ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart06e02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1HEM2_MYCTU (O33357) Delta-aminolevulinic acid dehydratase (EC 4.... 31 1.9
2HEM2_MYCLE (P46723) Delta-aminolevulinic acid dehydratase (EC 4.... 30 4.1
3HEM2_STRCO (P54919) Delta-aminolevulinic acid dehydratase (EC 4.... 28 9.2

>HEM2_MYCTU (O33357) Delta-aminolevulinic acid dehydratase (EC 4.2.1.24)|
           (Porphobilinogen synthase) (ALAD) (ALADH)
          Length = 329

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 17/26 (65%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
 Frame = -1

Query: 305 AGAFDGPFREAV--SMLSKRRTYLQE 234
           A AF GPFREAV  S+   RRTY QE
Sbjct: 204 ASAFYGPFREAVSSSLSGDRRTYQQE 229



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>HEM2_MYCLE (P46723) Delta-aminolevulinic acid dehydratase (EC 4.2.1.24)|
           (Porphobilinogen synthase) (ALAD) (ALADH)
          Length = 329

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 16/26 (61%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
 Frame = -1

Query: 305 AGAFDGPFREAV--SMLSKRRTYLQE 234
           + AF GPFREAV  S+   RRTY QE
Sbjct: 204 SSAFYGPFREAVSCSLSGDRRTYQQE 229



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>HEM2_STRCO (P54919) Delta-aminolevulinic acid dehydratase (EC 4.2.1.24)|
           (Porphobilinogen synthase) (ALAD) (ALADH)
          Length = 330

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 15/26 (57%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
 Frame = -1

Query: 305 AGAFDGPFREAV--SMLSKRRTYLQE 234
           A AF GPFREAV  S+   R+TY Q+
Sbjct: 205 ASAFYGPFREAVGSSLKGDRKTYQQD 230


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,397,093
Number of Sequences: 219361
Number of extensions: 947312
Number of successful extensions: 2450
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2448
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3130907202
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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