Clone Name | rbart06d07 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 50.1 bits (25), Expect = 0.006 Identities = 28/29 (96%) Strand = Plus / Minus Query: 171 agccctgcctgcctggctgccttgcctct 199 ||||||||||||||| ||||||||||||| Sbjct: 17755784 agccctgcctgcctgcctgccttgcctct 17755756
>dbj|AP004743.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBb0026G06 Length = 123129 Score = 50.1 bits (25), Expect = 0.006 Identities = 28/29 (96%) Strand = Plus / Minus Query: 171 agccctgcctgcctggctgccttgcctct 199 ||||||||||||||| ||||||||||||| Sbjct: 26206 agccctgcctgcctgcctgccttgcctct 26178
>dbj|AK068107.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013130C21, full insert sequence Length = 1751 Score = 50.1 bits (25), Expect = 0.006 Identities = 28/29 (96%) Strand = Plus / Minus Query: 171 agccctgcctgcctggctgccttgcctct 199 ||||||||||||||| ||||||||||||| Sbjct: 35 agccctgcctgcctgcctgccttgcctct 7
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 46.1 bits (23), Expect = 0.097 Identities = 23/23 (100%) Strand = Plus / Minus Query: 421 gcaccttcctggaccgccgctgc 443 ||||||||||||||||||||||| Sbjct: 5633035 gcaccttcctggaccgccgctgc 5633013
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 155 tcgtgccgcctgatgcagccc 175 ||||||||||||||||||||| Sbjct: 271148 tcgtgccgcctgatgcagccc 271128
>emb|AL590429.9| Mouse DNA sequence from clone RP23-462O16 on chromosome 2, complete sequence Length = 190669 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 168 tgcagccctgcctgcctggctgcct 192 |||||||||||||||||| |||||| Sbjct: 155767 tgcagccctgcctgcctgcctgcct 155791
>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome Length = 3730232 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 325 agatgttgttttcttcagaa 344 |||||||||||||||||||| Sbjct: 1849500 agatgttgttttcttcagaa 1849519
>gb|AF223563.3|AH009202S4 Homo sapiens low-voltage-activated calcium channel alpha13.2 subunit delta25B splice variant (CACNA1H) gene, exons 11 through 36, and partial cds; and tryptase gamma 1 (TPSG1) gene, exon 6 and partial cds Length = 17799 Score = 40.1 bits (20), Expect = 6.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 171 agccctgcctgcctggctgccttgcctc 198 ||||| |||||||||||||||| ||||| Sbjct: 2329 agcccggcctgcctggctgcctagcctc 2302
>gb|AF509496.1| Chlamydomonas reinhardtii strain CC-125 putative amt protein gene, complete cds Length = 7383 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 ccctgcctgcctggctgcct 192 |||||||||||||||||||| Sbjct: 5836 ccctgcctgcctggctgcct 5855
>gb|AY018051.1| Oryza sativa microsatellite MRG0376 containing (AG)X31, closest to marker C166, genomic sequence Length = 262 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 174 cctgcctgcctggctgcctt 193 |||||||||||||||||||| Sbjct: 99 cctgcctgcctggctgcctt 80
>gb|AC161765.5| Mus musculus BAC clone RP23-85I5 from chromosome 8, complete sequence Length = 219629 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 171 agccctgcctgcctggctgccttg 194 ||||||| |||||||||||||||| Sbjct: 141105 agccctggctgcctggctgccttg 141082
>gb|AC121121.13| Mus musculus chromosome 9, clone RP23-401G21, complete sequence Length = 226672 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 174 cctgcctgcctggctgcctt 193 |||||||||||||||||||| Sbjct: 64910 cctgcctgcctggctgcctt 64929
>gb|AC079799.7| Homo sapiens BAC clone RP11-665O4 from 7, complete sequence Length = 172495 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 323 acagatgttgttttcttcag 342 |||||||||||||||||||| Sbjct: 53390 acagatgttgttttcttcag 53371
>gb|AC145924.3| Pan troglodytes BAC clone RP43-19G18 from 7, complete sequence Length = 205381 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 323 acagatgttgttttcttcag 342 |||||||||||||||||||| Sbjct: 140335 acagatgttgttttcttcag 140354
>gb|AC121580.3| Mus musculus BAC clone RP23-255J21 from 9, complete sequence Length = 200282 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 174 cctgcctgcctggctgcctt 193 |||||||||||||||||||| Sbjct: 43081 cctgcctgcctggctgcctt 43062
>gb|AC098883.3| Mus musculus BAC clone RP23-122F3 from 16, complete sequence Length = 211348 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 174 cctgcctgcctggctgccttgcct 197 |||||||||||| ||||||||||| Sbjct: 37309 cctgcctgcctgcctgccttgcct 37332
>gb|AC121602.2| Mus musculus BAC clone RP23-309B19 from 10, complete sequence Length = 182661 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 174 cctgcctgcctggctgccttgcct 197 |||||||||||| ||||||||||| Sbjct: 163151 cctgcctgcctgcctgccttgcct 163128
>emb|CR708661.2|CNS0G9R5 Tetraodon nigroviridis full-length cDNA Length = 1193 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 ccctgcctgcctggctgcct 192 |||||||||||||||||||| Sbjct: 340 ccctgcctgcctggctgcct 359
>emb|CR685216.1|CNS0FRNW Tetraodon nigroviridis full-length cDNA Length = 1163 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 ccctgcctgcctggctgcct 192 |||||||||||||||||||| Sbjct: 323 ccctgcctgcctggctgcct 342
>gb|AC004027.1| Homo sapiens PAC clone RP4-791I21 from 7, complete sequence Length = 133191 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 323 acagatgttgttttcttcag 342 |||||||||||||||||||| Sbjct: 23805 acagatgttgttttcttcag 23824
>gb|AC165163.2| Mus musculus BAC clone RP23-146B12 from chromosome 14, complete sequence Length = 178254 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 319 gaatacagatgttgttttct 338 |||||||||||||||||||| Sbjct: 95061 gaatacagatgttgttttct 95042
>emb|BX936398.1| Yersinia pseudotuberculosis IP32953 genome, complete sequence Length = 4744671 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 3 tcagatccatggccttctttattt 26 ||||||||||||| |||||||||| Sbjct: 4208880 tcagatccatggcgttctttattt 4208857
>emb|BX572607.1| Rhodopseudomonas palustris CGA009 complete genome; segment 15/16 Length = 345012 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 257 accggccggcgagatggaaa 276 |||||||||||||||||||| Sbjct: 93110 accggccggcgagatggaaa 93129
>gb|AC182716.2| Populus trichocarpa clone Pop1-88J20, complete sequence Length = 33120 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 373 ttcctcgcccacgcgctgcg 392 |||||||||||||||||||| Sbjct: 786 ttcctcgcccacgcgctgcg 767
>gb|AE006466.1| Homo sapiens 16p13.3 sequence section 5 of 8 Length = 265786 Score = 40.1 bits (20), Expect = 6.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 171 agccctgcctgcctggctgccttgcctc 198 ||||| |||||||||||||||| ||||| Sbjct: 142327 agcccggcctgcctggctgcctagcctc 142300
>gb|AC120498.2| Homo sapiens chromosome 16 clone RP11-616M22, complete sequence Length = 195680 Score = 40.1 bits (20), Expect = 6.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 171 agccctgcctgcctggctgccttgcctc 198 ||||| |||||||||||||||| ||||| Sbjct: 85608 agcccggcctgcctggctgcctagcctc 85581
>emb|AL121750.22|HSJ323A24 Human DNA sequence from clone RP3-323A24 on chromosome 4, complete sequence Length = 149969 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 172 gccctgcctgcctggctgcc 191 |||||||||||||||||||| Sbjct: 109260 gccctgcctgcctggctgcc 109279
>gb|AC009986.10| Homo sapiens chromosome 10 clone RP11-346D6, complete sequence Length = 181733 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 320 aatacagatgttgttttctt 339 |||||||||||||||||||| Sbjct: 120531 aatacagatgttgttttctt 120550
>gb|AC162923.2| Mus musculus BAC clone RP23-304O17 from chromosome 17, complete sequence Length = 192669 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 174 cctgcctgcctggctgccttgcct 197 |||||||||||| ||||||||||| Sbjct: 105745 cctgcctgcctgcctgccttgcct 105768 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 174 cctgcctgcctggctgccttgcct 197 |||||||||||| ||||||||||| Sbjct: 105183 cctgcctgcctgcctgccttgcct 105206
>gb|AC158800.6| Mus musculus 10 BAC RP23-435N6 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 190805 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 174 cctgcctgcctggctgccttgcct 197 |||||||||||| ||||||||||| Sbjct: 95761 cctgcctgcctgcctgccttgcct 95738
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 174 cctgcctgcctggctgcctt 193 |||||||||||||||||||| Sbjct: 3162613 cctgcctgcctggctgcctt 3162594
>dbj|AP003905.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1177_E11 Length = 92375 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 174 cctgcctgcctggctgcctt 193 |||||||||||||||||||| Sbjct: 18693 cctgcctgcctggctgcctt 18674
>emb|CR391974.8| Zebrafish DNA sequence from clone CH211-59E10 in linkage group 19, complete sequence Length = 179116 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 322 tacagatgttgttttcttcagaat 345 |||||||||||||||| ||||||| Sbjct: 79539 tacagatgttgttttcctcagaat 79562
>emb|CR392035.10| Zebrafish DNA sequence from clone CH211-184N9 in linkage group 1, complete sequence Length = 110627 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 335 ttcttcagaatccaggtctt 354 |||||||||||||||||||| Sbjct: 51585 ttcttcagaatccaggtctt 51604
>emb|Z54072.1|HSL261H12 Human DNA sequence from clone LA04NC01-261H12 on chromosome 4, complete sequence Length = 40198 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 172 gccctgcctgcctggctgcc 191 |||||||||||||||||||| Sbjct: 27988 gccctgcctgcctggctgcc 28007
>emb|AL626768.21| Mouse DNA sequence from clone RP23-347B4 on chromosome 4, complete sequence Length = 227165 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 170 cagccctgcctgcctggctgcctt 193 ||||||| |||||||||||||||| Sbjct: 124924 cagccctccctgcctggctgcctt 124901
>emb|AL031715.31|HS357D8 Human DNA sequence from clone LA16-357D8 on chromosome 16, complete sequence Length = 36006 Score = 40.1 bits (20), Expect = 6.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 171 agccctgcctgcctggctgccttgcctc 198 ||||| |||||||||||||||| ||||| Sbjct: 1635 agcccggcctgcctggctgcctagcctc 1608
>emb|AL645563.12| Mouse DNA sequence from clone RP23-132L14 on chromosome 4, complete sequence Length = 214456 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 278 atcagatcacaggcctccca 297 |||||||||||||||||||| Sbjct: 104721 atcagatcacaggcctccca 104740
>emb|AL670227.7| Mouse DNA sequence from clone RP23-317N1 on chromosome 4, complete sequence Length = 219973 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 174 cctgcctgcctggctgccttgcct 197 |||||||||||| ||||||||||| Sbjct: 184237 cctgcctgcctgcctgccttgcct 184260
>gb|AC170186.3| Mus musculus chromosome 5, clone wi1-1070G1, complete sequence Length = 37126 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 174 cctgcctgcctggctgcctt 193 |||||||||||||||||||| Sbjct: 7846 cctgcctgcctggctgcctt 7865
>emb|AL683882.8| Mouse DNA sequence from clone RP23-205P2 on chromosome 2, complete sequence Length = 74687 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 174 cctgcctgcctggctgccttgcct 197 |||||||||||| ||||||||||| Sbjct: 50711 cctgcctgcctgtctgccttgcct 50688
>emb|AL359399.3|CNS05TEV Human chromosome 14 DNA sequence BAC C-2223O18 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 134213 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 166 gatgcagccctgcctgcctg 185 |||||||||||||||||||| Sbjct: 35856 gatgcagccctgcctgcctg 35837 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,766,086 Number of Sequences: 3902068 Number of extensions: 3766086 Number of successful extensions: 97356 Number of sequences better than 10.0: 42 Number of HSP's better than 10.0 without gapping: 42 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 97011 Number of HSP's gapped (non-prelim): 345 length of query: 447 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 425 effective length of database: 17,147,199,772 effective search space: 7287559903100 effective search space used: 7287559903100 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)