ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart06e07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 66 1e-07
2dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 66 1e-07
3gb|AC125471.3| Oryza sativa (japonica cultivar-group) chromosome... 66 1e-07
4gb|AC113249.2| Oryza sativa (japonica cultivar-group) chromosome... 62 2e-06
5dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 62 2e-06
6gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 62 2e-06
7dbj|AK108939.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 3e-05
8gb|AC146310.2| Oryza sativa (japonica cultivar-group) chromosome... 56 1e-04
9dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 56 1e-04
10dbj|AK066965.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 1e-04
11dbj|AK060656.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 1e-04
12gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 56 1e-04
13dbj|AK061327.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 4e-04
14ref|NM_196170.1| Oryza sativa (japonica cultivar-group) putative... 52 0.002
15gb|AC114474.2| Genomic sequence for Oryza sativa, Nipponbare str... 52 0.002
16ref|XM_383826.1| Gibberella zeae PH-1 chromosome 2 hypothetical ... 46 0.096
17gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, comp... 42 1.5
18gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 42 1.5
19emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 42 1.5
20gb|AE005059.1| Halobacterium sp. NRC-1 section 90 of 170 of the ... 42 1.5
21ref|NM_185112.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.9
22ref|XM_450191.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.9
23gb|AC120527.3| Oryza sativa (japonica cultivar-group) chromosome... 40 5.9
24gb|AC147812.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.9
25gb|AE009321.1| Agrobacterium tumefaciens str. C58 linear chromos... 40 5.9
26gb|AE008293.1| Agrobacterium tumefaciens str. C58 linear chromos... 40 5.9
27gb|AC104833.6| Mus Musculus Strain C57BL6/J Chromosome 15 BAC, R... 40 5.9
28gb|AC096687.5| Oryza sativa chromosome 3 BAC OSJNBa0010E04 genom... 40 5.9
29gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, comple... 40 5.9
30emb|BX323601.6| Zebrafish DNA sequence from clone RP71-14P11, co... 40 5.9
31gb|AY257863.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.9
32dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
33gb|AC087549.2|AC087549 Oryza sativa (japonica cultivar-group) ch... 40 5.9
34gb|AC138136.2| Homo sapiens chromosome 8, clone RP11-158D1, comp... 40 5.9
35gb|AC090453.4| Homo sapiens chromosome 8, clone RP11-380B11, com... 40 5.9
36dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 5.9
37gb|AF039573.1|AF039573 Oryza sativa abscisic acid- and stress-in... 40 5.9
38dbj|AK119547.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.9
39dbj|AK119208.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.9
40dbj|AK104677.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.9
41emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 40 5.9
42dbj|AK064892.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.9
43dbj|AP006548.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
44dbj|AP006307.1| Homo sapiens genomic DNA, chromosome 8 clone:RP1... 40 5.9
45gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome 40 5.9
46dbj|AP000074.1| Homo sapiens genomic DNA, chromosome 8p11.2, sen... 40 5.9 
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 91/111 (81%)
 Strand = Plus / Plus

                                                                           
Query: 227     gggcaggtccggcgtcacgaacgccgacggcggcccggcgccaaagtcaatctggttgaa 286
               |||||||||||||| || |||||||| |||||  |||| ||| | ||| ||||||| |||
Sbjct: 4474475 gggcaggtccggcggcaggaacgccgccggcgagccggtgccgaggtccatctggtggaa 4474534

                                                                  
Query: 287     cctaanacccaggctgctgtccacctccnggtccgggcagaacattgtgcc 337
               ||| |  || || | ||| ||||||||| |||||||||| ||||| |||||
Sbjct: 4474535 cctgaacccgagccagctatccacctccaggtccgggcacaacatcgtgcc 4474585



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                                   
Query: 389     gccgaagtccacgaacgactggatgtactcggcgtc 424
               ||||||||| ||||||||||||||||||||| ||||
Sbjct: 4474646 gccgaagtcgacgaacgactggatgtactcgccgtc 4474681



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 334      tgccgttgaccgccgccgtggccg 357
                |||||||||||||||||| |||||
Sbjct: 34504516 tgccgttgaccgccgccggggccg 34504539
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 91/111 (81%)
 Strand = Plus / Plus

                                                                           
Query: 227     gggcaggtccggcgtcacgaacgccgacggcggcccggcgccaaagtcaatctggttgaa 286
               |||||||||||||| || |||||||| |||||  |||| ||| | ||| ||||||| |||
Sbjct: 4474590 gggcaggtccggcggcaggaacgccgccggcgagccggtgccgaggtccatctggtggaa 4474649

                                                                  
Query: 287     cctaanacccaggctgctgtccacctccnggtccgggcagaacattgtgcc 337
               ||| |  || || | ||| ||||||||| |||||||||| ||||| |||||
Sbjct: 4474650 cctgaacccgagccagctatccacctccaggtccgggcacaacatcgtgcc 4474700



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                                   
Query: 389     gccgaagtccacgaacgactggatgtactcggcgtc 424
               ||||||||| ||||||||||||||||||||| ||||
Sbjct: 4474761 gccgaagtcgacgaacgactggatgtactcgccgtc 4474796



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 334      tgccgttgaccgccgccgtggccg 357
                |||||||||||||||||| |||||
Sbjct: 34594588 tgccgttgaccgccgccggggccg 34594611
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>gb|AC125471.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0042J17, complete sequence
          Length = 171442

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 91/111 (81%)
 Strand = Plus / Plus

                                                                         
Query: 227   gggcaggtccggcgtcacgaacgccgacggcggcccggcgccaaagtcaatctggttgaa 286
             |||||||||||||| || |||||||| |||||  |||| ||| | ||| ||||||| |||
Sbjct: 79767 gggcaggtccggcggcaggaacgccgccggcgagccggtgccgaggtccatctggtggaa 79826

                                                                
Query: 287   cctaanacccaggctgctgtccacctccnggtccgggcagaacattgtgcc 337
             ||| |  || || | ||| ||||||||| |||||||||| ||||| |||||
Sbjct: 79827 cctgaacccgagccagctatccacctccaggtccgggcacaacatcgtgcc 79877



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                                 
Query: 389   gccgaagtccacgaacgactggatgtactcggcgtc 424
             ||||||||| ||||||||||||||||||||| ||||
Sbjct: 79938 gccgaagtcgacgaacgactggatgtactcgccgtc 79973
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>gb|AC113249.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0041L19, complete sequence
          Length = 155086

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 95/117 (81%)
 Strand = Plus / Plus

                                                                         
Query: 209   gatcatgaggccctcgttgggcaggtccggcgtcacgaacgccgacggcggcccggcgcc 268
             |||||| || |||||| ||||||||||||||| || ||  || | ||||||||||| |||
Sbjct: 88069 gatcatcagcccctcgatgggcaggtccggcgacaggacggcggccggcggcccggtgcc 88128

                                                                      
Query: 269   aaagtcaatctggttgaacctaanacccaggctgctgtccacctccnggtccgggca 325
              | ||| |||| || |||||| |  || || | ||||||||||||| ||||||||||
Sbjct: 88129 gaggtccatctcgtggaacctgaacccgagccagctgtccacctccaggtccgggca 88185



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                                  
Query: 394   agtccacgaacgactggatgtactcggcgtccacgcg 430
             |||| |||||||||||||||||||||||||| |||||
Sbjct: 88254 agtcgacgaacgactggatgtactcggcgtcgacgcg 88290



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 94/117 (80%)
 Strand = Plus / Minus

                                                                          
Query: 209    gatcatgaggccctcgttgggcaggtccggcgtcacgaacgccgacggcggcccggcgcc 268
              |||||| || |||||| ||||||||||||||| ||  |  || | ||||||||||| |||
Sbjct: 124034 gatcatcagcccctcgatgggcaggtccggcgacagcacggcggccggcggcccggtgcc 123975

                                                                       
Query: 269    aaagtcaatctggttgaacctaanacccaggctgctgtccacctccnggtccgggca 325
               | ||| |||| || |||||| |  || || | ||||||||||||| ||||||||||
Sbjct: 123974 gaggtccatctcgtggaacctgaacccgagccagctgtccacctccaggtccgggca 123918



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                   
Query: 394    agtccacgaacgactggatgtactcggcgtccacgcg 430
              |||| ||||||||||||||||||||| |||| |||||
Sbjct: 123849 agtcgacgaacgactggatgtactcgccgtcgacgcg 123813
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 95/117 (81%)
 Strand = Plus / Plus

                                                                            
Query: 209      gatcatgaggccctcgttgggcaggtccggcgtcacgaacgccgacggcggcccggcgcc 268
                |||||| || |||||| ||||||||||||||| || ||  || | ||||||||||| |||
Sbjct: 24611167 gatcatcagcccctcgatgggcaggtccggcgacaggacggcggccggcggcccggtgcc 24611226

                                                                         
Query: 269      aaagtcaatctggttgaacctaanacccaggctgctgtccacctccnggtccgggca 325
                 | ||| |||| || |||||| |  || || | ||||||||||||| ||||||||||
Sbjct: 24611227 gaggtccatctcgtggaacctgaacccgagccagctgtccacctccaggtccgggca 24611283



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                                     
Query: 394      agtccacgaacgactggatgtactcggcgtccacgcg 430
                |||| |||||||||||||||||||||||||| |||||
Sbjct: 24611352 agtcgacgaacgactggatgtactcggcgtcgacgcg 24611388



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 94/117 (80%)
 Strand = Plus / Minus

                                                                            
Query: 209      gatcatgaggccctcgttgggcaggtccggcgtcacgaacgccgacggcggcccggcgcc 268
                |||||| || |||||| ||||||||||||||| ||  |  || | ||||||||||| |||
Sbjct: 24647132 gatcatcagcccctcgatgggcaggtccggcgacagcacggcggccggcggcccggtgcc 24647073

                                                                         
Query: 269      aaagtcaatctggttgaacctaanacccaggctgctgtccacctccnggtccgggca 325
                 | ||| |||| || |||||| |  || || | ||||||||||||| ||||||||||
Sbjct: 24647072 gaggtccatctcgtggaacctgaacccgagccagctgtccacctccaggtccgggca 24647016



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                     
Query: 394      agtccacgaacgactggatgtactcggcgtccacgcg 430
                |||| ||||||||||||||||||||| |||| |||||
Sbjct: 24646947 agtcgacgaacgactggatgtactcgccgtcgacgcg 24646911



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 341     gaccgccgccgtggccgggagctcctcc 368
               ||||||||||||||||| || |||||||
Sbjct: 3259294 gaccgccgccgtggccgcgatctcctcc 3259321
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 95/117 (81%)
 Strand = Plus / Plus

                                                                            
Query: 209      gatcatgaggccctcgttgggcaggtccggcgtcacgaacgccgacggcggcccggcgcc 268
                |||||| || |||||| ||||||||||||||| || ||  || | ||||||||||| |||
Sbjct: 24922837 gatcatcagcccctcgatgggcaggtccggcgacaggacggcggccggcggcccggtgcc 24922896

                                                                         
Query: 269      aaagtcaatctggttgaacctaanacccaggctgctgtccacctccnggtccgggca 325
                 | ||| |||| || |||||| |  || || | ||||||||||||| ||||||||||
Sbjct: 24922897 gaggtccatctcgtggaacctgaacccgagccagctgtccacctccaggtccgggca 24922953



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                                     
Query: 394      agtccacgaacgactggatgtactcggcgtccacgcg 430
                |||| |||||||||||||||||||||||||| |||||
Sbjct: 24923022 agtcgacgaacgactggatgtactcggcgtcgacgcg 24923058



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 94/117 (80%)
 Strand = Plus / Minus

                                                                            
Query: 209      gatcatgaggccctcgttgggcaggtccggcgtcacgaacgccgacggcggcccggcgcc 268
                |||||| || |||||| ||||||||||||||| ||  |  || | ||||||||||| |||
Sbjct: 24958802 gatcatcagcccctcgatgggcaggtccggcgacagcacggcggccggcggcccggtgcc 24958743

                                                                         
Query: 269      aaagtcaatctggttgaacctaanacccaggctgctgtccacctccnggtccgggca 325
                 | ||| |||| || |||||| |  || || | ||||||||||||| ||||||||||
Sbjct: 24958742 gaggtccatctcgtggaacctgaacccgagccagctgtccacctccaggtccgggca 24958686



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                     
Query: 394      agtccacgaacgactggatgtactcggcgtccacgcg 430
                |||| ||||||||||||||||||||| |||| |||||
Sbjct: 24958617 agtcgacgaacgactggatgtactcgccgtcgacgcg 24958581



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 341     gaccgccgccgtggccgggagctcctcc 368
               ||||||||||||||||| || |||||||
Sbjct: 3267999 gaccgccgccgtggccgcgatctcctcc 3268026
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>dbj|AK108939.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-153-B05, full
            insert sequence
          Length = 1965

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 90/111 (81%)
 Strand = Plus / Minus

                                                                        
Query: 227  gggcaggtccggcgtcacgaacgccgacggcggcccggcgccaaagtcaatctggttgaa 286
            |||||||||||||| || |||||||| |||||  |||| ||| | ||| ||||||| |||
Sbjct: 1246 gggcaggtccggcggcaggaacgccgccggcgagccggtgccgaggtccatctggtggaa 1187

                                                               
Query: 287  cctaanacccaggctgctgtccacctccnggtccgggcagaacattgtgcc 337
            ||| |  || || | ||| ||||||||| |||| ||||| ||||| |||||
Sbjct: 1186 cctgaacccgagccagctatccacctccaggtctgggcacaacatcgtgcc 1136



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                
Query: 389  gccgaagtccacgaacgactggatgtactcggcgtc 424
            ||||||||| ||||||||||||||||||||| ||||
Sbjct: 1075 gccgaagtcgacgaacgactggatgtactcgccgtc 1040
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>gb|AC146310.2| Oryza sativa (japonica cultivar-group) chromosome 10 clone B1082A06,
              complete sequence
          Length = 135774

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                          
Query: 389    gccgaagtccacgaacgactggatgtac 416
              ||||||||||||||||||||||||||||
Sbjct: 119853 gccgaagtccacgaacgactggatgtac 119880



 Score = 44.1 bits (22), Expect = 0.38
 Identities = 83/104 (79%)
 Strand = Plus / Plus

                                                                          
Query: 226    tgggcaggtccggcgtcacgaacgccgacggcggcccggcgccaaagtcaatctggttga 285
              |||||| |||||||| || ||||||  ||||||||||| |||| ||||| |  | || ||
Sbjct: 119696 tgggcacgtccggcggcaggaacgcgcacggcggcccgccgccgaagtcgaggtcgtgga 119755

                                                          
Query: 286    acctaanacccaggctgctgtccacctccnggtccgggcagaac 329
              |||| |  || |  | |||||| |||||| ||||||||||||||
Sbjct: 119756 acctgaaccctatccagctgtcgacctccaggtccgggcagaac 119799
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                            
Query: 389      gccgaagtccacgaacgactggatgtac 416
                ||||||||||||||||||||||||||||
Sbjct: 11665918 gccgaagtccacgaacgactggatgtac 11665945



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                             
Query: 302      gctgtccacctccnggtccgggcagaaca 330
                ||||||||||||| |||||||||||||||
Sbjct: 11699614 gctgtccacctccaggtccgggcagaaca 11699586



 Score = 48.1 bits (24), Expect = 0.024
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                            
Query: 390      ccgaagtccacgaacgactggatgtact 417
                |||||||| |||||||||||||||||||
Sbjct: 11699532 ccgaagtcgacgaacgactggatgtact 11699505



 Score = 44.1 bits (22), Expect = 0.38
 Identities = 83/104 (79%)
 Strand = Plus / Plus

                                                                            
Query: 226      tgggcaggtccggcgtcacgaacgccgacggcggcccggcgccaaagtcaatctggttga 285
                |||||| |||||||| || ||||||  ||||||||||| |||| ||||| |  | || ||
Sbjct: 11665761 tgggcacgtccggcggcaggaacgcgcacggcggcccgccgccgaagtcgaggtcgtgga 11665820

                                                            
Query: 286      acctaanacccaggctgctgtccacctccnggtccgggcagaac 329
                |||| |  || |  | |||||| |||||| ||||||||||||||
Sbjct: 11665821 acctgaaccctatccagctgtcgacctccaggtccgggcagaac 11665864



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 343      ccgccgccgtggccgggagc 362
                ||||||||||||||||||||
Sbjct: 16104380 ccgccgccgtggccgggagc 16104399
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>dbj|AK066965.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013092H19, full
           insert sequence
          Length = 996

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 28/28 (100%)
 Strand = Plus / Minus

                                       
Query: 390 ccgaagtccacgaacgactggatgtact 417
           ||||||||||||||||||||||||||||
Sbjct: 631 ccgaagtccacgaacgactggatgtact 604



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                        
Query: 302 gctgtccacctccnggtccgggcagaaca 330
           ||||||||||||| |||||||||||||||
Sbjct: 713 gctgtccacctccaggtccgggcagaaca 685
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>dbj|AK060656.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-028-A04, full
            insert sequence
          Length = 1482

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 28/28 (100%)
 Strand = Plus / Minus

                                        
Query: 390  ccgaagtccacgaacgactggatgtact 417
            ||||||||||||||||||||||||||||
Sbjct: 1117 ccgaagtccacgaacgactggatgtact 1090



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                         
Query: 302  gctgtccacctccnggtccgggcagaaca 330
            ||||||||||||| |||||||||||||||
Sbjct: 1199 gctgtccacctccaggtccgggcagaaca 1171
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                            
Query: 389      gccgaagtccacgaacgactggatgtac 416
                ||||||||||||||||||||||||||||
Sbjct: 11672358 gccgaagtccacgaacgactggatgtac 11672385



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                             
Query: 302      gctgtccacctccnggtccgggcagaaca 330
                ||||||||||||| |||||||||||||||
Sbjct: 11706954 gctgtccacctccaggtccgggcagaaca 11706926



 Score = 48.1 bits (24), Expect = 0.024
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                            
Query: 390      ccgaagtccacgaacgactggatgtact 417
                |||||||| |||||||||||||||||||
Sbjct: 11706872 ccgaagtcgacgaacgactggatgtact 11706845



 Score = 44.1 bits (22), Expect = 0.38
 Identities = 83/104 (79%)
 Strand = Plus / Plus

                                                                            
Query: 226      tgggcaggtccggcgtcacgaacgccgacggcggcccggcgccaaagtcaatctggttga 285
                |||||| |||||||| || ||||||  ||||||||||| |||| ||||| |  | || ||
Sbjct: 11672201 tgggcacgtccggcggcaggaacgcgcacggcggcccgccgccgaagtcgaggtcgtgga 11672260

                                                            
Query: 286      acctaanacccaggctgctgtccacctccnggtccgggcagaac 329
                |||| |  || |  | |||||| |||||| ||||||||||||||
Sbjct: 11672261 acctgaaccctatccagctgtcgacctccaggtccgggcagaac 11672304



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 343      ccgccgccgtggccgggagc 362
                ||||||||||||||||||||
Sbjct: 16112621 ccgccgccgtggccgggagc 16112640
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>dbj|AK061327.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-H12, full
            insert sequence
          Length = 1584

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 94/117 (80%)
 Strand = Plus / Minus

                                                                        
Query: 209  gatcatgaggccctcgttgggcaggtccggcgtcacgaacgccgacggcggcccggcgcc 268
            |||||| || |||||| ||||||||||||||| ||  |  || | ||||||||||| |||
Sbjct: 1260 gatcatcagcccctcgatgggcaggtccggcgacagcacggcggccggcggcccggtgcc 1201

                                                                     
Query: 269  aaagtcaatctggttgaacctaanacccaggctgctgtccacctccnggtccgggca 325
             | ||| |||| || |||||| |  || || | ||||||||||||| ||||||||||
Sbjct: 1200 gaggtccatctcgtggaacctgaacccgagccagctgtccacctccaggtccgggca 1144



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                 
Query: 394  agtccacgaacgactggatgtactcggcgtccacgcg 430
            |||| ||||||||||||||||||||| |||| |||||
Sbjct: 1075 agtcgacgaacgactggatgtactcgccgtcgacgcg 1039
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>ref|NM_196170.1| Oryza sativa (japonica cultivar-group) putative anthranilate
            N-benzoyltransferase (OSJNBa0032N04.2), mRNA
          Length = 1305

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                         
Query: 302  gctgtccacctccnggtccgggcagaaca 330
            ||||||||||||| |||||||||||||||
Sbjct: 1110 gctgtccacctccaggtccgggcagaaca 1082



 Score = 48.1 bits (24), Expect = 0.024
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 390  ccgaagtccacgaacgactggatgtact 417
            |||||||| |||||||||||||||||||
Sbjct: 1028 ccgaagtcgacgaacgactggatgtact 1001
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>gb|AC114474.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0032N04, from chromosome 10, complete sequence
          Length = 159445

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                          
Query: 302   gctgtccacctccnggtccgggcagaaca 330
             ||||||||||||| |||||||||||||||
Sbjct: 17675 gctgtccacctccaggtccgggcagaaca 17647



 Score = 48.1 bits (24), Expect = 0.024
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                         
Query: 390   ccgaagtccacgaacgactggatgtact 417
             |||||||| |||||||||||||||||||
Sbjct: 17593 ccgaagtcgacgaacgactggatgtact 17566
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>ref|XM_383826.1| Gibberella zeae PH-1 chromosome 2 hypothetical protein (FG03650.1)
           partial mRNA
          Length = 1014

 Score = 46.1 bits (23), Expect = 0.096
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 414 tactcggcgtccacgcgggcgac 436
           |||||||||||||||||||||||
Sbjct: 62  tactcggcgtccacgcgggcgac 84
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>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 244   cgaacgccgacggcggcccggcgcc 268
             ||||||||||||||||| |||||||
Sbjct: 87387 cgaacgccgacggcggcgcggcgcc 87411
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>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 244    cgaacgccgacggcggcccggcgcc 268
              ||||||||||||||||| |||||||
Sbjct: 612788 cgaacgccgacggcggcgcggcgcc 612764
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>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 244    cgaacgccgacggcggcccggcgcc 268
              ||||||||||||||||| |||||||
Sbjct: 421325 cgaacgccgacggcggcgcggcgcc 421301
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>gb|AE005059.1| Halobacterium sp. NRC-1 section 90 of 170 of the complete genome
          Length = 10369

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 235  ccggcgtcacgaacgccgacggcgg 259
            ||||| |||||||||||||||||||
Sbjct: 2149 ccggcctcacgaacgccgacggcgg 2173
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>ref|NM_185112.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 225

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 334 tgccgttgaccgccgccgtggccg 357
           |||||||||||||||||| |||||
Sbjct: 166 tgccgttgaccgccgccggggccg 143
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>ref|XM_450191.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1359

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 41/48 (85%)
 Strand = Plus / Minus

                                                            
Query: 391  cgaagtccacgaacgactggatgtactcggcgtccacgcgggcgacgg 438
            ||||||| ||||||||| ||| |||  |||||||  ||||||||||||
Sbjct: 1078 cgaagtcgacgaacgaccggaagtaggcggcgtcggcgcgggcgacgg 1031
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>gb|AC120527.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0011J22 map R10571S, complete sequence
          Length = 154441

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 341   gaccgccgccgtggccgggagctcctcc 368
             ||||||||||||||||| || |||||||
Sbjct: 55691 gaccgccgccgtggccgcgatctcctcc 55664
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>gb|AC147812.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0073K23
              map near R10571S, complete sequence
          Length = 161073

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 341    gaccgccgccgtggccgggagctcctcc 368
              ||||||||||||||||| || |||||||
Sbjct: 154992 gaccgccgccgtggccgcgatctcctcc 154965
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>gb|AE009321.1| Agrobacterium tumefaciens str. C58 linear chromosome, section 91 of
            187 of the complete sequence
          Length = 10707

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 236  cggcgtcacgaacgccgacg 255
            ||||||||||||||||||||
Sbjct: 1217 cggcgtcacgaacgccgacg 1198
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>gb|AE008293.1| Agrobacterium tumefaciens str. C58 linear chromosome, section 97 of
            187 of the complete sequence
          Length = 10676

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 236  cggcgtcacgaacgccgacg 255
            ||||||||||||||||||||
Sbjct: 9492 cggcgtcacgaacgccgacg 9511
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>gb|AC104833.6| Mus Musculus Strain C57BL6/J Chromosome 15 BAC, RP23-319B16, Complete
             Sequence, complete sequence
          Length = 171061

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 12    atttatttgcaagacacagg 31
             ||||||||||||||||||||
Sbjct: 89305 atttatttgcaagacacagg 89286
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>gb|AC096687.5| Oryza sativa chromosome 3 BAC OSJNBa0010E04 genomic sequence, complete
             sequence
          Length = 117505

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 334   tgccgttgaccgccgccgtggccg 357
             |||||||||||||||||| |||||
Sbjct: 21651 tgccgttgaccgccgccggggccg 21628
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>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome
          Length = 3561584

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 325     agaacattgtgccgttgaccgccg 348
               |||||||||||||||| |||||||
Sbjct: 2822977 agaacattgtgccgttaaccgccg 2823000
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>emb|BX323601.6| Zebrafish DNA sequence from clone RP71-14P11, complete sequence
          Length = 207067

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 339    ttgaccgccgccgtggccgg 358
              ||||||||||||||||||||
Sbjct: 176228 ttgaccgccgccgtggccgg 176247
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>gb|AY257863.1| Oryza sativa (japonica cultivar-group) chromosome 11 genomic sequence
          Length = 42748

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 341   gaccgccgccgtggccgggagctcctcc 368
             ||||||||||||||||| || |||||||
Sbjct: 13508 gaccgccgccgtggccgcgatctcctcc 13535
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 41/48 (85%)
 Strand = Plus / Minus

                                                                
Query: 391      cgaagtccacgaacgactggatgtactcggcgtccacgcgggcgacgg 438
                ||||||| ||||||||| ||| |||  |||||||  ||||||||||||
Sbjct: 21163385 cgaagtcgacgaacgaccggaagtaggcggcgtcggcgcgggcgacgg 21163338
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>gb|AC087549.2|AC087549 Oryza sativa (japonica cultivar-group) chromosome 10 clone nbeb0039C14,
              complete sequence
          Length = 135098

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 343    ccgccgccgtggccgggagc 362
              ||||||||||||||||||||
Sbjct: 119485 ccgccgccgtggccgggagc 119504
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>gb|AC138136.2| Homo sapiens chromosome 8, clone RP11-158D1, complete sequence
          Length = 82309

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 82    tgggagcattttacatcttc 101
             ||||||||||||||||||||
Sbjct: 35973 tgggagcattttacatcttc 35954
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>gb|AC090453.4| Homo sapiens chromosome 8, clone RP11-380B11, complete sequence
          Length = 166452

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 82     tgggagcattttacatcttc 101
              ||||||||||||||||||||
Sbjct: 159610 tgggagcattttacatcttc 159629
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 247    acgccgacggcggcccggcg 266
              ||||||||||||||||||||
Sbjct: 608604 acgccgacggcggcccggcg 608623
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>gb|AF039573.1|AF039573 Oryza sativa abscisic acid- and stress-inducible protein (Asr1)
           mRNA, complete cds
          Length = 836

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 341 gaccgccgccgtggccgggagctcctcc 368
           ||||||||||||||||| || |||||||
Sbjct: 385 gaccgccgccgtggccgcgatctcctcc 358
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>dbj|AK119547.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-207-A11, full
           insert sequence
          Length = 850

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 341 gaccgccgccgtggccgggagctcctcc 368
           ||||||||||||||||| || |||||||
Sbjct: 406 gaccgccgccgtggccgcgatctcctcc 379
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>dbj|AK119208.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-E02, full
           insert sequence
          Length = 817

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 341 gaccgccgccgtggccgggagctcctcc 368
           ||||||||||||||||| || |||||||
Sbjct: 406 gaccgccgccgtggccgcgatctcctcc 379
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>dbj|AK104677.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-D06, full
           insert sequence
          Length = 817

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 341 gaccgccgccgtggccgggagctcctcc 368
           ||||||||||||||||| || |||||||
Sbjct: 406 gaccgccgccgtggccgcgatctcctcc 379
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>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 248   cgccgacggcggcccggcgc 267
             ||||||||||||||||||||
Sbjct: 43471 cgccgacggcggcccggcgc 43452
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>dbj|AK064892.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000K20, full
           insert sequence
          Length = 836

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 341 gaccgccgccgtggccgggagctcctcc 368
           ||||||||||||||||| || |||||||
Sbjct: 409 gaccgccgccgtggccgcgatctcctcc 382
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>dbj|AP006548.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone: P0705E11
          Length = 140729

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 41/48 (85%)
 Strand = Plus / Minus

                                                             
Query: 391   cgaagtccacgaacgactggatgtactcggcgtccacgcgggcgacgg 438
             ||||||| ||||||||| ||| |||  |||||||  ||||||||||||
Sbjct: 34142 cgaagtcgacgaacgaccggaagtaggcggcgtcggcgcgggcgacgg 34095
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>dbj|AP006307.1| Homo sapiens genomic DNA, chromosome 8 clone:RP11-673J3, complete
             sequence
          Length = 143669

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 82    tgggagcattttacatcttc 101
             ||||||||||||||||||||
Sbjct: 71185 tgggagcattttacatcttc 71166
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>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome
          Length = 3551823

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 228     ggcaggtccggcgtcacgaa 247
               ||||||||||||||||||||
Sbjct: 1802698 ggcaggtccggcgtcacgaa 1802679
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>dbj|AP000074.1| Homo sapiens genomic DNA, chromosome 8p11.2, senescence gene region,
             section 10/19, complete sequence
          Length = 100000

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 82    tgggagcattttacatcttc 101
             ||||||||||||||||||||
Sbjct: 81037 tgggagcattttacatcttc 81056


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,491,800
Number of Sequences: 3902068
Number of extensions: 2491800
Number of successful extensions: 44795
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 43868
Number of HSP's gapped (non-prelim): 923
length of query: 440
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 418
effective length of database: 17,147,199,772
effective search space: 7167529504696
effective search space used: 7167529504696
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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