ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart06d06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC163294.2| Mus musculus BAC clone RP23-187J1 from chromosome... 46 0.097
2gb|AC158998.2| Mus musculus BAC clone RP24-290P19 from chromosom... 46 0.097
3dbj|AP002886.3| Homo sapiens genomic DNA, chromosome 11q clone:R... 44 0.39
4gb|BC072844.1| Xenopus laevis hypothetical protein LOC443585, mR... 42 1.5
5gb|AC167241.2| Mus musculus BAC clone RP24-560M14 from chromosom... 42 1.5
6gb|AC132944.3| Mus musculus BAC clone RP24-284N8 from chromosome... 42 1.5
7gb|AC159893.2| Mus musculus BAC clone RP23-365N23 from chromosom... 42 1.5
8dbj|AK029824.1| Mus musculus adult male testis cDNA, RIKEN full-... 42 1.5
9dbj|AK080880.1| Mus musculus 4 days neonate male adipose cDNA, R... 42 1.5
10gb|AC067944.5| Homo sapiens BAC clone RP11-707O14 from 2, comple... 42 1.5
11gb|AC105422.3| Homo sapiens BAC clone RP11-707O8 from 2, complet... 42 1.5
12gb|AC020637.9|AC020637 Homo sapiens 12 BAC RP11-530H22 (Roswell ... 42 1.5
13ref|NM_173435.1| Mus musculus RIKEN cDNA 4930595M18 gene (493059... 42 1.5
14gb|AC125796.2| Homo sapiens chromosome 16 clone RP11-420N3, comp... 42 1.5
15dbj|BA000028.3| Oceanobacillus iheyensis HTE831 DNA, complete ge... 42 1.5
16gb|AC007012.1|AC007012 Homo sapiens chromosome 16, clone 185J20,... 42 1.5
17emb|BX470101.6| Mouse DNA sequence from clone RP23-217L21 on chr... 42 1.5
18gb|AC174644.2| Mus musculus BAC clone RP23-432C18 from chromosom... 42 1.5
19gb|AC170884.3| Mus musculus BAC clone RP24-111L17 from chromosom... 42 1.5
20emb|AL844210.7| Mouse DNA sequence from clone RP23-235I13 on chr... 42 1.5
21emb|AL672224.15| Mouse DNA sequence from clone RP23-360E14 on ch... 42 1.5
22ref|NM_133259.2| Homo sapiens leucine-rich PPR-motif containing ... 40 6.0
23ref|XM_531800.2| PREDICTED: Canis familiaris similar to leucine-... 40 6.0
24gb|BC026034.1| Homo sapiens leucine-rich PPR-motif containing, m... 40 6.0
25gb|AC073517.6| Homo sapiens BAC clone RP11-163E9 from 7, complet... 40 6.0
26gb|AC140549.12| Medicago truncatula clone mth2-28o14, complete s... 40 6.0
27emb|AL591045.5| Human DNA sequence from clone RP11-155H6 on chro... 40 6.0
28emb|AL391724.7| Human DNA sequence from clone RP11-350A18 on chr... 40 6.0
29emb|AL353680.8| Human DNA sequence from clone RP11-252M21 on chr... 40 6.0
30emb|AL121748.7|HSA342D11 Human DNA sequence from clone RP11-342D... 40 6.0
31emb|CR407559.8| Zebrafish DNA sequence from clone CH211-283G2 in... 40 6.0
32emb|BX842656.1| Bdellovibrio bacteriovorus complete genome, stra... 40 6.0
33gb|BC050311.1| Homo sapiens leucine-rich PPR-motif containing, m... 40 6.0
34gb|AY289212.1| Homo sapiens leucine-rich PPR motif-containing pr... 40 6.0
35gb|AC102677.9| Mus musculus chromosome 5, clone RP24-67M11, comp... 40 6.0
36dbj|AK125781.1| Homo sapiens cDNA FLJ43793 fis, clone TESTI40000... 40 6.0
37gb|AC110023.3| Homo sapiens chromosome 15, clone RP11-739G5, com... 40 6.0
38gb|AC090762.9| Homo sapiens chromosome 15, clone RP11-387E8, com... 40 6.0
39gb|M92439.1|HUM130LEU Homo sapiens leucine-rich PPR-motif contai... 40 6.0
40gb|AC008871.5| Homo sapiens chromosome 5 clone CTD-2197I11, comp... 40 6.0
41gb|AC093668.4| Homo sapiens BAC clone RP11-514P8 from 7, complet... 40 6.0
42gb|AC074354.8|AC074354 Genomic Sequence for Oryza sativa, Nippon... 40 6.0
43gb|AC016566.6| Homo sapiens chromosome 5 clone CTC-547G6, comple... 40 6.0
44dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
45dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
46gb|AC087884.18| Homo sapiens 12 BAC RP11-416A17 (Roswell Park Ca... 40 6.0
47gb|AC158498.3| Medicago truncatula chromosome 2 BAC clone mth2-6... 40 6.0
48gb|AC013474.10| Homo sapiens BAC clone RP11-505O20 from 2, compl... 40 6.0
49gb|AC084471.1|AC084471 Caenorhabditis briggsae cosmid CB048J20, ... 40 6.0
50gb|AC019064.6| Homo sapiens BAC clone RP11-153O16 from 2, comple... 40 6.0
51gb|AC093133.3| Papio anubis clone RP41-57F8, complete sequence 40 6.0
52gb|AC117622.10| Mus musculus chromosome 5, clone RP23-114L5, com... 40 6.0
53emb|AL512360.2|CNS07EF9 Human chromosome 14 DNA sequence BAC R-7... 40 6.0
54gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 6.0
55gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.0
56emb|AL713940.4|CNS07YPM Oryza sativa chromosome 12, . BAC OJ1327... 40 6.0
57gb|AC131189.3| Mus musculus BAC clone RP24-330P2 from 8, complet... 40 6.0
58gb|AC146603.3| Mus musculus BAC clone RP23-304P17 from 8, comple... 40 6.0 
>gb|AC163294.2| Mus musculus BAC clone RP23-187J1 from chromosome 9, complete sequence
          Length = 203706

 Score = 46.1 bits (23), Expect = 0.097
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 96    aatttagcacagaatgagaagaa 118
             |||||||||||||||||||||||
Sbjct: 88551 aatttagcacagaatgagaagaa 88529
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>gb|AC158998.2| Mus musculus BAC clone RP24-290P19 from chromosome 9, complete
            sequence
          Length = 173036

 Score = 46.1 bits (23), Expect = 0.097
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 96   aatttagcacagaatgagaagaa 118
            |||||||||||||||||||||||
Sbjct: 5383 aatttagcacagaatgagaagaa 5405
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>dbj|AP002886.3| Homo sapiens genomic DNA, chromosome 11q clone:RP11-1133J7, complete
              sequences
          Length = 168406

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 114    aagaaaaagataacacaatgcc 135
              ||||||||||||||||||||||
Sbjct: 103722 aagaaaaagataacacaatgcc 103743
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>gb|BC072844.1| Xenopus laevis hypothetical protein LOC443585, mRNA (cDNA clone
            IMAGE:4971062), partial cds
          Length = 4269

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 104  acagaatgagaagaaaaagat 124
            |||||||||||||||||||||
Sbjct: 2949 acagaatgagaagaaaaagat 2969
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>gb|AC167241.2| Mus musculus BAC clone RP24-560M14 from chromosome 17, complete sequence
          Length = 184079

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 204    gaaagaaaagaacaacatcaaaacc 228
              |||||||||||| ||||||||||||
Sbjct: 130689 gaaagaaaagaagaacatcaaaacc 130713
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>gb|AC132944.3| Mus musculus BAC clone RP24-284N8 from chromosome 3, complete sequence
          Length = 145784

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 138   atcatcttacaacaatctgaaaaga 162
             |||||||||||||||||| ||||||
Sbjct: 22270 atcatcttacaacaatctcaaaaga 22294
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>gb|AC159893.2| Mus musculus BAC clone RP23-365N23 from chromosome 9, complete sequence
          Length = 196765

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 330   cttcctgtgcgttttgtttcctgggtgac 358
             |||||||||| ||||||||||||| ||||
Sbjct: 45562 cttcctgtgccttttgtttcctggttgac 45590
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>dbj|AK029824.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
            library, clone:4930595M18 product:hypothetical
            RNA-binding region RNP-1  (RNA recognition motif)/RING
            finger containing protein, full insert sequence
          Length = 2647

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 145  tacaacaatctgaaaagagaa 165
            |||||||||||||||||||||
Sbjct: 1182 tacaacaatctgaaaagagaa 1202
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>dbj|AK080880.1| Mus musculus 4 days neonate male adipose cDNA, RIKEN full-length
            enriched library, clone:B430115H05
            product:unclassifiable, full insert sequence
          Length = 3245

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 103  cacagaatgagaagaaaaaga 123
            |||||||||||||||||||||
Sbjct: 1785 cacagaatgagaagaaaaaga 1765
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>gb|AC067944.5| Homo sapiens BAC clone RP11-707O14 from 2, complete sequence
          Length = 108099

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 87    atgaaaacaaatttagcacag 107
             |||||||||||||||||||||
Sbjct: 60207 atgaaaacaaatttagcacag 60227
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>gb|AC105422.3| Homo sapiens BAC clone RP11-707O8 from 2, complete sequence
          Length = 41655

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 80    ctagaccatgaaaacaaattt 100
             |||||||||||||||||||||
Sbjct: 32107 ctagaccatgaaaacaaattt 32127
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>gb|AC020637.9|AC020637 Homo sapiens 12 BAC RP11-530H22 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 177317

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 145    tacaacaatctgaaaagagaa 165
              |||||||||||||||||||||
Sbjct: 121859 tacaacaatctgaaaagagaa 121879
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>ref|NM_173435.1| Mus musculus RIKEN cDNA 4930595M18 gene (4930595M18Rik), mRNA
          Length = 2647

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 145  tacaacaatctgaaaagagaa 165
            |||||||||||||||||||||
Sbjct: 1182 tacaacaatctgaaaagagaa 1202
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>gb|AC125796.2| Homo sapiens chromosome 16 clone RP11-420N3, complete sequence
          Length = 162666

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 4    taaaataaaataaactggttt 24
            |||||||||||||||||||||
Sbjct: 9944 taaaataaaataaactggttt 9924
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>dbj|BA000028.3| Oceanobacillus iheyensis HTE831 DNA, complete genome
          Length = 3630528

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 103    cacagaatgagaagaaaaaga 123
              |||||||||||||||||||||
Sbjct: 907332 cacagaatgagaagaaaaaga 907352
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>gb|AC007012.1|AC007012 Homo sapiens chromosome 16, clone 185J20, complete sequence
          Length = 168731

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 4     taaaataaaataaactggttt 24
             |||||||||||||||||||||
Sbjct: 30570 taaaataaaataaactggttt 30590
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>emb|BX470101.6| Mouse DNA sequence from clone RP23-217L21 on chromosome X, complete
              sequence
          Length = 161169

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 145    tacaacaatctgaaaagagaa 165
              |||||||||||||||||||||
Sbjct: 160224 tacaacaatctgaaaagagaa 160204
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>gb|AC174644.2| Mus musculus BAC clone RP23-432C18 from chromosome 9, complete sequence
          Length = 199707

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 330   cttcctgtgcgttttgtttcctgggtgac 358
             |||||||||| ||||||||||||| ||||
Sbjct: 97405 cttcctgtgccttttgtttcctggttgac 97433
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>gb|AC170884.3| Mus musculus BAC clone RP24-111L17 from chromosome 17, complete
             sequence
          Length = 180189

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 204   gaaagaaaagaacaacatcaaaacc 228
             |||||||||||| ||||||||||||
Sbjct: 63822 gaaagaaaagaagaacatcaaaacc 63846
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>emb|AL844210.7| Mouse DNA sequence from clone RP23-235I13 on chromosome X, complete
            sequence
          Length = 140246

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 145  tacaacaatctgaaaagagaa 165
            |||||||||||||||||||||
Sbjct: 1055 tacaacaatctgaaaagagaa 1035
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>emb|AL672224.15| Mouse DNA sequence from clone RP23-360E14 on chromosome X, complete
            sequence
          Length = 162162

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 103  cacagaatgagaagaaaaaga 123
            |||||||||||||||||||||
Sbjct: 9808 cacagaatgagaagaaaaaga 9828
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>ref|NM_133259.2| Homo sapiens leucine-rich PPR-motif containing (LRPPRC), mRNA
          Length = 5095

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 418  caattataccttgaacattt 437
            ||||||||||||||||||||
Sbjct: 1436 caattataccttgaacattt 1417
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>ref|XM_531800.2| PREDICTED: Canis familiaris similar to leucine-rich PPR
            motif-containing protein (LOC474572), mRNA
          Length = 4627

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 418  caattataccttgaacattt 437
            ||||||||||||||||||||
Sbjct: 1378 caattataccttgaacattt 1359
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>gb|BC026034.1| Homo sapiens leucine-rich PPR-motif containing, mRNA (cDNA clone
            IMAGE:4904213), containing frame-shift errors
          Length = 1918

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 418  caattataccttgaacattt 437
            ||||||||||||||||||||
Sbjct: 1409 caattataccttgaacattt 1390
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>gb|AC073517.6| Homo sapiens BAC clone RP11-163E9 from 7, complete sequence
          Length = 67706

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 207   agaaaagaacaacatcaaaa 226
             ||||||||||||||||||||
Sbjct: 18550 agaaaagaacaacatcaaaa 18531
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>gb|AC140549.12| Medicago truncatula clone mth2-28o14, complete sequence
          Length = 139778

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 205   aaagaaaagaacaacatcaa 224
             ||||||||||||||||||||
Sbjct: 91926 aaagaaaagaacaacatcaa 91945
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>emb|AL591045.5| Human DNA sequence from clone RP11-155H6 on chromosome 6 Contains part
             of the MAP3K4 gene for mitogen-activated protein kinase
             kinase kinase 4 (MTK1, MEKK4, MAPKKK4, KIAA0213, homolog
             of yeast SSK2/SSK22 MAP kinase kinase kinase), complete
             sequence
          Length = 27353

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 151   aatctgaaaagagaaattct 170
             ||||||||||||||||||||
Sbjct: 20798 aatctgaaaagagaaattct 20779
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>emb|AL391724.7| Human DNA sequence from clone RP11-350A18 on chromosome 13 Contains a
              novel gene, complete sequence
          Length = 141628

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 376    caaaagtattattctggcca 395
              ||||||||||||||||||||
Sbjct: 119314 caaaagtattattctggcca 119333
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>emb|AL353680.8| Human DNA sequence from clone RP11-252M21 on chromosome 13 Contains a
              novel FLJ31073 containing gene, six novel genes and a CpG
              island, complete sequence
          Length = 176930

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 203    ggaaagaaaagaacaacatc 222
              ||||||||||||||||||||
Sbjct: 143665 ggaaagaaaagaacaacatc 143646
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>emb|AL121748.7|HSA342D11 Human DNA sequence from clone RP11-342D11 on chromosome 10 Contains the
             3' end of the NRP1 gene for neuropilin 1 and two novel
             genes, complete sequence
          Length = 178183

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 109   atgagaagaaaaagataaca 128
             ||||||||||||||||||||
Sbjct: 43683 atgagaagaaaaagataaca 43664
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>emb|CR407559.8| Zebrafish DNA sequence from clone CH211-283G2 in linkage group 5,
             complete sequence
          Length = 149707

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 2     actaaaataaaataaactgg 21
             ||||||||||||||||||||
Sbjct: 32866 actaaaataaaataaactgg 32885
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>emb|BX842656.1| Bdellovibrio bacteriovorus complete genome, strain HD100; segment 11/11
          Length = 307337

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 205    aaagaaaagaacaacatcaa 224
              ||||||||||||||||||||
Sbjct: 306092 aaagaaaagaacaacatcaa 306073
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>gb|BC050311.1| Homo sapiens leucine-rich PPR-motif containing, mRNA (cDNA clone
            MGC:48347 IMAGE:4827456), complete cds
          Length = 4313

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 418  caattataccttgaacattt 437
            ||||||||||||||||||||
Sbjct: 1387 caattataccttgaacattt 1368
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>gb|AY289212.1| Homo sapiens leucine-rich PPR motif-containing protein mRNA, complete
            cds
          Length = 5095

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 418  caattataccttgaacattt 437
            ||||||||||||||||||||
Sbjct: 1436 caattataccttgaacattt 1417
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>gb|AC102677.9| Mus musculus chromosome 5, clone RP24-67M11, complete sequence
          Length = 167898

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 199    tgcaggaaagaaaagaacaa 218
              ||||||||||||||||||||
Sbjct: 142820 tgcaggaaagaaaagaacaa 142839
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>dbj|AK125781.1| Homo sapiens cDNA FLJ43793 fis, clone TESTI4000014, highly  similar
            to 130 kDa leucine-rich protein
          Length = 5069

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 418  caattataccttgaacattt 437
            ||||||||||||||||||||
Sbjct: 1407 caattataccttgaacattt 1388
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>gb|AC110023.3| Homo sapiens chromosome 15, clone RP11-739G5, complete sequence
          Length = 166975

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 114   aagaaaaagataacacaatg 133
             ||||||||||||||||||||
Sbjct: 53044 aagaaaaagataacacaatg 53063
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>gb|AC090762.9| Homo sapiens chromosome 15, clone RP11-387E8, complete sequence
          Length = 192826

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 114   aagaaaaagataacacaatg 133
             ||||||||||||||||||||
Sbjct: 23485 aagaaaaagataacacaatg 23504
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>gb|M92439.1|HUM130LEU Homo sapiens leucine-rich PPR-motif containing protein (LRPPRC) mRNA,
            complete cds
          Length = 4782

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 418  caattataccttgaacattt 437
            ||||||||||||||||||||
Sbjct: 1060 caattataccttgaacattt 1041
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>gb|AC008871.5| Homo sapiens chromosome 5 clone CTD-2197I11, complete sequence
          Length = 174138

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 183    gaaagcatcaaaaccttgca 202
              ||||||||||||||||||||
Sbjct: 120512 gaaagcatcaaaaccttgca 120493
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>gb|AC093668.4| Homo sapiens BAC clone RP11-514P8 from 7, complete sequence
          Length = 200771

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 207   agaaaagaacaacatcaaaa 226
             ||||||||||||||||||||
Sbjct: 27396 agaaaagaacaacatcaaaa 27415
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>gb|AC074354.8|AC074354 Genomic Sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0065C16, from Chromosome 10, complete sequence
          Length = 146391

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 268   tgtagtttcatgttaaatgtacta 291
             ||||||| ||||||||||||||||
Sbjct: 10177 tgtagttacatgttaaatgtacta 10154
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>gb|AC016566.6| Homo sapiens chromosome 5 clone CTC-547G6, complete sequence
          Length = 170545

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 105   cagaatgagaagaaaaagat 124
             ||||||||||||||||||||
Sbjct: 92411 cagaatgagaagaaaaagat 92430
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 199      tgcaggaaagaaaagaacaa 218
                ||||||||||||||||||||
Sbjct: 25976065 tgcaggaaagaaaagaacaa 25976084
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 268     tgtagtttcatgttaaatgtacta 291
               ||||||| ||||||||||||||||
Sbjct: 8510613 tgtagttacatgttaaatgtacta 8510636
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>gb|AC087884.18| Homo sapiens 12 BAC RP11-416A17 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 196742

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 277    atgttaaatgtactaactcc 296
              ||||||||||||||||||||
Sbjct: 102248 atgttaaatgtactaactcc 102229
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>gb|AC158498.3| Medicago truncatula chromosome 2 BAC clone mth2-65n13, complete
             sequence
          Length = 124573

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 112   agaagaaaaagataacacaatgccttat 139
             ||||||| ||||||||||||||| ||||
Sbjct: 95348 agaagaagaagataacacaatgcattat 95375
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>gb|AC013474.10| Homo sapiens BAC clone RP11-505O20 from 2, complete sequence
          Length = 198187

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 104   acagaatgagaagaaaaaga 123
             ||||||||||||||||||||
Sbjct: 26312 acagaatgagaagaaaaaga 26293
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>gb|AC084471.1|AC084471 Caenorhabditis briggsae cosmid CB048J20, complete sequence
          Length = 95539

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 109   atgagaagaaaaagataaca 128
             ||||||||||||||||||||
Sbjct: 63399 atgagaagaaaaagataaca 63380
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>gb|AC019064.6| Homo sapiens BAC clone RP11-153O16 from 2, complete sequence
          Length = 92049

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 357  acccactgttgatctcccac 376
            ||||||||||||||||||||
Sbjct: 8275 acccactgttgatctcccac 8256
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>gb|AC093133.3| Papio anubis clone RP41-57F8, complete sequence
          Length = 177993

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 207   agaaaagaacaacatcaaaa 226
             ||||||||||||||||||||
Sbjct: 38671 agaaaagaacaacatcaaaa 38690
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>gb|AC117622.10| Mus musculus chromosome 5, clone RP23-114L5, complete sequence
          Length = 185368

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 199   tgcaggaaagaaaagaacaa 218
             ||||||||||||||||||||
Sbjct: 36432 tgcaggaaagaaaagaacaa 36451
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>emb|AL512360.2|CNS07EF9 Human chromosome 14 DNA sequence BAC R-737F10 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 192972

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 150    caatctgaaaagagaaattc 169
              ||||||||||||||||||||
Sbjct: 147488 caatctgaaaagagaaattc 147507
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 268     tgtagtttcatgttaaatgtacta 291
               ||||||| ||||||||||||||||
Sbjct: 8515712 tgtagttacatgttaaatgtacta 8515735
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 199      tgcaggaaagaaaagaacaa 218
                ||||||||||||||||||||
Sbjct: 25904241 tgcaggaaagaaaagaacaa 25904260
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>emb|AL713940.4|CNS07YPM Oryza sativa chromosome 12, . BAC OJ1327_A12 of library Monsanto from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 161806

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 199    tgcaggaaagaaaagaacaa 218
              ||||||||||||||||||||
Sbjct: 135606 tgcaggaaagaaaagaacaa 135587
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>gb|AC131189.3| Mus musculus BAC clone RP24-330P2 from 8, complete sequence
          Length = 157757

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 91     aaacaaatttagcacagaat 110
              ||||||||||||||||||||
Sbjct: 139538 aaacaaatttagcacagaat 139557
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>gb|AC146603.3| Mus musculus BAC clone RP23-304P17 from 8, complete sequence
          Length = 167842

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 91    aaacaaatttagcacagaat 110
             ||||||||||||||||||||
Sbjct: 85560 aaacaaatttagcacagaat 85579


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7,417,427
Number of Sequences: 3902068
Number of extensions: 7417427
Number of successful extensions: 329550
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 329135
Number of HSP's gapped (non-prelim): 415
length of query: 447
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 425
effective length of database: 17,147,199,772
effective search space: 7287559903100
effective search space used: 7287559903100
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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