ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart06d05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AJ969064.1| Triticum aestivum mRNA for glycosyltransferase (... 589 e-165
2emb|AJ969059.1| Hordeum vulgare mRNA for glycosyltransferase (pg... 551 e-154
3emb|AJ969062.1| Saccharum officinarum mRNA for glycosyltransfera... 135 1e-28
4gb|AY108421.1| Zea mays PCO098381 mRNA sequence 98 3e-17
5dbj|AK066791.1| Oryza sativa (japonica cultivar-group) cDNA clon... 76 1e-10
6dbj|AB054003.1| Oryza sativa (japonica cultivar-group) mRNA for ... 76 1e-10
7dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 68 3e-08
8dbj|AP003935.3| Oryza sativa (japonica cultivar-group) genomic D... 68 3e-08
9dbj|AP005395.3| Oryza sativa (japonica cultivar-group) genomic D... 68 3e-08
10ref|XM_518134.1| PREDICTED: Pan troglodytes LOC462309 (LOC462309... 46 0.10
11gb|AC145098.2| Homo sapiens chromosome 5 clone RP11-1334A24, com... 46 0.10
12dbj|AK097259.1| Homo sapiens cDNA FLJ39940 fis, clone SPLEN2022522 46 0.10
13gb|AC090063.4| Homo sapiens chromosome 5 clone CTB-22D11, comple... 46 0.10
14gb|AC008404.8| Homo sapiens chromosome 5 clone CTC-273K4, comple... 46 0.10
15gb|AC138865.3| Homo sapiens chromosome 5 clone RP11-1407J20, com... 46 0.10
16gb|AC140179.3| Homo sapiens chromosome 5 clone RP11-933K12, comp... 46 0.10
17gb|AC139795.3| Homo sapiens chromosome 5 clone RP11-1277A3, comp... 46 0.10
18gb|M93690.1|MSQRT1RET Anopheles gambiae RT1 retroposon, complete... 44 0.41
19gb|AC012173.9| Homo sapiens chromosome 16 clone RP11-152P23, com... 42 1.6
20gb|AC161376.2| Mus musculus BAC clone RP23-264M10 from chromosom... 40 6.3
21gb|AC105066.12| Mus musculus chromosome 8, clone RP23-158A22, co... 40 6.3
22gb|AC124529.3| Mus musculus BAC clone RP23-411I8 from chromosome... 40 6.3
23emb|AL020993.1|HS5O6 Human DNA sequence from clone RP1-5O6 on ch... 40 6.3
24gb|AC022046.11| Homo sapiens chromosome , clone RP11-13L22, comp... 40 6.3
25emb|BX511148.7| Zebrafish DNA sequence from clone DKEY-174N20 in... 40 6.3
26gb|AC102341.10| Mus musculus chromosome 8, clone RP23-214E1, com... 40 6.3
27dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 6.3
28gb|AC053467.1|AC053467 Homo sapiens chromosome 19, cosmid R28310... 40 6.3
29emb|AL663098.8| Mouse DNA sequence from clone RP23-24L23 on chro... 40 6.3
30gb|AC151909.5| Mus musculus BAC clone RP23-60H14 from chromosome... 40 6.3
31gb|AC147152.3| Mus musculus BAC clone RP24-257J19 from 3, comple... 40 6.3 
>emb|AJ969064.1| Triticum aestivum mRNA for glycosyltransferase (pglcat8 gene)
          Length = 1945

 Score =  589 bits (297), Expect = e-165
 Identities = 371/398 (93%)
 Strand = Plus / Minus

                                                                        
Query: 69   agaagacatatccccagcacgagggcgtcgtcgttgccaccagagcaaaacatcaggaaa 128
            |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct: 1937 agaagacatatccccagcacgaggccgtcgtcgttaccaccagagcaaaacatcaggaaa 1878

                                                                        
Query: 129  cnnnnnnntaaacacaatacccactagatcgaccggacatgcctcctattgcagataccg 188
            |       ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1877 caaaaaaataaacacaatacccactagatcgactggacatgcctcctattgcagataccg 1818

                                                                        
Query: 189  cgggtgtaagatgatgtgagatttacattacatgatctgtttatcctgactcagttctgg 248
            |||||||||| || |||||||| ||||||||||| ||||||||||||| ||||||| |||
Sbjct: 1817 cgggtgtaaggtggtgtgagatgtacattacatggtctgtttatcctgcctcagttgtgg 1758

                                                                        
Query: 249  acgtcgcccttccgtttcgtggtggtgcttcggggccgggccgacctgttgttggtcctt 308
            |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1757 acgtcgcccttccgcttcgtggtggtgcttcggggccgggctgacctgttgttggtcctt 1698

                                                                        
Query: 309  ggcagctgcctgtcctcctgctcttgcttggcgtctaacagctccgatgaaatatccatg 368
            |||||||||||||||||||||||||||||||| || |||| ||||||||||| |||||||
Sbjct: 1697 ggcagctgcctgtcctcctgctcttgcttggcatccaacatctccgatgaaacatccatg 1638

                                                                        
Query: 369  gtggcttctggccatggtgtgcgcttggcgggaacgacgacttccaaaggtggctcaatc 428
            |||| |||||||||||||||||||||||||||||| ||||| |||| |||||||||||||
Sbjct: 1637 gtggtttctggccatggtgtgcgcttggcgggaacaacgacctccagaggtggctcaatc 1578

                                                  
Query: 429  acccacccttgtggaaacttgctatcggcccgggcttc 466
            ||||||||||||||||||||||| ||||||||||||||
Sbjct: 1577 acccacccttgtggaaacttgctgtcggcccgggcttc 1540
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>emb|AJ969059.1| Hordeum vulgare mRNA for glycosyltransferase (pglcat8 gene)
          Length = 1627

 Score =  551 bits (278), Expect = e-154
 Identities = 278/278 (100%)
 Strand = Plus / Minus

                                                                        
Query: 193  tgtaagatgatgtgagatttacattacatgatctgtttatcctgactcagttctggacgt 252
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1627 tgtaagatgatgtgagatttacattacatgatctgtttatcctgactcagttctggacgt 1568

                                                                        
Query: 253  cgcccttccgtttcgtggtggtgcttcggggccgggccgacctgttgttggtccttggca 312
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1567 cgcccttccgtttcgtggtggtgcttcggggccgggccgacctgttgttggtccttggca 1508

                                                                        
Query: 313  gctgcctgtcctcctgctcttgcttggcgtctaacagctccgatgaaatatccatggtgg 372
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1507 gctgcctgtcctcctgctcttgcttggcgtctaacagctccgatgaaatatccatggtgg 1448

                                                                        
Query: 373  cttctggccatggtgtgcgcttggcgggaacgacgacttccaaaggtggctcaatcaccc 432
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1447 cttctggccatggtgtgcgcttggcgggaacgacgacttccaaaggtggctcaatcaccc 1388

                                                  
Query: 433  acccttgtggaaacttgctatcggcccgggcttcgaca 470
            ||||||||||||||||||||||||||||||||||||||
Sbjct: 1387 acccttgtggaaacttgctatcggcccgggcttcgaca 1350
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>emb|AJ969062.1| Saccharum officinarum mRNA for glycosyltransferase (pglcat8 gene)
          Length = 2239

 Score =  135 bits (68), Expect = 1e-28
 Identities = 134/156 (85%)
 Strand = Plus / Minus

                                                                        
Query: 311  cagctgcctgtcctcctgctcttgcttggcgtctaacagctccgatgaaatatccatggt 370
            |||| |||| |||||||||||||||||| |||| |||| ||| |||| ||  ||  ||||
Sbjct: 1659 cagccgcctatcctcctgctcttgcttgtcgtccaacaactcagatggaagctcggtggt 1600

                                                                        
Query: 371  ggcttctggccatggtgtgcgcttggcgggaacgacgacttccaaaggtggctcaatcac 430
            || ||| |||||||| |||||||| || || ||||| |||||||||||||||||||| ||
Sbjct: 1599 ggtttcaggccatggagtgcgctttgcagggacgacaacttccaaaggtggctcaattac 1540

                                                
Query: 431  ccacccttgtggaaacttgctatcggcccgggcttc 466
            ||||||||| |||||||||||||| ||||| |||||
Sbjct: 1539 ccacccttgaggaaacttgctatcagcccgtgcttc 1504



 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 251  gtcgcccttccgtttcgtggtg 272
            ||||||||||||||||||||||
Sbjct: 1713 gtcgcccttccgtttcgtggtg 1692
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>gb|AY108421.1| Zea mays PCO098381 mRNA sequence
          Length = 846

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 79/89 (88%)
 Strand = Plus / Minus

                                                                       
Query: 378 ggccatggtgtgcgcttggcgggaacgacgacttccaaaggtggctcaatcacccaccct 437
           |||||||| |||||||| || || || ||||||||||||||||||||||| |||||||||
Sbjct: 458 ggccatggagtgcgctttgcagggacaacgacttccaaaggtggctcaattacccaccct 399

                                        
Query: 438 tgtggaaacttgctatcggcccgggcttc 466
           |  |||||||||||||| ||||| |||||
Sbjct: 398 tcaggaaacttgctatcagcccgtgcttc 370
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>dbj|AK066791.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013084K17, full
           insert sequence
          Length = 605

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 65/74 (87%)
 Strand = Plus / Minus

                                                                       
Query: 378 ggccatggtgtgcgcttggcgggaacgacgacttccaaaggtggctcaatcacccaccct 437
           |||||||| ||||||||||||||||| || |  ||||||||||||||||| |||||||| 
Sbjct: 239 ggccatggggtgcgcttggcgggaacaactatgtccaaaggtggctcaattacccacccc 180

                         
Query: 438 tgtggaaacttgct 451
           || ||||| |||||
Sbjct: 179 tgaggaaatttgct 166
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>dbj|AB054003.1| Oryza sativa (japonica cultivar-group) mRNA for
           UDP-glucuronyltransferase-l, complete cds
          Length = 1200

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 65/74 (87%)
 Strand = Plus / Minus

                                                                       
Query: 378 ggccatggtgtgcgcttggcgggaacgacgacttccaaaggtggctcaatcacccaccct 437
           |||||||| ||||||||||||||||| || |  ||||||||||||||||| |||||||| 
Sbjct: 754 ggccatggggtgcgcttggcgggaacaactatgtccaaaggtggctcaattacccacccc 695

                         
Query: 438 tgtggaaacttgct 451
           || ||||| |||||
Sbjct: 694 tgaggaaatttgct 681
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 52/58 (89%)
 Strand = Plus / Minus

                                                                          
Query: 378      ggccatggtgtgcgcttggcgggaacgacgacttccaaaggtggctcaatcacccacc 435
                |||||||| ||||||||||||||||| || |  ||||||||||||||||| |||||||
Sbjct: 28314375 ggccatggggtgcgcttggcgggaacaactatgtccaaaggtggctcaattacccacc 28314318
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>dbj|AP003935.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0661G04
          Length = 157292

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 52/58 (89%)
 Strand = Plus / Minus

                                                                       
Query: 378   ggccatggtgtgcgcttggcgggaacgacgacttccaaaggtggctcaatcacccacc 435
             |||||||| ||||||||||||||||| || |  ||||||||||||||||| |||||||
Sbjct: 26953 ggccatggggtgcgcttggcgggaacaactatgtccaaaggtggctcaattacccacc 26896
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>dbj|AP005395.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0623A10
          Length = 156517

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 52/58 (89%)
 Strand = Plus / Minus

                                                                        
Query: 378    ggccatggtgtgcgcttggcgggaacgacgacttccaaaggtggctcaatcacccacc 435
              |||||||| ||||||||||||||||| || |  ||||||||||||||||| |||||||
Sbjct: 112404 ggccatggggtgcgcttggcgggaacaactatgtccaaaggtggctcaattacccacc 112347
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>ref|XM_518134.1| PREDICTED: Pan troglodytes LOC462309 (LOC462309), mRNA
          Length = 2299

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 298 tgttggtccttggcagctgcctg 320
           |||||||||||||||||||||||
Sbjct: 278 tgttggtccttggcagctgcctg 256
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>gb|AC145098.2| Homo sapiens chromosome 5 clone RP11-1334A24, complete sequence
          Length = 171897

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 298    tgttggtccttggcagctgcctg 320
              |||||||||||||||||||||||
Sbjct: 146614 tgttggtccttggcagctgcctg 146636
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>dbj|AK097259.1| Homo sapiens cDNA FLJ39940 fis, clone SPLEN2022522
          Length = 3181

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 298 tgttggtccttggcagctgcctg 320
           |||||||||||||||||||||||
Sbjct: 949 tgttggtccttggcagctgcctg 927
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>gb|AC090063.4| Homo sapiens chromosome 5 clone CTB-22D11, complete sequence
          Length = 173391

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 298   tgttggtccttggcagctgcctg 320
             |||||||||||||||||||||||
Sbjct: 36313 tgttggtccttggcagctgcctg 36291
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>gb|AC008404.8| Homo sapiens chromosome 5 clone CTC-273K4, complete sequence
          Length = 89171

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 298   tgttggtccttggcagctgcctg 320
             |||||||||||||||||||||||
Sbjct: 81087 tgttggtccttggcagctgcctg 81065
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>gb|AC138865.3| Homo sapiens chromosome 5 clone RP11-1407J20, complete sequence
          Length = 197972

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 298    tgttggtccttggcagctgcctg 320
              |||||||||||||||||||||||
Sbjct: 101835 tgttggtccttggcagctgcctg 101857
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>gb|AC140179.3| Homo sapiens chromosome 5 clone RP11-933K12, complete sequence
          Length = 215808

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 298    tgttggtccttggcagctgcctg 320
              |||||||||||||||||||||||
Sbjct: 167692 tgttggtccttggcagctgcctg 167714
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>gb|AC139795.3| Homo sapiens chromosome 5 clone RP11-1277A3, complete sequence
          Length = 172276

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 298   tgttggtccttggcagctgcctg 320
             |||||||||||||||||||||||
Sbjct: 31641 tgttggtccttggcagctgcctg 31663
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>gb|M93690.1|MSQRT1RET Anopheles gambiae RT1 retroposon, complete sequence
          Length = 8071

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 241  agttctggacgtcgcccttccg 262
            ||||||||||||||||||||||
Sbjct: 6241 agttctggacgtcgcccttccg 6262
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>gb|AC012173.9| Homo sapiens chromosome 16 clone RP11-152P23, complete sequence
          Length = 74925

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 415   aaggtggctcaatcacccacc 435
             |||||||||||||||||||||
Sbjct: 37130 aaggtggctcaatcacccacc 37110
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>gb|AC161376.2| Mus musculus BAC clone RP23-264M10 from chromosome 16, complete
             sequence
          Length = 199086

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 368   ggtggcttctggccatggtg 387
             ||||||||||||||||||||
Sbjct: 68312 ggtggcttctggccatggtg 68331
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>gb|AC105066.12| Mus musculus chromosome 8, clone RP23-158A22, complete sequence
          Length = 238527

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 315    tgcctgtcctcctgctcttg 334
              ||||||||||||||||||||
Sbjct: 234428 tgcctgtcctcctgctcttg 234409
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>gb|AC124529.3| Mus musculus BAC clone RP23-411I8 from chromosome 3, complete sequence
          Length = 192341

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 210    tttacattacatgatctgtt 229
              ||||||||||||||||||||
Sbjct: 152805 tttacattacatgatctgtt 152786
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>emb|AL020993.1|HS5O6 Human DNA sequence from clone RP1-5O6 on chromosome 22q12, complete
              sequence
          Length = 106008

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 313    gctgcctgtcctcctgctct 332
              ||||||||||||||||||||
Sbjct: 104114 gctgcctgtcctcctgctct 104133
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>gb|AC022046.11| Homo sapiens chromosome , clone RP11-13L22, complete sequence
          Length = 169553

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 214    cattacatgatctgtttatc 233
              ||||||||||||||||||||
Sbjct: 153926 cattacatgatctgtttatc 153907
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>emb|BX511148.7| Zebrafish DNA sequence from clone DKEY-174N20 in linkage group 5,
              complete sequence
          Length = 162495

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 44     tacagacaacgaaacggtctccta 67
              ||||||||| ||||||||||||||
Sbjct: 148228 tacagacaaggaaacggtctccta 148251
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>gb|AC102341.10| Mus musculus chromosome 8, clone RP23-214E1, complete sequence
          Length = 187701

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 315    tgcctgtcctcctgctcttg 334
              ||||||||||||||||||||
Sbjct: 176644 tgcctgtcctcctgctcttg 176663
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 272     ggtgcttcggggccgggccg 291
               ||||||||||||||||||||
Sbjct: 6029672 ggtgcttcggggccgggccg 6029691
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>gb|AC053467.1|AC053467 Homo sapiens chromosome 19, cosmid R28310 (LLNL-R_243G6), complete
             sequence
          Length = 41407

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 370   tggcttctggccatggtgtg 389
             ||||||||||||||||||||
Sbjct: 24667 tggcttctggccatggtgtg 24648
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>emb|AL663098.8| Mouse DNA sequence from clone RP23-24L23 on chromosome X, complete
              sequence
          Length = 227133

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 418    gtggctcaatcacccaccct 437
              ||||||||||||||||||||
Sbjct: 150378 gtggctcaatcacccaccct 150397
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>gb|AC151909.5| Mus musculus BAC clone RP23-60H14 from chromosome 8, complete sequence
          Length = 208855

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 315    tgcctgtcctcctgctcttg 334
              ||||||||||||||||||||
Sbjct: 116837 tgcctgtcctcctgctcttg 116856
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>gb|AC147152.3| Mus musculus BAC clone RP24-257J19 from 3, complete sequence
          Length = 186839

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 210    tttacattacatgatctgtt 229
              ||||||||||||||||||||
Sbjct: 103672 tttacattacatgatctgtt 103691


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,274,930
Number of Sequences: 3902068
Number of extensions: 3274930
Number of successful extensions: 64048
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 63939
Number of HSP's gapped (non-prelim): 108
length of query: 470
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 448
effective length of database: 17,147,199,772
effective search space: 7681945497856
effective search space used: 7681945497856
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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