggtgtgcccc 366
           ||||||||||||||| ||||||||
Sbjct: 71  tcgaggaggtggaagttgtgcccc 94
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>emb|AL824705.5| Mouse DNA sequence from clone RP23-102G9 on chromosome 4, complete
            sequence
          Length = 144458

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 170  acacaaatctgaattctgaa 189
            ||||||||||||||||||||
Sbjct: 8463 acacaaatctgaattctgaa 8444


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,430,171
Number of Sequences: 3902068
Number of extensions: 3430171
Number of successful extensions: 65669
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 65337
Number of HSP's gapped (non-prelim): 325
length of query: 467
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 445
effective length of database: 17,147,199,772
effective search space: 7630503898540
effective search space used: 7630503898540
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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