ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart06e02 |
|---|---|
| Clone Library Name | barley_pub |
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 260 bits (131), Expect = 4e-66 Identities = 220/250 (88%) Strand = Plus / Minus Query: 221 agaagccgttcatctcttgcaggtaggtgcggcgcttgctgagcatggacacggcctccc 280 ||||||||||||||||| |||||||||||||||||||||||||| | |||||||||| Sbjct: 11587593 agaagccgttcatctctagcaggtaggtgcggcgcttgctgagcgcgctgacggcctccc 11587534 Query: 281 tgaatggcccgtcgaaggcgccggccacgaactcgtccagctccttgcgtccgccgccga 340 || | || |||||||| ||| |||| ||||||||||| |||||||| | |||||||||| Sbjct: 11587533 tgtacgggccgtcgaatgcgtcggcgacgaactcgtcgagctccttcctgccgccgccga 11587474 Query: 341 tgccgccggcctcgccgacgggcttgatcaccacgagcgtggcgccctggatcctcgtcc 400 | |||||||||||||||||||||||||| || |||||||||||||||||||||| ||| | Sbjct: 11587473 ttccgccggcctcgccgacgggcttgatgacgacgagcgtggcgccctggatccgcgtgc 11587414 Query: 401 cgtccgacagctccngcatgggcgcgtagcggagcttcatgttgcaggccggcacctgcg 460 |||| || ||||| |||| |||||||| |||||||||||||||||||| || ||||| | Sbjct: 11587413 cgtcggagagctcgagcatcggcgcgtaccggagcttcatgttgcaggcggggacctggg 11587354 Query: 461 tgcggttggc 470 |||||||||| Sbjct: 11587353 tgcggttggc 11587344
>gb|AC119748.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0042L15, from chromosome 3, complete sequence Length = 172475 Score = 260 bits (131), Expect = 4e-66 Identities = 220/250 (88%) Strand = Plus / Minus Query: 221 agaagccgttcatctcttgcaggtaggtgcggcgcttgctgagcatggacacggcctccc 280 ||||||||||||||||| |||||||||||||||||||||||||| | |||||||||| Sbjct: 138165 agaagccgttcatctctagcaggtaggtgcggcgcttgctgagcgcgctgacggcctccc 138106 Query: 281 tgaatggcccgtcgaaggcgccggccacgaactcgtccagctccttgcgtccgccgccga 340 || | || |||||||| ||| |||| ||||||||||| |||||||| | |||||||||| Sbjct: 138105 tgtacgggccgtcgaatgcgtcggcgacgaactcgtcgagctccttcctgccgccgccga 138046 Query: 341 tgccgccggcctcgccgacgggcttgatcaccacgagcgtggcgccctggatcctcgtcc 400 | |||||||||||||||||||||||||| || |||||||||||||||||||||| ||| | Sbjct: 138045 ttccgccggcctcgccgacgggcttgatgacgacgagcgtggcgccctggatccgcgtgc 137986 Query: 401 cgtccgacagctccngcatgggcgcgtagcggagcttcatgttgcaggccggcacctgcg 460 |||| || ||||| |||| |||||||| |||||||||||||||||||| || ||||| | Sbjct: 137985 cgtcggagagctcgagcatcggcgcgtaccggagcttcatgttgcaggcggggacctggg 137926 Query: 461 tgcggttggc 470 |||||||||| Sbjct: 137925 tgcggttggc 137916
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 260 bits (131), Expect = 4e-66 Identities = 220/250 (88%) Strand = Plus / Minus Query: 221 agaagccgttcatctcttgcaggtaggtgcggcgcttgctgagcatggacacggcctccc 280 ||||||||||||||||| |||||||||||||||||||||||||| | |||||||||| Sbjct: 11584356 agaagccgttcatctctagcaggtaggtgcggcgcttgctgagcgcgctgacggcctccc 11584297 Query: 281 tgaatggcccgtcgaaggcgccggccacgaactcgtccagctccttgcgtccgccgccga 340 || | || |||||||| ||| |||| ||||||||||| |||||||| | |||||||||| Sbjct: 11584296 tgtacgggccgtcgaatgcgtcggcgacgaactcgtcgagctccttcctgccgccgccga 11584237 Query: 341 tgccgccggcctcgccgacgggcttgatcaccacgagcgtggcgccctggatcctcgtcc 400 | |||||||||||||||||||||||||| || |||||||||||||||||||||| ||| | Sbjct: 11584236 ttccgccggcctcgccgacgggcttgatgacgacgagcgtggcgccctggatccgcgtgc 11584177 Query: 401 cgtccgacagctccngcatgggcgcgtagcggagcttcatgttgcaggccggcacctgcg 460 |||| || ||||| |||| |||||||| |||||||||||||||||||| || ||||| | Sbjct: 11584176 cgtcggagagctcgagcatcggcgcgtaccggagcttcatgttgcaggcggggacctggg 11584117 Query: 461 tgcggttggc 470 |||||||||| Sbjct: 11584116 tgcggttggc 11584107
>dbj|AK071172.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023081A12, full insert sequence Length = 1508 Score = 260 bits (131), Expect = 4e-66 Identities = 220/250 (88%) Strand = Plus / Minus Query: 221 agaagccgttcatctcttgcaggtaggtgcggcgcttgctgagcatggacacggcctccc 280 ||||||||||||||||| |||||||||||||||||||||||||| | |||||||||| Sbjct: 1239 agaagccgttcatctctagcaggtaggtgcggcgcttgctgagcgcgctgacggcctccc 1180 Query: 281 tgaatggcccgtcgaaggcgccggccacgaactcgtccagctccttgcgtccgccgccga 340 || | || |||||||| ||| |||| ||||||||||| |||||||| | |||||||||| Sbjct: 1179 tgtacgggccgtcgaatgcgtcggcgacgaactcgtcgagctccttcctgccgccgccga 1120 Query: 341 tgccgccggcctcgccgacgggcttgatcaccacgagcgtggcgccctggatcctcgtcc 400 | |||||||||||||||||||||||||| || |||||||||||||||||||||| ||| | Sbjct: 1119 ttccgccggcctcgccgacgggcttgatgacgacgagcgtggcgccctggatccgcgtgc 1060 Query: 401 cgtccgacagctccngcatgggcgcgtagcggagcttcatgttgcaggccggcacctgcg 460 |||| || ||||| |||| |||||||| |||||||||||||||||||| || ||||| | Sbjct: 1059 cgtcggagagctcgagcatcggcgcgtaccggagcttcatgttgcaggcggggacctggg 1000 Query: 461 tgcggttggc 470 |||||||||| Sbjct: 999 tgcggttggc 990
>gb|AY111228.1| Zea mays CL9792_1 mRNA sequence Length = 632 Score = 50.1 bits (25), Expect = 0.007 Identities = 28/29 (96%) Strand = Plus / Plus Query: 433 agcttcatgttgcaggccggcacctgcgt 461 |||||||||||||| |||||||||||||| Sbjct: 388 agcttcatgttgcatgccggcacctgcgt 416
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Minus Query: 332 cgccgccgatgccgccggcctcgccg 357 |||||||||||||||||||| ||||| Sbjct: 1213885 cgccgccgatgccgccggccccgccg 1213860
>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome Length = 3814139 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Minus Query: 362 gcttgatcaccacgagcgtggcgccc 387 |||||||||||| ||||||||||||| Sbjct: 1309986 gcttgatcaccaggagcgtggcgccc 1309961 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 164 tggtggccattgccatcgcc 183 |||||||||||||||||||| Sbjct: 3074758 tggtggccattgccatcgcc 3074739
>emb|AL662788.7| Human DNA sequence from clone RP11-778P13 on chromosome 9 Contains part of the C9orf93 gene for chromosome 9 open reading frame 93, complete sequence Length = 106363 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Minus Query: 8 tctcgtatcacttcatttcattcatc 33 |||| ||||||||||||||||||||| Sbjct: 11285 tctcttatcacttcatttcattcatc 11260
>emb|BX248337.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 4/14 Length = 327650 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Minus Query: 332 cgccgccgatgccgccggcctcgccg 357 |||||||||||||||||||| ||||| Sbjct: 228065 cgccgccgatgccgccggccccgccg 228040
>gb|AC010885.8| Homo sapiens BAC clone RP11-368K23 from 2, complete sequence Length = 177385 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 64 gaaatgatggtggcgattacca 85 |||||||||||||||||||||| Sbjct: 167946 gaaatgatggtggcgattacca 167967
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 369 caccacgagcgtggcgccctg 389 ||||||||||||||||||||| Sbjct: 2182722 caccacgagcgtggcgccctg 2182742
>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence Length = 3363523 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 336 gccgatgccgccggcctcgcc 356 ||||||||||||||||||||| Sbjct: 805543 gccgatgccgccggcctcgcc 805563
>gb|AC022887.10| Homo sapiens chromosome 8, clone RP11-480L14, complete sequence Length = 156238 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 8 tctcgtatcacttcatttcattcat 32 |||| |||||||||||||||||||| Sbjct: 39652 tctcttatcacttcatttcattcat 39628
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 331 ccgccgccgatgccgccggcctcgccgac 359 ||||||||||||| |||||| |||||||| Sbjct: 19834016 ccgccgccgatgcggccggcttcgccgac 19834044
>dbj|AP005735.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBb0034B12 Length = 124083 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 331 ccgccgccgatgccgccggcctcgccgac 359 ||||||||||||| |||||| |||||||| Sbjct: 58456 ccgccgccgatgcggccggcttcgccgac 58484
>dbj|AK072458.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023121E21, full insert sequence Length = 4525 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 331 ccgccgccgatgccgccggcctcgccgac 359 ||||||||||||| |||||| |||||||| Sbjct: 3644 ccgccgccgatgcggccggcttcgccgac 3616
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 331 ccgccgccgatgccgccggcc 351 ||||||||||||||||||||| Sbjct: 3317402 ccgccgccgatgccgccggcc 3317382
>emb|AL160237.4|CNS01RH1 Human chromosome 14 DNA sequence BAC R-388E23 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 206533 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 8 tctcgtatcacttcatttcattcat 32 |||||| |||||||||||||||||| Sbjct: 120539 tctcgtctcacttcatttcattcat 120515
>ref|XM_475591.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 324 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 331 ccgccgccgatgccgccggc 350 |||||||||||||||||||| Sbjct: 107 ccgccgccgatgccgccggc 88
>gb|AY855102.1| Nephila clavipes tubuliform spidroin mRNA, partial cds Length = 1779 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 336 gccgatgccgccggcctcgc 355 |||||||||||||||||||| Sbjct: 64 gccgatgccgccggcctcgc 83
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 336 gccgatgccgccggcctcgccgac 359 ||||||||||||| |||||||||| Sbjct: 476114 gccgatgccgccgccctcgccgac 476091
>ref|XM_420411.1| PREDICTED: Gallus gallus similar to mastermind-like 3; CAG repeat containing (glia-derived nexin I alpha); expanded repeat domain, CAG/CTG 3; CAG repeat domain; trinucleotide repeat containing 3 (LOC422445), mRNA Length = 8301 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 88 atgcccaggcagcagcgaagaaat 111 ||||||||||||||| |||||||| Sbjct: 3364 atgcccaggcagcagagaagaaat 3387
>gb|AC104277.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1264_A04, complete sequence Length = 133271 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 331 ccgccgccgatgccgccggc 350 |||||||||||||||||||| Sbjct: 52550 ccgccgccgatgccgccggc 52569
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 333 gccgccgatgccgccggcctcgccgacg 360 ||||||||||||||| ||| |||||||| Sbjct: 3756136 gccgccgatgccgcccgccgcgccgacg 3756109
>gb|AF484556.1| Streptomyces atroolivaceus leinamycin biosynthetic gene cluster, complete sequence Length = 135638 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 335 cgccgatgccgccggcctcgccga 358 ||||||||||||||||| |||||| Sbjct: 68023 cgccgatgccgccggccgcgccga 68000
>gb|AC115357.5| Mus musculus BAC clone RP23-81J4 from chromosome 14, complete sequence Length = 233685 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 14 atcacttcatttcattcatc 33 |||||||||||||||||||| Sbjct: 83843 atcacttcatttcattcatc 83824
>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome Length = 2462499 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 344 cgccggcctcgccgacgggc 363 |||||||||||||||||||| Sbjct: 1766994 cgccggcctcgccgacgggc 1766975
>ref|XM_502117.1| Yarrowia lipolytica CLIB122, YALI0C22022g predicted mRNA Length = 2025 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 atgatggtggcgattaccag 86 |||||||||||||||||||| Sbjct: 196 atgatggtggcgattaccag 215
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 331 ccgccgccgatgccgccggcctcg 354 ||||||||||| |||||||||||| Sbjct: 3624814 ccgccgccgattccgccggcctcg 3624791
>emb|AL353575.24| Human DNA sequence from clone RP3-433O4 on chromosome X, complete sequence Length = 70581 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 tatcacttcatttcattcat 32 |||||||||||||||||||| Sbjct: 5459 tatcacttcatttcattcat 5478
>emb|BX842577.1| Mycobacterium tuberculosis H37Rv complete genome; segment 6/13 Length = 347496 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 334 ccgccgatgccgccggcctcgccg 357 |||||||||||||||||| ||||| Sbjct: 313961 ccgccgatgccgccggccccgccg 313984
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 333 gccgccgatgccgccggcctcgccgacg 360 ||||||||||||||| ||| |||||||| Sbjct: 3496502 gccgccgatgccgcccgccgcgccgacg 3496475
>emb|BX248340.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 7/14 Length = 291050 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 334 ccgccgatgccgccggcctcgccg 357 |||||||||||||||||| ||||| Sbjct: 121673 ccgccgatgccgccggccccgccg 121696
>emb|AL939127.1|SCO939127 Streptomyces coelicolor A3(2) complete genome; segment 24/29 Length = 290850 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 331 ccgccgccgatgccgccggcctcg 354 |||||||||| ||||||||||||| Sbjct: 36161 ccgccgccgacgccgccggcctcg 36138
>emb|X70687.1|MBHRD M.bovis highly repetitive DNA sequence Length = 2365 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 334 ccgccgatgccgccggcctcgccg 357 |||||||||||||||||| ||||| Sbjct: 463 ccgccgatgccgccggccccgccg 486
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 332 cgccgccgatgccgccggcc 351 |||||||||||||||||||| Sbjct: 2064068 cgccgccgatgccgccggcc 2064087
>gb|AE012376.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 284 of 460 of the complete genome Length = 10101 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 336 gccgatgccgccggcctcgccgac 359 |||||||||||||||| ||||||| Sbjct: 9410 gccgatgccgccggccacgccgac 9387
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 333 gccgccgatgccgccggcctcgcc 356 |||||||||||||| ||||||||| Sbjct: 259478 gccgccgatgccgcgggcctcgcc 259501
>gb|AC097522.4| Homo sapiens BAC clone RP11-588F10 from 4, complete sequence Length = 207883 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 tatcacttcatttcattcat 32 |||||||||||||||||||| Sbjct: 151228 tatcacttcatttcattcat 151247
>emb|CR386827.1| Gallus gallus finished cDNA, clone ChEST37f3 Length = 917 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 88 atgcccaggcagcagcgaagaaat 111 ||||||||||||||| |||||||| Sbjct: 601 atgcccaggcagcagagaagaaat 624
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 336 gccgatgccgccggcctcgccgac 359 |||||||||||||||| ||||||| Sbjct: 1772508 gccgatgccgccggccacgccgac 1772531
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 332 cgccgccgatgccgccggcc 351 |||||||||||||||||||| Sbjct: 2264720 cgccgccgatgccgccggcc 2264701
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 341 tgccgccggcctcgccgacg 360 |||||||||||||||||||| Sbjct: 25603417 tgccgccggcctcgccgacg 25603398
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 337 ccgatgccgccggcctcgccgacg 360 ||||||||||| |||||||||||| Sbjct: 23777405 ccgatgccgcccgcctcgccgacg 23777382
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 331 ccgccgccgatgccgccggc 350 |||||||||||||||||||| Sbjct: 2376950 ccgccgccgatgccgccggc 2376969
>gb|AC116628.4| Homo sapiens BAC clone RP11-369F24 from 2, complete sequence Length = 107755 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 8 tctcgtatcacttcatttcattca 31 |||||| ||||||||||||||||| Sbjct: 15505 tctcgtctcacttcatttcattca 15482
>gb|AC132153.2| Homo sapiens BAC clone RP11-111G13 from 2, complete sequence Length = 154924 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 8 tctcgtatcacttcatttcattca 31 |||||| ||||||||||||||||| Sbjct: 28430 tctcgtctcacttcatttcattca 28453
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 343 ccgccggcctcgccgacggg 362 |||||||||||||||||||| Sbjct: 702031 ccgccggcctcgccgacggg 702050
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 304 gccacgaactcgtccagctc 323 |||||||||||||||||||| Sbjct: 2652889 gccacgaactcgtccagctc 2652870
>dbj|AP005446.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0029C06 Length = 156500 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 337 ccgatgccgccggcctcgccgacg 360 ||||||||||| |||||||||||| Sbjct: 125481 ccgatgccgcccgcctcgccgacg 125458
>dbj|AP004279.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0556B08 Length = 136775 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 337 ccgatgccgccggcctcgccgacg 360 ||||||||||| |||||||||||| Sbjct: 17070 ccgatgccgcccgcctcgccgacg 17047
>dbj|AP004761.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0686C03 Length = 164529 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 341 tgccgccggcctcgccgacg 360 |||||||||||||||||||| Sbjct: 90108 tgccgccggcctcgccgacg 90089
>emb|AJ001438.1|SS95BASAL Spermatozopsis similis mRNA for 95 kD basal apparatus-protein Length = 3113 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 331 ccgccgccgatgccgccggc 350 |||||||||||||||||||| Sbjct: 2403 ccgccgccgatgccgccggc 2384
>dbj|AK071647.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023107H06, full insert sequence Length = 660 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 331 ccgccgccgatgccgccggc 350 |||||||||||||||||||| Sbjct: 237 ccgccgccgatgccgccggc 218
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 329 gtccgccgccgatgccgccg 348 |||||||||||||||||||| Sbjct: 3599465 gtccgccgccgatgccgccg 3599446
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 333 gccgccgatgccgccggcctcgccgacg 360 ||||||||||||||| ||| |||||||| Sbjct: 1369934 gccgccgatgccgcccgccgcgccgacg 1369961
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 168 ggccattgccatcgccatag 187 |||||||||||||||||||| Sbjct: 2021814 ggccattgccatcgccatag 2021795
>emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB122 of Yarrowia lipolytica Length = 3272609 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 67 atgatggtggcgattaccag 86 |||||||||||||||||||| Sbjct: 2945604 atgatggtggcgattaccag 2945585
>gb|AC107768.25| Mus musculus chromosome 18, clone RP23-144B22, complete sequence Length = 217847 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 130 ccgacagaagagagcaatca 149 |||||||||||||||||||| Sbjct: 145391 ccgacagaagagagcaatca 145410
>gb|AC105262.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1489_G03, complete sequence Length = 107870 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 331 ccgccgccgatgccgccggc 350 |||||||||||||||||||| Sbjct: 104865 ccgccgccgatgccgccggc 104884 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,972,927 Number of Sequences: 3902068 Number of extensions: 2972927 Number of successful extensions: 80121 Number of sequences better than 10.0: 60 Number of HSP's better than 10.0 without gapping: 60 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 77678 Number of HSP's gapped (non-prelim): 2439 length of query: 473 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 451 effective length of database: 17,147,199,772 effective search space: 7733387097172 effective search space used: 7733387097172 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
