ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart06d07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YEH7_YEAST (P39978) Hypothetical 21.7 kDa protein in HXT8-CAN1 i... 30 2.1
2ATKA_HALSA (P57684) Potassium-transporting ATPase A chain (EC 3.... 29 4.6
3SAP3_HUMAN (P17900) Ganglioside GM2 activator precursor (GM2-AP)... 29 4.6

>YEH7_YEAST (P39978) Hypothetical 21.7 kDa protein in HXT8-CAN1 intergenic|
           region
          Length = 195

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
 Frame = +1

Query: 16  LLYFVSNQINSSARHRPMENKYRFPP-----IRAA*LACHGHMREGYRHLCFVPPDAALP 180
           +LY     +N  ++H P+    RFPP          + C   +++  R +C VPPD  L 
Sbjct: 43  ILYARFPLLNILSQHSPVYCSRRFPPDNDLITGLGNIRCGQLVKKALRRVCNVPPDHQLI 102

Query: 181 AWLPCLS*AAATFIW 225
           A +  +  A   F++
Sbjct: 103 ASVRSIGYARVAFVF 117



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>ATKA_HALSA (P57684) Potassium-transporting ATPase A chain (EC 3.6.3.12)|
           (Potassium-translocating ATPase A chain) (ATP
           phosphohydrolase [potassium-transporting] A chain)
           (Potassium-binding and translocating subunit A)
          Length = 582

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 267 EMETSDHRPPKRFRWFFRIQMLFS 338
           E   SDHRPP    WF R+  +F+
Sbjct: 34  EQANSDHRPPGYLSWFERLDEIFT 57



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>SAP3_HUMAN (P17900) Ganglioside GM2 activator precursor (GM2-AP) (Cerebroside|
           sulfate activator protein) (Shingolipid activator
           protein 3) (SAP-3) [Contains: Ganglioside GM2 activator
           isoform short]
          Length = 193

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
 Frame = +1

Query: 91  PIRAA*LACHGHMREGYRHLC---FVPPDAALPAWL 189
           P+R   L CH   +EG   L    FV PD  LP+WL
Sbjct: 128 PLRTYGLPCHCPFKEGTYSLPKSEFVVPDLELPSWL 163


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,470,417
Number of Sequences: 219361
Number of extensions: 1289792
Number of successful extensions: 3143
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3072
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3143
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2677159704
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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