ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart06d09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY103805.1| Zea mays PCO119314 mRNA sequence 78 3e-11
2ref|NM_193765.1| Oryza sativa (japonica cultivar-group), predic... 76 1e-10
3dbj|AK069825.1| Oryza sativa (japonica cultivar-group) cDNA clon... 76 1e-10
4dbj|AB070261.1| Oryza sativa (japonica cultivar-group) OsRPN9a m... 76 1e-10
5dbj|AK061942.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 3e-05
6dbj|AK101240.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 3e-05
7dbj|AK068605.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 3e-05
8dbj|AK064850.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 3e-05
9dbj|AB070262.1| Oryza sativa (japonica cultivar-group) OsRPN9b m... 58 3e-05
10ref|NM_203160.1| Arabidopsis thaliana unknown protein AT5G45620 ... 48 0.026
11ref|NM_123930.3| Arabidopsis thaliana unknown protein AT5G45620 ... 48 0.026
12gb|AY230841.1| Arabidopsis thaliana 26S proteasome subunit RPN9a... 48 0.026
13gb|AY093136.1| Arabidopsis thaliana 26S proteasome subunit-like ... 48 0.026
14emb|BX830748.1|CNS09ZGZ Arabidopsis thaliana Full-length cDNA Co... 48 0.026
15gb|BT003384.1| Arabidopsis thaliana 26S proteasome subunit-like ... 48 0.026
16dbj|AB012245.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 48 0.026
17emb|BX832332.1|CNS09ZTC Arabidopsis thaliana Full-length cDNA Co... 46 0.10
18emb|AL353739.4| Human DNA sequence from clone RP11-19D15 on chro... 44 0.41
19dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 44 0.41
20ref|XM_638838.1| Dictyostelium discoideum hypothetical protein (... 42 1.6
21gb|DQ333810.1| Liua shihi mitochondrion, complete genome 42 1.6
22gb|AC122866.4| Mus musculus BAC clone RP23-145J18 from 8, comple... 42 1.6
23gb|AC165355.3| Mus musculus BAC clone RP23-129P10 from chromosom... 42 1.6
24emb|CR931736.1| Medicago truncatula chromosome 5 clone mte1-84f2... 42 1.6
25gb|AC105132.4| Homo sapiens chromosome 15, clone RP11-457H6, com... 42 1.6
26gb|AY593192.1| Liua shihi NADH dehydrogenase subunit 5 (ND5) gen... 42 1.6
27gb|AC116986.2| Dictyostelium discoideum chromosome 2 map 2234041... 42 1.6
28dbj|BS000038.1| Pan troglodytes chromosome 22 clone:PTB-005J02, ... 42 1.6
29gb|AC107650.19| Mus musculus chromosome 6, clone RP23-133I9, com... 42 1.6
30dbj|AP001671.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 42 1.6
31dbj|AP000404.2| Homo sapiens genomic DNA, chromosome 21q21.1-q21... 42 1.6
32gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 6.3
33gb|AC104111.2| Homo sapiens chromosome 5 clone RP11-176O14, comp... 40 6.3
34gb|AC022360.23| Homo sapiens 8 BAC RP11-58O3 (Roswell Park Cance... 40 6.3
35gb|AC025765.6| Homo sapiens chromosome 5 clone CTB-57H20, comple... 40 6.3
36gb|AC134241.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.3
37gb|AC135158.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.3
38gb|AC016925.15|AC016925 Homo sapiens X BAC RP11-434J4 (Roswell P... 40 6.3
39dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
40dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
41gb|AC009916.5|AC009916 Drosophila melanogaster, chromosome 3R, r... 40 6.3
42gb|AC017040.7| Homo sapiens BAC clone RP11-319B20 from 2, comple... 40 6.3
43gb|AC016712.6| Homo sapiens BAC clone RP11-266F17 from 2, comple... 40 6.3
44gb|AC093528.3| Homo sapiens chromosome 5 clone RP11-297K24, comp... 40 6.3
45gb|AC078929.27| Homo sapiens 12 BAC RP11-797M17 (Roswell Park Ca... 40 6.3
46dbj|AP003213.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
47dbj|AP003077.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
48gb|AC008407.4|AC008407 Homo sapiens chromosome 5 clone CTC-278A2... 40 6.3
49gb|AE003748.3| Drosophila melanogaster chromosome 3R, section 86... 40 6.3
50dbj|AP000808.6| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 6.3
51dbj|AP003732.4| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 6.3
52emb|AL121944.14|HSDJ313I6 Human DNA sequence from clone RP1-313I... 40 6.3
53dbj|AP006375.1| Lotus japonicus genomic DNA, chromosome 4, clone... 40 6.3 
>gb|AY103805.1| Zea mays PCO119314 mRNA sequence
          Length = 1791

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 78/91 (85%)
 Strand = Plus / Minus

                                                                        
Query: 285  cccacgaaacatggacagtcccgtcgaccccatcaattatgccttcaataagatgagcag 344
            ||||||||||||| || || | ||| ||  |||||||||| || |||||||||||| | |
Sbjct: 1264 cccacgaaacatgaactgtactgtccacttcatcaattattccctcaataagatgaaccg 1205

                                           
Query: 345  agaggctcttcattagtagatactccacatc 375
            ||||||||||||| || ||||||||||||||
Sbjct: 1204 agaggctcttcataaggagatactccacatc 1174
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>ref|NM_193765.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1158

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 128/158 (81%)
 Strand = Plus / Minus

                                                                        
Query: 218  ccgacccaggtgtccagccggtcacgcagggacttcacctggtcaattccaaggaccctc 277
            |||||||| | ||||||||| ||||||| || |||||||||   ||||||||| || || 
Sbjct: 1097 ccgacccatgcgtccagccgctcacgcaaggccttcacctgtggaattccaagtactcta 1038

                                                                        
Query: 278  ggttgcgcccacgaaacatggacagtcccgtcgaccccatcaattatgccttcaataaga 337
            || ||  |||| || || || || || | ||| ||| |||||||||| ||||| ||||||
Sbjct: 1037 ggctggacccatgacacgtgaactgtgctgtccacctcatcaattatcccttctataaga 978

                                                  
Query: 338  tgagcagagaggctcttcattagtagatactccacatc 375
            ||| | |||||||||||||| || ||||| ||||||||
Sbjct: 977  tgaaccgagaggctcttcataagaagatattccacatc 940
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>dbj|AK069825.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023028J18, full
            insert sequence
          Length = 1517

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 128/158 (81%)
 Strand = Plus / Minus

                                                                        
Query: 218  ccgacccaggtgtccagccggtcacgcagggacttcacctggtcaattccaaggaccctc 277
            |||||||| | ||||||||| ||||||| || |||||||||   ||||||||| || || 
Sbjct: 1152 ccgacccatgcgtccagccgctcacgcaaggccttcacctgtggaattccaagtactcta 1093

                                                                        
Query: 278  ggttgcgcccacgaaacatggacagtcccgtcgaccccatcaattatgccttcaataaga 337
            || ||  |||| || || || || || | ||| ||| |||||||||| ||||| ||||||
Sbjct: 1092 ggctggacccatgacacgtgaactgtgctgtccacctcatcaattatcccttctataaga 1033

                                                  
Query: 338  tgagcagagaggctcttcattagtagatactccacatc 375
            ||| | |||||||||||||| || ||||| ||||||||
Sbjct: 1032 tgaaccgagaggctcttcataagaagatattccacatc 995
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>dbj|AB070261.1| Oryza sativa (japonica cultivar-group) OsRPN9a mRNA for 26S
           proteasome regulatory particle non-ATPase subunit9a,
           partial cds
          Length = 707

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 128/158 (81%)
 Strand = Plus / Minus

                                                                       
Query: 218 ccgacccaggtgtccagccggtcacgcagggacttcacctggtcaattccaaggaccctc 277
           |||||||| | ||||||||| ||||||| || |||||||||   ||||||||| || || 
Sbjct: 279 ccgacccatgcgtccagccgctcacgcaaggccttcacctgtggaattccaagtactcta 220

                                                                       
Query: 278 ggttgcgcccacgaaacatggacagtcccgtcgaccccatcaattatgccttcaataaga 337
           || ||  |||| || || || || || | ||| ||| |||||||||| ||||| ||||||
Sbjct: 219 ggctggacccatgacacgtgaactgtgctgtccacctcatcaattatcccttctataaga 160

                                                 
Query: 338 tgagcagagaggctcttcattagtagatactccacatc 375
           ||| | |||||||||||||| || ||||| ||||||||
Sbjct: 159 tgaaccgagaggctcttcataagaagatattccacatc 122
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>dbj|AK061942.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-D11, full
           insert sequence
          Length = 1390

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 53/61 (86%)
 Strand = Plus / Minus

                                                                       
Query: 315 catcaattatgccttcaataagatgagcagagaggctcttcattagtagatactccacat 374
           |||||||||| || || ||||||||| | |||||||||||||| || ||||| |||||||
Sbjct: 831 catcaattatcccctctataagatgaaccgagaggctcttcataagaagatattccacat 772

            
Query: 375 c 375
           |
Sbjct: 771 c 771
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>dbj|AK101240.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033031O16, full
            insert sequence
          Length = 1579

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 53/61 (86%)
 Strand = Plus / Minus

                                                                        
Query: 315  catcaattatgccttcaataagatgagcagagaggctcttcattagtagatactccacat 374
            |||||||||| || || ||||||||| | |||||||||||||| || ||||| |||||||
Sbjct: 1113 catcaattatcccctctataagatgaaccgagaggctcttcataagaagatattccacat 1054

             
Query: 375  c 375
            |
Sbjct: 1053 c 1053
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>dbj|AK068605.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013157F16, full
            insert sequence
          Length = 1661

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 53/61 (86%)
 Strand = Plus / Minus

                                                                        
Query: 315  catcaattatgccttcaataagatgagcagagaggctcttcattagtagatactccacat 374
            |||||||||| || || ||||||||| | |||||||||||||| || ||||| |||||||
Sbjct: 1108 catcaattatcccctctataagatgaaccgagaggctcttcataagaagatattccacat 1049

             
Query: 375  c 375
            |
Sbjct: 1048 c 1048
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>dbj|AK064850.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000H02, full
            insert sequence
          Length = 1508

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 53/61 (86%)
 Strand = Plus / Minus

                                                                        
Query: 315  catcaattatgccttcaataagatgagcagagaggctcttcattagtagatactccacat 374
            |||||||||| || || ||||||||| | |||||||||||||| || ||||| |||||||
Sbjct: 1108 catcaattatcccctctataagatgaaccgagaggctcttcataagaagatattccacat 1049

             
Query: 375  c 375
            |
Sbjct: 1048 c 1048
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>dbj|AB070262.1| Oryza sativa (japonica cultivar-group) OsRPN9b mRNA for 26S
           proteasome regulatory particle non-ATPase subunit9b,
           partial cds
          Length = 1239

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 53/61 (86%)
 Strand = Plus / Minus

                                                                       
Query: 315 catcaattatgccttcaataagatgagcagagaggctcttcattagtagatactccacat 374
           |||||||||| || || ||||||||| | |||||||||||||| || ||||| |||||||
Sbjct: 689 catcaattatcccctctataagatgaaccgagaggctcttcataagaagatattccacat 630

            
Query: 375 c 375
           |
Sbjct: 629 c 629
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>ref|NM_203160.1| Arabidopsis thaliana unknown protein AT5G45620 transcript variant
            AT5G45620.2 mRNA, complete cds
          Length = 1793

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 179  gtctcggcttcgacagatagcaaagtggtgtg 210
            ||||||||||| |||||||| |||||||||||
Sbjct: 1522 gtctcggcttcaacagatagtaaagtggtgtg 1491
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>ref|NM_123930.3| Arabidopsis thaliana unknown protein AT5G45620 transcript variant
            AT5G45620.1 mRNA, complete cds
          Length = 1488

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 179  gtctcggcttcgacagatagcaaagtggtgtg 210
            ||||||||||| |||||||| |||||||||||
Sbjct: 1217 gtctcggcttcaacagatagtaaagtggtgtg 1186
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>gb|AY230841.1| Arabidopsis thaliana 26S proteasome subunit RPN9a (RPN9a) mRNA,
            complete cds
          Length = 1315

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 179  gtctcggcttcgacagatagcaaagtggtgtg 210
            ||||||||||| |||||||| |||||||||||
Sbjct: 1139 gtctcggcttcaacagatagtaaagtggtgtg 1108
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>gb|AY093136.1| Arabidopsis thaliana 26S proteasome subunit-like protein (At5g45620)
            mRNA, complete cds
          Length = 1438

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 179  gtctcggcttcgacagatagcaaagtggtgtg 210
            ||||||||||| |||||||| |||||||||||
Sbjct: 1228 gtctcggcttcaacagatagtaaagtggtgtg 1197
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>emb|BX830748.1|CNS09ZGZ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS1ZC12 of Adult vegetative tissue of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1701

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 179  gtctcggcttcgacagatagcaaagtggtgtg 210
            ||||||||||| |||||||| |||||||||||
Sbjct: 1521 gtctcggcttcaacagatagtaaagtggtgtg 1490
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>gb|BT003384.1| Arabidopsis thaliana 26S proteasome subunit-like protein (At5g45620)
            mRNA, complete cds
          Length = 1224

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 179  gtctcggcttcgacagatagcaaagtggtgtg 210
            ||||||||||| |||||||| |||||||||||
Sbjct: 1139 gtctcggcttcaacagatagtaaagtggtgtg 1108
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>dbj|AB012245.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MRA19
          Length = 86722

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 179  gtctcggcttcgacagatagcaaagtggtgtg 210
            ||||||||||| |||||||| |||||||||||
Sbjct: 7892 gtctcggcttcaacagatagtaaagtggtgtg 7861
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>emb|BX832332.1|CNS09ZTC Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH66ZB10 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1383

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 179  gtctcggcttcgacagatagcaaagtggtgt 209
            ||||||||||| |||||||| ||||||||||
Sbjct: 1181 gtctcggcttcaacagatagtaaagtggtgt 1151
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>emb|AL353739.4| Human DNA sequence from clone RP11-19D15 on chromosome 20 Contains STSs
             and GSSs, complete sequence
          Length = 101388

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 83    caaaatcaaatttcaaattcca 104
             ||||||||||||||||||||||
Sbjct: 70490 caaaatcaaatttcaaattcca 70469
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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 167     accaggtcgggcgtctcggcttcgac 192
               |||| |||||||||||||||||||||
Sbjct: 1701431 accatgtcgggcgtctcggcttcgac 1701456
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>ref|XM_638838.1| Dictyostelium discoideum hypothetical protein (DDB0203305), partial
           mRNA
          Length = 1263

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 80  aatcaaaatcaaatttcaaat 100
           |||||||||||||||||||||
Sbjct: 628 aatcaaaatcaaatttcaaat 648



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 80  aatcaaaatcaaatttcaaat 100
           |||||||||||||||||||||
Sbjct: 610 aatcaaaatcaaatttcaaat 630
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>gb|DQ333810.1| Liua shihi mitochondrion, complete genome
          Length = 16376

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 311   accccatcaattatgccttcaataa 335
             ||||||| |||||||||||||||||
Sbjct: 11846 accccattaattatgccttcaataa 11870
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>gb|AC122866.4| Mus musculus BAC clone RP23-145J18 from 8, complete sequence
          Length = 200136

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 147   ccaaagaacatcaagaagcta 167
             |||||||||||||||||||||
Sbjct: 66503 ccaaagaacatcaagaagcta 66523
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>gb|AC165355.3| Mus musculus BAC clone RP23-129P10 from chromosome 6, complete sequence
          Length = 199100

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 113   ttgtgtaaggtcacagacacc 133
             |||||||||||||||||||||
Sbjct: 59414 ttgtgtaaggtcacagacacc 59394
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>emb|CR931736.1| Medicago truncatula chromosome 5 clone mte1-84f20, COMPLETE SEQUENCE
          Length = 149149

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 80    aatcaaaatcaaatttcaaat 100
             |||||||||||||||||||||
Sbjct: 45207 aatcaaaatcaaatttcaaat 45187
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>gb|AC105132.4| Homo sapiens chromosome 15, clone RP11-457H6, complete sequence
          Length = 70309

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 82    tcaaaatcaaatttcaaattc 102
             |||||||||||||||||||||
Sbjct: 14916 tcaaaatcaaatttcaaattc 14936
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>gb|AY593192.1| Liua shihi NADH dehydrogenase subunit 5 (ND5) gene, complete cds;
           mitochondrial
          Length = 1815

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 311 accccatcaattatgccttcaataa 335
           ||||||| |||||||||||||||||
Sbjct: 58  accccattaattatgccttcaataa 82
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>gb|AC116986.2| Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4,
              complete sequence
          Length = 333321

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 80     aatcaaaatcaaatttcaaat 100
              |||||||||||||||||||||
Sbjct: 187231 aatcaaaatcaaatttcaaat 187251



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 80     aatcaaaatcaaatttcaaat 100
              |||||||||||||||||||||
Sbjct: 187213 aatcaaaatcaaatttcaaat 187233
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>dbj|BS000038.1| Pan troglodytes chromosome 22 clone:PTB-005J02, map 22, complete
              sequences
          Length = 142533

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 82     tcaaaatcaaatttcaaattc 102
              |||||||||||||||||||||
Sbjct: 114542 tcaaaatcaaatttcaaattc 114522
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>gb|AC107650.19| Mus musculus chromosome 6, clone RP23-133I9, complete sequence
          Length = 225883

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 113   ttgtgtaaggtcacagacacc 133
             |||||||||||||||||||||
Sbjct: 58487 ttgtgtaaggtcacagacacc 58507
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>dbj|AP001671.1| Homo sapiens genomic DNA, chromosome 21q, section 15/105
          Length = 340000

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 82     tcaaaatcaaatttcaaattc 102
              |||||||||||||||||||||
Sbjct: 127513 tcaaaatcaaatttcaaattc 127493
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>dbj|AP000404.2| Homo sapiens genomic DNA, chromosome 21q21.1-q21.2, clone:T1545,
             LL56-APP region, complete sequence
          Length = 65379

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 82    tcaaaatcaaatttcaaattc 102
             |||||||||||||||||||||
Sbjct: 52300 tcaaaatcaaatttcaaattc 52280
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                               
Query: 344     gagaggctcttcattagtagatactccacatc 375
               |||||||||||||| || ||||| ||||||||
Sbjct: 5970729 gagaggctcttcataagaagatattccacatc 5970698
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>gb|AC104111.2| Homo sapiens chromosome 5 clone RP11-176O14, complete sequence
          Length = 171234

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 80     aatcaaaatcaaatttcaaa 99
              ||||||||||||||||||||
Sbjct: 101602 aatcaaaatcaaatttcaaa 101621
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>gb|AC022360.23| Homo sapiens 8 BAC RP11-58O3 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 171991

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 82    tcaaaatcaaatttcaaatt 101
             ||||||||||||||||||||
Sbjct: 74925 tcaaaatcaaatttcaaatt 74944
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>gb|AC025765.6| Homo sapiens chromosome 5 clone CTB-57H20, complete sequence
          Length = 218515

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 83    caaaatcaaatttcaaattc 102
             ||||||||||||||||||||
Sbjct: 11478 caaaatcaaatttcaaattc 11497
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>gb|AC134241.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0085F02,
              complete sequence
          Length = 128535

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                              
Query: 344    gagaggctcttcattagtagatactccacatc 375
              |||||||||||||| || ||||| ||||||||
Sbjct: 120351 gagaggctcttcataagaagatattccacatc 120320
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>gb|AC135158.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1193C08,
             complete sequence
          Length = 111961

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 344   gagaggctcttcattagtagatactccacatc 375
             |||||||||||||| || ||||| ||||||||
Sbjct: 29264 gagaggctcttcataagaagatattccacatc 29233
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>gb|AC016925.15|AC016925 Homo sapiens X BAC RP11-434J4 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 133615

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 83    caaaatcaaatttcaaattc 102
             ||||||||||||||||||||
Sbjct: 44722 caaaatcaaatttcaaattc 44703
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                               
Query: 344     gagaggctcttcattagtagatactccacatc 375
               |||||||||||||| || ||||| ||||||||
Sbjct: 5969942 gagaggctcttcataagaagatattccacatc 5969911
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                                
Query: 344      gagaggctcttcattagtagatactccacatc 375
                |||||||||||||| || ||||| ||||||||
Sbjct: 17996725 gagaggctcttcataagaagatattccacatc 17996756
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>gb|AC009916.5|AC009916 Drosophila melanogaster, chromosome 3R, region 96A-96A, BAC clone
             BACR35N03, complete sequence
          Length = 169271

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 78    agaatcaaaatcaaatttca 97
             ||||||||||||||||||||
Sbjct: 60294 agaatcaaaatcaaatttca 60313
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>gb|AC017040.7| Homo sapiens BAC clone RP11-319B20 from 2, complete sequence
          Length = 178446

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 83     caaaatcaaatttcaaattc 102
              ||||||||||||||||||||
Sbjct: 150969 caaaatcaaatttcaaattc 150950
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>gb|AC016712.6| Homo sapiens BAC clone RP11-266F17 from 2, complete sequence
          Length = 159748

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 83    caaaatcaaatttcaaattc 102
             ||||||||||||||||||||
Sbjct: 48312 caaaatcaaatttcaaattc 48331
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>gb|AC093528.3| Homo sapiens chromosome 5 clone RP11-297K24, complete sequence
          Length = 198167

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 83     caaaatcaaatttcaaattc 102
              ||||||||||||||||||||
Sbjct: 155336 caaaatcaaatttcaaattc 155355
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>gb|AC078929.27| Homo sapiens 12 BAC RP11-797M17 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 107895

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 420   ttgtgcggtcttgagatgct 439
             ||||||||||||||||||||
Sbjct: 92175 ttgtgcggtcttgagatgct 92156
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>dbj|AP003213.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBa0054L14
          Length = 150022

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 344   gagaggctcttcattagtagatactccacatc 375
             |||||||||||||| || ||||| ||||||||
Sbjct: 23966 gagaggctcttcataagaagatattccacatc 23997
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>dbj|AP003077.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0520B06
          Length = 142667

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 344    gagaggctcttcattagtagatactccacatc 375
              |||||||||||||| || ||||| ||||||||
Sbjct: 116560 gagaggctcttcataagaagatattccacatc 116591
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>gb|AC008407.4|AC008407 Homo sapiens chromosome 5 clone CTC-278A2, complete sequence
          Length = 78849

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 83    caaaatcaaatttcaaattc 102
             ||||||||||||||||||||
Sbjct: 65966 caaaatcaaatttcaaattc 65985
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>gb|AE003748.3| Drosophila melanogaster chromosome 3R, section 86 of 118 of the complete
              sequence
          Length = 253272

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 78     agaatcaaaatcaaatttca 97
              ||||||||||||||||||||
Sbjct: 225784 agaatcaaaatcaaatttca 225765
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>dbj|AP000808.6| Homo sapiens genomic DNA, chromosome 11 clone:RP11-757G1, complete
             sequence
          Length = 175883

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 83    caaaatcaaatttcaaattc 102
             ||||||||||||||||||||
Sbjct: 46147 caaaatcaaatttcaaattc 46128
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>dbj|AP003732.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-682D22, complete
              sequence
          Length = 193132

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 83     caaaatcaaatttcaaattc 102
              ||||||||||||||||||||
Sbjct: 140533 caaaatcaaatttcaaattc 140514
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>emb|AL121944.14|HSDJ313I6 Human DNA sequence from clone RP1-313I6 on chromosome 6 Contains a
              KIAA0036 pseudogene, olfactory receptor 2W2, 2B7, 2B8 and
              1F12 pseudogenes (OR2W2P, OR2B7P, OR2B8 and OR1F12), the
              ZNF165 gene for zinc finger protein 165, two zinc finger
              protein pseudogenes, ESTs, STSs, GSSs and two CpG islands,
              complete sequence
          Length = 130279

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 83     caaaatcaaatttcaaattc 102
              ||||||||||||||||||||
Sbjct: 122505 caaaatcaaatttcaaattc 122524
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>dbj|AP006375.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT32M04, TM0219,
             complete sequence
          Length = 72880

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 81    atcaaaatcaaatttcaaat 100
             ||||||||||||||||||||
Sbjct: 23250 atcaaaatcaaatttcaaat 23269


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,659,211
Number of Sequences: 3902068
Number of extensions: 4659211
Number of successful extensions: 86894
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 86688
Number of HSP's gapped (non-prelim): 206
length of query: 470
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 448
effective length of database: 17,147,199,772
effective search space: 7681945497856
effective search space used: 7681945497856
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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