ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart06d02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1WAP_MOUSE (P01173) Whey acidic protein precursor (WAP) 28 5.2
2VLDLR_CHICK (P98165) Very low-density lipoprotein receptor precu... 28 6.8

>WAP_MOUSE (P01173) Whey acidic protein precursor (WAP)|
          Length = 134

 Score = 28.5 bits (62), Expect = 5.2
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 133 CSSGIYCANCNCLLKCSPP 77
           CS  + C N +C++ C+PP
Sbjct: 109 CSGNMKCCNVDCVMTCTPP 127



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>VLDLR_CHICK (P98165) Very low-density lipoprotein receptor precursor (VLDL|
           receptor) (VLDL-R) (Vitellogenin receptor) (VTG
           receptor)
          Length = 863

 Score = 28.1 bits (61), Expect = 6.8
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -3

Query: 148 SGLPGCSSGIYCANCNCLLKCS-PPKFSL*CGPC 50
           +G+  C  G   ANCN +++CS P KF    G C
Sbjct: 316 NGVRDCLDGTDEANCNNVIQCSGPGKFKCRSGEC 349


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,003,501
Number of Sequences: 219361
Number of extensions: 303943
Number of successful extensions: 733
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 80,573,946
effective HSP length: 30
effective length of database: 73,993,116
effective search space used: 1775834784
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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