ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbart06d09 |
|---|---|
| Clone Library Name | barley_pub |
>PSD13_HUMAN (Q9UNM6) 26S proteasome non-ATPase regulatory subunit 13 (26S| proteasome regulatory subunit S11) (26S proteasome regulatory subunit p40.5) Length = 376 Score = 91.3 bits (225), Expect = 1e-18 Identities = 42/101 (41%), Positives = 67/101 (66%) Frame = -3 Query: 468 LCLMEIIFSRASQDRTIPLSTIAEQTRLSVEDVEYLLMKSLSAHLIEGIIDGVDGTVHVS 289 LCLME+ F+R + R + IA+ +++V +VE L+MK+LS L++G ID VD VH++ Sbjct: 275 LCLMEMTFTRPANHRQLTFEEIAKSAKITVNEVELLVMKALSVGLVKGSIDEVDKRVHMT 334 Query: 288 WAQPRVLGIDQVKSLRDRLDTWVGKVHTTLLSVEAETPDLV 166 W QPRVL + Q+K ++DRL+ W V + + VE + D++ Sbjct: 335 WVQPRVLDLQQIKGMKDRLEFWCTDVKSMEMLVEHQAHDIL 375
>PSD13_CHICK (P84169) 26S proteasome non-ATPase regulatory subunit 13 (26S| proteasome regulatory subunit S11) (26S proteasome regulatory subunit p40.5) Length = 376 Score = 91.3 bits (225), Expect = 1e-18 Identities = 42/101 (41%), Positives = 67/101 (66%) Frame = -3 Query: 468 LCLMEIIFSRASQDRTIPLSTIAEQTRLSVEDVEYLLMKSLSAHLIEGIIDGVDGTVHVS 289 LCLME+ F+R + R + IA+ +++V +VE L+MK+LS L++G ID VD VH++ Sbjct: 275 LCLMEMTFTRPANHRQLTFEEIAKSAKVTVNEVELLVMKALSVGLVKGSIDEVDKRVHMT 334 Query: 288 WAQPRVLGIDQVKSLRDRLDTWVGKVHTTLLSVEAETPDLV 166 W QPRVL + Q+K ++DRL+ W V + + VE + D++ Sbjct: 335 WVQPRVLDLQQIKGMKDRLEFWCTDVRSMEMLVEHQAHDIL 375
>PSD13_BOVIN (Q5E964) 26S proteasome non-ATPase regulatory subunit 13 (26S| proteasome regulatory subunit S11) (26S proteasome regulatory subunit p40.5) Length = 376 Score = 90.9 bits (224), Expect = 1e-18 Identities = 42/101 (41%), Positives = 66/101 (65%) Frame = -3 Query: 468 LCLMEIIFSRASQDRTIPLSTIAEQTRLSVEDVEYLLMKSLSAHLIEGIIDGVDGTVHVS 289 LCLME+ F+R + R + IA +++V +VE L+MK+LS L++G ID VD VH++ Sbjct: 275 LCLMEMTFTRPANHRQLTFEEIARSAKITVNEVELLVMKALSVGLVKGSIDEVDKRVHMT 334 Query: 288 WAQPRVLGIDQVKSLRDRLDTWVGKVHTTLLSVEAETPDLV 166 W QPRVL + Q+K ++DRL+ W V + + VE + D++ Sbjct: 335 WVQPRVLDLQQIKGMKDRLEFWCTDVKSMEMLVEHQAHDIL 375
>PSD13_MOUSE (Q9WVJ2) 26S proteasome non-ATPase regulatory subunit 13 (26S| proteasome regulatory subunit S11) (26S proteasome regulatory subunit p40.5) Length = 376 Score = 90.5 bits (223), Expect = 2e-18 Identities = 42/101 (41%), Positives = 65/101 (64%) Frame = -3 Query: 468 LCLMEIIFSRASQDRTIPLSTIAEQTRLSVEDVEYLLMKSLSAHLIEGIIDGVDGTVHVS 289 LCLME+ F+R + R + IA+ +++V VE L+MK+LS L+ G ID VD VH++ Sbjct: 275 LCLMEMTFTRPANHRQLTFEEIAKSAKITVNKVELLVMKALSVGLVRGSIDEVDKRVHMT 334 Query: 288 WAQPRVLGIDQVKSLRDRLDTWVGKVHTTLLSVEAETPDLV 166 W QPRVL + Q+K ++DRL+ W V + + VE + D++ Sbjct: 335 WVQPRVLDLQQIKGMKDRLELWCTDVKSMEMLVEHQAQDIL 375
>RPN9_SCHPO (Q9US13) Probable 26S proteasome regulatory subunit rpn9| Length = 381 Score = 63.9 bits (154), Expect = 2e-10 Identities = 32/82 (39%), Positives = 47/82 (57%) Frame = -3 Query: 468 LCLMEIIFSRASQDRTIPLSTIAEQTRLSVEDVEYLLMKSLSAHLIEGIIDGVDGTVHVS 289 + L+E++F RT+ TIA TR+ +VE L+M++LS LI G+ID V V +S Sbjct: 280 MALIELVFQLPPNQRTLTFDTIARATRIPSNEVELLIMRALSVGLITGVIDEVTQIVTIS 339 Query: 288 WAQPRVLGIDQVKSLRDRLDTW 223 Q R+L Q+ S+ RL W Sbjct: 340 SVQSRILNHSQIASMESRLREW 361
>RPN9_YEAST (Q04062) 26S proteasome regulatory subunit RPN9 (Proteasome| non-ATPase subunit 7) Length = 393 Score = 63.2 bits (152), Expect = 3e-10 Identities = 33/96 (34%), Positives = 59/96 (61%), Gaps = 1/96 (1%) Frame = -3 Query: 468 LCLMEIIFSRASQD-RTIPLSTIAEQTRLSVEDVEYLLMKSLSAHLIEGIIDGVDGTVHV 292 +CLM +I + ++ R + I++ T L ++VE+L+M+++S L++G ID V+ V + Sbjct: 291 ICLMTLIETVFVKNIRMLSFEDISKATHLPKDNVEHLVMRAISLGLLKGSIDQVNELVTI 350 Query: 291 SWAQPRVLGIDQVKSLRDRLDTWVGKVHTTLLSVEA 184 SW QPR++ DQ+ ++DRL W +V +EA Sbjct: 351 SWVQPRIISGDQITKMKDRLVEWNDQVEKLGKKMEA 386
>CSN7A_SCHPO (Q9UUJ7) COP9 signalosome complex subunit 7A| Length = 205 Score = 43.9 bits (102), Expect = 2e-04 Identities = 21/71 (29%), Positives = 39/71 (54%) Frame = -3 Query: 372 VEYLLMKSLSAHLIEGIIDGVDGTVHVSWAQPRVLGIDQVKSLRDRLDTWVGKVHTTLLS 193 VEY +M+++ ++ G I+ T+HVSWA R L ++ ++ LD ++ + L Sbjct: 104 VEYYIMQAMMNQILVGKINAKTQTLHVSWALERFLDSKRIDEMKYSLDRFIERCSNILFQ 163 Query: 192 VEAETPDLVAS 160 ++A TP + S Sbjct: 164 LDAGTPSVSKS 174
>ISPH_FUSNN (Q8RI52) 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC| 1.17.1.2) Length = 827 Score = 31.2 bits (69), Expect = 1.4 Identities = 23/89 (25%), Positives = 45/89 (50%), Gaps = 3/89 (3%) Frame = -3 Query: 417 PLSTIAEQTRLSVEDVEYLLMKSLSAHLIEGIIDGVDGTVHV---SWAQPRVLGIDQVKS 247 P +T+A + ++ +++E ++ K L I GV+G VH+ SW + +V D VK Sbjct: 551 PWATVANEFKVD-DEIEGIVTKVLPYGAFVEIKPGVEGLVHISDFSWTKKKVNVADYVKE 609 Query: 246 LRDRLDTWVGKVHTTLLSVEAETPDLVAS 160 R+++ + +H ++ LVA+ Sbjct: 610 -REKIKVRITDLHPEDRKLKLGIKQLVAN 637
>Y309_MYCGE (P47551) Hypothetical lipoprotein MG309 precursor| Length = 1225 Score = 30.8 bits (68), Expect = 1.8 Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 4/85 (4%) Frame = +2 Query: 149 KEHQEATRSGVSASTDSKVVCTFPTQVSSRSRRDFTWSIPRT----LGCAHETWTVPSTP 316 K+ +S S+ V+ V+S++ +DFT + G + WT TP Sbjct: 865 KDRNNTASQAMSVSSSKSVLVKMANNVASQTNQDFTKQEQQNPNYVFGSSAYNWTNNKTP 924 Query: 317 SIMPSIR*AERLFISRYSTSSTESL 391 ++ + L+ ++ + SS+ SL Sbjct: 925 TVNSAANDISSLYYTKNNGSSSTSL 949
>WSC2_YEAST (P53832) Cell wall integrity and stress response component 2| precursor Length = 503 Score = 30.4 bits (67), Expect = 2.4 Identities = 29/102 (28%), Positives = 40/102 (39%), Gaps = 4/102 (3%) Frame = +2 Query: 95 SNSTLALCKVTDTVQQGTKEHQEATRSGVSASTDSKVVCTFPTQVSSRSRRDF----TWS 262 S+ST K + + T AT S S+ST S + T SS S T S Sbjct: 138 SSSTSVSSKTSTKLDTKTSTSSSATHSSSSSSTTSTTTSSSETTTSSSSSSSSSSTSTTS 197 Query: 263 IPRTLGCAHETWTVPSTPSIMPSIR*AERLFISRYSTSSTES 388 T T + PST S S + ++ ++SST S Sbjct: 198 TTSTTSSTTSTSSSPSTTSSSTSASSSSETSSTQATSSSTTS 239
>CPT2_MACFA (Q60HG9) Carnitine O-palmitoyltransferase II, mitochondrial| precursor (EC 2.3.1.21) (CPT II) Length = 658 Score = 30.4 bits (67), Expect = 2.4 Identities = 16/35 (45%), Positives = 19/35 (54%) Frame = +3 Query: 210 APSRPRCPAGHAGTSPGQFQGPSVAPTKHGQSRRP 314 APSRP AG+ PGQ+ S+ PT H Q P Sbjct: 20 APSRPLS----AGSGPGQYLQRSIVPTMHYQDSLP 50
>CPT2_HUMAN (P23786) Carnitine O-palmitoyltransferase II, mitochondrial| precursor (EC 2.3.1.21) (CPT II) Length = 658 Score = 30.4 bits (67), Expect = 2.4 Identities = 16/35 (45%), Positives = 19/35 (54%) Frame = +3 Query: 210 APSRPRCPAGHAGTSPGQFQGPSVAPTKHGQSRRP 314 APSRP AG+ PGQ+ S+ PT H Q P Sbjct: 20 APSRPLS----AGSGPGQYLQRSIVPTMHYQDSLP 50
>PRDM6_HUMAN (Q9NQX0) PR domain zinc finger protein 6 (PR domain-containing| protein 6) (Fragment) Length = 608 Score = 30.0 bits (66), Expect = 3.1 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 6/49 (12%) Frame = +3 Query: 204 WCAPSRPRCPAG---HAGT-SPGQFQGPSVAPT--KHGQSRRPHQLCLQ 332 +CA +P CPAG GT PG+ G + PT + G RPH L+ Sbjct: 21 FCAVVKPTCPAGKLPERGTKEPGRGSGQAQQPTAVESGAQVRPHSRALR 69
>MN1_HUMAN (Q10571) Probable tumor suppressor protein MN1| Length = 1319 Score = 30.0 bits (66), Expect = 3.1 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%) Frame = +3 Query: 207 CAPSRPRCPAGHAGTSPGQFQ-GPSVAPTKHGQSRRP-HQL 323 C P+ PR G AGT G Q G + P++H Q P H+L Sbjct: 373 CPPALPRPQQGEAGTPSGGLQDGGPMLPSQHAQFEYPIHRL 413
>SF3A2_MOUSE (Q62203) Splicing factor 3A subunit 2 (Spliceosome-associated| protein 62) (SAP 62) (SF3a66) Length = 475 Score = 29.6 bits (65), Expect = 4.1 Identities = 12/18 (66%), Positives = 13/18 (72%) Frame = +1 Query: 202 SGVHLPDPGVQPVTQGLH 255 SGVH P PGV P T G+H Sbjct: 310 SGVHPPAPGVHPPTPGVH 327
>ATP5L_MOUSE (Q9CPQ8) ATP synthase subunit g, mitochondrial (EC 3.6.3.14)| (ATPase subunit g) Length = 103 Score = 28.9 bits (63), Expect = 6.9 Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 2/78 (2%) Frame = +2 Query: 197 SKVVCTFPTQVSSRSRRDFTWSIPRTLGCAH--ETWTVPSTPSIMPSIR*AERLFISRYS 370 +K + F + S T+S PR H + VP TP+ +P+ + + I Sbjct: 2 AKFIRNFAEKAPSMVAAAVTYSKPRLATFWHYAKVELVPPTPAEIPTAIQSVKKIIQSAK 61 Query: 371 TSSTESLVCSAIVLNGIV 424 T S + L VLNG+V Sbjct: 62 TGSFKHLTVKEAVLNGLV 79
>CXAR_BRARE (Q90Y50) Coxsackievirus and adenovirus receptor homolog precursor| Length = 372 Score = 28.9 bits (63), Expect = 6.9 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = +3 Query: 156 IKKLPGRASRLRQIAKWCAPSRPRCPA 236 IKK+PG ASR + PS+P+C A Sbjct: 126 IKKVPGIASRKYLLTVMVRPSKPKCSA 152
>SF3A2_HUMAN (Q15428) Splicing factor 3A subunit 2 (Spliceosome-associated| protein 62) (SAP 62) (SF3a66) Length = 464 Score = 28.9 bits (63), Expect = 6.9 Identities = 13/28 (46%), Positives = 14/28 (50%) Frame = +1 Query: 205 GVHLPDPGVQPVTQGLHLVNSKDPRLRP 288 GVH PGV P G+H P LRP Sbjct: 420 GVHPQPPGVHPSNPGVHPPTPMPPMLRP 447 Score = 28.5 bits (62), Expect = 9.1 Identities = 11/17 (64%), Positives = 12/17 (70%) Frame = +1 Query: 205 GVHLPDPGVQPVTQGLH 255 GVH P PGV P T G+H Sbjct: 314 GVHPPAPGVHPPTSGVH 330
>ISPH_ZYMMO (Q5NP61) 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC| 1.17.1.2) Length = 340 Score = 28.5 bits (62), Expect = 9.1 Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 2/92 (2%) Frame = -3 Query: 429 DRTIPL-STIAEQTRLSVEDVEYLLMKSLSAHL-IEGIIDGVDGTVHVSWAQPRVLGIDQ 256 D T PL + + Q R + L++ + H IEG + +DG VH+ V +Q Sbjct: 94 DATCPLVNKVHAQGRRYLSHGRTLILIGHAGHPEIEGTLGQIDGPVHL------VGSAEQ 147 Query: 255 VKSLRDRLDTWVGKVHTTLLSVEAETPDLVAS 160 V SL DT V + T LSV+ +T ++A+ Sbjct: 148 VDSLDIPSDTPVAFITQTTLSVD-DTRSVIAA 178
>GLPK_ANASP (Q8YW05) Glycerol kinase (EC 2.7.1.30) (ATP:glycerol| 3-phosphotransferase) (Glycerokinase) (GK) Length = 500 Score = 28.5 bits (62), Expect = 9.1 Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 6/47 (12%) Frame = -3 Query: 324 IIDGVDGTVHVSWAQPRVLGIDQVKSLRDRLDTWV------GKVHTT 202 ++D + W + G+D L +DTW+ GKVH T Sbjct: 134 VVDAYFSATKLRWLLDYITGVDLKNVLAGTIDTWILWKLTGGKVHAT 180
>CYAA_AERHY (Q59119) Adenylate cyclase (EC 4.6.1.1) (ATP pyrophosphate-lyase)| (Adenylyl cyclase) Length = 843 Score = 28.5 bits (62), Expect = 9.1 Identities = 16/60 (26%), Positives = 30/60 (50%) Frame = -3 Query: 333 IEGIIDGVDGTVHVSWAQPRVLGIDQVKSLRDRLDTWVGKVHTTLLSVEAETPDLVAS*C 154 +E ++ VD SW++ R L +++ D L T +GK+H +A P+++ C Sbjct: 589 LECLVGSVDLVYRNSWSEIRTLHFQGDEAVVDALTTILGKMHQ-----DAAAPEMIEVFC 643
>SPAG5_HUMAN (Q96R06) Sperm-associated antigen 5 (Astrin) (Mitotic| spindle-associated protein p126) (MAP126) (Deepest) Length = 1193 Score = 28.5 bits (62), Expect = 9.1 Identities = 14/39 (35%), Positives = 20/39 (51%) Frame = +2 Query: 281 CAHETWTVPSTPSIMPSIR*AERLFISRYSTSSTESLVC 397 C+ TW PS P + L +++STS TE L+C Sbjct: 382 CSVGTWFTPSAPQEKSTNTSQTGLVGTKHSTSETEQLLC 420
>GLMS_OCEIH (Q8ETM5) Glucosamine--fructose-6-phosphate aminotransferase| [isomerizing] (EC 2.6.1.16) (Hexosephosphate aminotransferase) (D-fructose-6-phosphate amidotransferase) (GFAT) (L-glutamine-D-fructose-6-phosphate amidotransferase) (Glucosamine-6-ph Length = 599 Score = 28.5 bits (62), Expect = 9.1 Identities = 15/58 (25%), Positives = 25/58 (43%) Frame = +2 Query: 152 EHQEATRSGVSASTDSKVVCTFPTQVSSRSRRDFTWSIPRTLGCAHETWTVPSTPSIM 325 E++ +G++ D+ V T + R D +I T+G H W PS+M Sbjct: 24 EYRGYDSAGIATLNDNGVHVTKVKGRIATLREDVDTTIDSTMGIGHTRWATHGVPSVM 81
>DNAK_BLOPB (Q493S7) Chaperone protein dnaK (Heat shock protein 70) (Heat shock| 70 kDa protein) (HSP70) Length = 637 Score = 28.5 bits (62), Expect = 9.1 Identities = 12/42 (28%), Positives = 28/42 (66%) Frame = +2 Query: 68 LQPKNQNQISNSTLALCKVTDTVQQGTKEHQEATRSGVSAST 193 ++ +++N+I + +L KV+ + + +++HQE ++S S ST Sbjct: 577 IKKEDKNEIESKIQSLIKVSGKLLEASQKHQEQSKSQSSNST 618
>PKD1_HUMAN (P98161) Polycystin-1 precursor (Autosomal dominant polycystic kidney| disease protein 1) Length = 4303 Score = 28.5 bits (62), Expect = 9.1 Identities = 18/61 (29%), Positives = 27/61 (44%) Frame = +3 Query: 150 KNIKKLPGRASRLRQIAKWCAPSRPRCPAGHAGTSPGQFQGPSVAPTKHGQSRRPHQLCL 329 + ++ LP R+SR +++ P A H TS Q G SV+ + G P L Sbjct: 4156 EGMEPLPSRSSRGSKVSPDVPPPSAGSDASHPSTSSSQLDGLSVSLGRLGTRCEPEPSRL 4215 Query: 330 Q 332 Q Sbjct: 4216 Q 4216 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 72,296,508 Number of Sequences: 219361 Number of extensions: 1557632 Number of successful extensions: 4273 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 4099 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4270 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3072927439 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
