>ACRO_PIG (P08001) Acrosin precursor (EC 3.4.21.10) (53 kDa fucose-binding|
           protein) [Contains: Acrosin light chain; Acrosin heavy
           chain]
          Length = 415

 Score = 34.3 bits (77), Expect = 0.16
 Identities = 17/44 (38%), Positives = 20/44 (45%)
 Frame = -3

Query: 399 PPSAHHGQKPPWIFHRSC*TPSKSRRTGSCQGPTTGRPGPEAPP 268
           PPS     +PPW F R    P  S++ GS   P    P P  PP
Sbjct: 312 PPSVQTPVRPPWYFQR---PPGPSQQPGSRPRPPAPPPAPPPPP 352

>SYNJ1_HUMAN (O43426) Synaptojanin-1 (EC 3.1.3.36) (Synaptic|
            inositol-1,4,5-trisphosphate 5-phosphatase 1)
          Length = 1575

 Score = 33.5 bits (75), Expect = 0.28
 Identities = 18/35 (51%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -3

Query: 342  TPSKSRRTGSCQGPTTGR-PGPEAPPRNGRATSRT 241
            +PS S RT  CQ PT    P P  P R  RA SRT
Sbjct: 1041 SPSSSPRTSPCQSPTISEGPVPSLPIRPSRAPSRT 1075

>UBE4B_HUMAN (O95155) Ubiquitin conjugation factor E4 B (Ubiquitin-fusion|
           degradation protein 2) (Homozygously deleted in
           neuroblastoma 1)
          Length = 1302

 Score = 32.0 bits (71), Expect = 0.82
 Identities = 30/103 (29%), Positives = 43/103 (41%)
 Frame = -3

Query: 426 LSHLWKSSFPPSAHHGQKPPWIFHRSC*TPSKSRRTGSCQGPTTGRPGPEAPPRNGRATS 247
           ++H W SS          PP +       P+ S R    Q P++   GP  PP +  ATS
Sbjct: 335 VTHPWASSGVSILSSSPSPPALASSPQAVPASSSR----QRPSS--TGPPLPPASPSATS 388

Query: 246 RTESG*TDHVM*ISHHLTPAVSAIGGMSGRSSGYCVYFFVS*C 118
           R  S         S  ++P++ A GG S   S Y  +F +  C
Sbjct: 389 RRPS---------SLRISPSLGASGGASNWDS-YSDHFTIETC 421

>SUMF2_MOUSE (Q8BPG6) Sulfatase-modifying factor 2 precursor|
           (C-alpha-formyglycine-generating enzyme 2)
          Length = 308

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = +1

Query: 256 PSVSWWCFGAGPTCCWSLAAACPPALAWRLTAPMKYPWWLLA-MVCAWRERRLP 414
           P+V WW     P   W   A     +  +L  P+ +  W  A   CAWR RRLP
Sbjct: 120 PAVHWW--QPVPKAFWRQPAGPGSGIREKLELPVVHVSWNDAGAYCAWRGRRLP 171

>SYNJ1_RAT (Q62910) Synaptojanin-1 (EC 3.1.3.36) (Synaptic|
            inositol-1,4,5-trisphosphate 5-phosphatase 1)
          Length = 1574

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 17/35 (48%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = -3

Query: 342  TPSKSRRTGSCQGPTTGR-PGPEAPPRNGRATSRT 241
            +PS S RT  CQ PT      P  P R  RA SRT
Sbjct: 1041 SPSSSPRTSPCQSPTAPEYSAPSLPIRPSRAPSRT 1075

>SYNJ1_MOUSE (Q8CHC4) Synaptojanin-1 (EC 3.1.3.36) (Synaptic|
            inositol-1,4,5-trisphosphate 5-phosphatase 1)
          Length = 1574

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 17/35 (48%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = -3

Query: 342  TPSKSRRTGSCQGPTTGR-PGPEAPPRNGRATSRT 241
            +PS S RT  CQ PT      P  P R  RA SRT
Sbjct: 1041 SPSSSPRTSPCQSPTVPEYSAPSLPIRPSRAPSRT 1075

>COX10_KLULA (Q6CTW6) Protoheme IX farnesyltransferase, mitochondrial precursor|
           (EC 2.5.1.-) (Heme O synthase)
          Length = 452

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = +1

Query: 304 SLAAACPPALAWRLTAPMKYP--WWLLAMVCAWR 399
           +L  A PP + W  ++P+ +P  W L  ++ AW+
Sbjct: 274 ALVGAIPPLMGWAASSPLSHPGAWCLAGLLYAWQ 307

>COX10_CANGA (Q6FUG4) Protoheme IX farnesyltransferase, mitochondrial precursor|
           (EC 2.5.1.-) (Heme O synthase)
          Length = 451

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +1

Query: 304 SLAAACPPALAWRLTAPMKYP--WWLLAMVCAWR 399
           +L  A PP + W   +P+ +P  W L  ++ AW+
Sbjct: 272 ALVGAIPPLMGWAAASPLTHPGSWCLAGLLYAWQ 305

>COX10_DEBHA (Q6BKW6) Protoheme IX farnesyltransferase, mitochondrial precursor|
           (EC 2.5.1.-) (Heme O synthase)
          Length = 462

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 10/34 (29%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = +1

Query: 304 SLAAACPPALAWRLTAPMKYP--WWLLAMVCAWR 399
           ++  A PP + W  ++P+ +P  W L  ++ AW+
Sbjct: 276 AIVGAIPPLMGWAASSPLDHPGAWCLAGLLYAWQ 309

>COX10_ASHGO (Q75F43) Protoheme IX farnesyltransferase, mitochondrial precursor|
           (EC 2.5.1.-) (Heme O synthase)
          Length = 435

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +1

Query: 250 RRPSVSWWCFGAGPTCCWSLAAACPPALAWRLTAPMKYP--WWLLAMVCAWR 399
           R+  ++ W FGA       +  A PP + W   +P+ +P  W L  ++ AW+
Sbjct: 247 RKHIINTW-FGA-------ITGAIPPLMGWAAASPLTHPGCWCLAGLLYAWQ 290

>RPC1_TRYBB (P08968) DNA-directed RNA polymerase III largest subunit (EC 2.7.7.6)|
          Length = 1530

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 19/91 (20%), Positives = 47/91 (51%), Gaps = 7/91 (7%)
 Frame = -2

Query: 406  VVPAKRTPWPEATMDISSELLDAKQEQEDRQLP------RTNNRSARPRSTTTKRKGDVQ 245
            ++P +   + EA ++   E L   +EQE R+        +TN+R +RPR+   +R   + 
Sbjct: 968  MLPTEGPSFVEACLNGDQEALKVCEEQESREDALHNSNGKTNDRESRPRTGRLRRAVLIS 1027

Query: 244  N*VRI-NRSCNVNLTSSYTRGICNRRHVRSI 155
            + V++ +R    ++   + + +  ++ +R++
Sbjct: 1028 HLVKVCSRKFKDDIQDFFVKKVREQQRIRNL 1058

>RBM6_HUMAN (P78332) RNA-binding protein 6 (RNA-binding motif protein 6)|
            (RNA-binding protein DEF-3) (Lung cancer antigen
            NY-LU-12) (Protein G16)
          Length = 1123

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
 Frame = -2

Query: 466  EARADSKFPQGWVIEPPLEVVVPAKRTPWPEATMDISSELL-------DAKQEQEDRQLP 308
            E  ++ K P   V + PL   V  + +P P   ++    LL       D ++E+E+ Q P
Sbjct: 865  ENASEGKAPAEDVFKKPLPPTVKKEESPPPPKVVNPLIGLLGEYGGDSDYEEEEEEEQTP 924

Query: 307  RTNNRSARP--RSTTTKRKGD 251
                R+A+P  R   TK++ +
Sbjct: 925  PPQPRTAQPQKREEQTKKENE 945

>RAB26_RAT (P51156) Ras-related protein Rab-26|
          Length = 257

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = -3

Query: 303 PTTGRPGPEAPPRNGRATSRTESG*T 226
           P T RPGPEAPP     + R   G T
Sbjct: 32  PRTARPGPEAPPNGPPQSGRPSLGGT 57

>NRFA_PENUR (Q92269) Nitrogen regulatory protein nrfA|
          Length = 865

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 318 GSCQGPTTGRPGPEAPPRNGRATS 247
           GS  GP T  P P  PP +G +++
Sbjct: 619 GSASGPPTNHPSPSTPPESGLSSA 642

>C6A18_DROME (Q9VB31) Probable cytochrome P450 6a18 (EC 1.14.-.-) (CYPVIA18)|
          Length = 507

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +1

Query: 244 SGRRPSVSWWCFGAGPTCCWSL 309
           S +RPSV+W  FG GP  C  L
Sbjct: 433 SAKRPSVAWLPFGEGPRNCIGL 454

>AREA_PENRO (O13508) Nitrogen regulatory protein areA (Nitrogen regulator nmc)|
          Length = 860

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 318 GSCQGPTTGRPGPEAPPRNGRATS 247
           GS  GP T  P P  PP +G +++
Sbjct: 614 GSASGPPTNHPSPSTPPESGLSSA 637

>COX10_YEAST (P21592) Protoheme IX farnesyltransferase, mitochondrial precursor|
           (EC 2.5.1.-) (Heme O synthase)
          Length = 462

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = +1

Query: 304 SLAAACPPALAWRLTAPMKYP--WWLLAMVCAWR 399
           +L    PP + W   +P+ +P  W L  ++ AW+
Sbjct: 281 ALVGMVPPLMGWAAASPLSHPGSWCLAGLLFAWQ 314


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,197,874
Number of Sequences: 219361
Number of extensions: 1562792
Number of successful extensions: 5295
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 4915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5281
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3072927439
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)