ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart06d01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AF225922.1|AF225922 Oryza sativa secretory carrier membrane p... 182 6e-43
2dbj|AK068498.1| Oryza sativa (japonica cultivar-group) cDNA clon... 182 6e-43
3ref|XM_463469.1| Oryza sativa (japonica cultivar-group), predic... 174 1e-40
4dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 115 1e-22
5dbj|AP003224.3| Oryza sativa (japonica cultivar-group) genomic D... 115 1e-22
6dbj|AK104049.1| Oryza sativa (japonica cultivar-group) cDNA clon... 113 5e-22
7dbj|AK068335.1| Oryza sativa (japonica cultivar-group) cDNA clon... 113 5e-22
8gb|AY106421.1| Zea mays PCO138756 mRNA sequence 105 1e-19
9gb|BT018671.1| Zea mays clone EL01N0510D10.d mRNA sequence 90 7e-15
10gb|BT018150.1| Zea mays clone EL01N0555F10.c mRNA sequence 90 7e-15
11gb|AY110427.1| Zea mays CL24382_1 mRNA sequence 90 7e-15
12ref|NM_186334.2| Oryza sativa (japonica cultivar-group), mRNA 78 3e-11
13ref|XM_506412.1| PREDICTED Oryza sativa (japonica cultivar-group... 78 3e-11
14dbj|AK102110.1| Oryza sativa (japonica cultivar-group) cDNA clon... 78 3e-11
15dbj|AK061125.1| Oryza sativa (japonica cultivar-group) cDNA clon... 78 3e-11
16gb|AC130597.2| Oryza sativa (japonica cultivar-group) chromosome... 70 6e-09
17gb|AC135917.2| Oryza sativa (japonica cultivar-group) chromosome... 70 6e-09
18dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 70 6e-09
19dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 60 6e-06
20dbj|AP003705.3| Oryza sativa (japonica cultivar-group) genomic D... 60 6e-06
21gb|BT014087.1| Lycopersicon esculentum clone 133191R, mRNA sequence 58 2e-05
22gb|AF018093.1|AF018093 Pisum sativum similarity to SCAMP37 (psam... 52 0.001
23gb|BT013104.1| Lycopersicon esculentum clone 114390R, mRNA sequence 48 0.022
24ref|NM_100990.3| Arabidopsis thaliana carrier AT1G11180 mRNA, co... 46 0.088
25gb|AC007259.4| Arabidopsis thaliana chromosome I BAC T28P6 genom... 46 0.088
26emb|BX817123.1|CNS0ABQO Arabidopsis thaliana Full-length cDNA Co... 46 0.088
27emb|AL022164.1|HS581F7 Human DNA sequence from clone RP4-581F7 o... 44 0.35
28gb|AC020602.6| Homo sapiens BAC clone RP11-461M18 from 2, comple... 44 0.35
29emb|CT574563.2| Pan troglodytes chromosome X clone CH251-7J11 ma... 44 0.35
30emb|AL357506.10| Human DNA sequence from clone RP11-327K21 on ch... 42 1.4
31emb|AL139042.15| Human DNA sequence from clone RP11-459O1 on chr... 42 1.4
32gb|AF191071.3| Homo sapiens chromosome 8 clone GS1-388D06 map 8u... 42 1.4
33gb|AC102103.10| Mus musculus chromosome 15, clone RP23-82K1, com... 40 5.4
34ref|XM_751831.1| Ustilago maydis 521 hypothetical protein (UM007... 40 5.4
35emb|CT009681.2| Pan troglodytes chromosome X BAC PTB-134F20, com... 40 5.4
36gb|AC103363.6| Mus musculus chromosome 17, clone RP24-247H9, com... 40 5.4
37emb|AL593853.11| Mouse DNA sequence from clone RP23-199A2 on chr... 40 5.4
38gb|AC044840.9| Homo sapiens chromosome , clone RP11-30L3, comple... 40 5.4
39emb|BX571829.7| Zebrafish DNA sequence from clone DKEY-256M7 in ... 40 5.4
40gb|AC112722.4| Homo sapiens BAC clone RP11-714G18 from 4, comple... 40 5.4
41gb|AC016866.12| Homo sapiens chromosome 18, clone RP11-15F12, co... 40 5.4
42gb|AC158970.3| Mus musculus chromosome 15, clone RP24-186A9, com... 40 5.4
43gb|AC108940.3| Homo sapiens BAC clone RP11-728F4 from 2, complet... 40 5.4
44gb|AC008073.4| Homo sapiens BAC clone RP11-507M3 from 2, complet... 40 5.4
45dbj|BS000044.1| Pan troglodytes chromosome 22 clone:RP43-014B20,... 40 5.4
46dbj|AK129268.1| Mus musculus mRNA for mKIAA1031 protein 40 5.4
47gb|AC113178.10| Mus musculus chromosome 15, clone RP23-395K11, c... 40 5.4
48gb|AC147820.2| Xenopus tropicalis clone CH216-11B22, complete se... 40 5.4
49dbj|AP002905.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 40 5.4 
>gb|AF225922.1|AF225922 Oryza sativa secretory carrier membrane protein (SC) mRNA, complete
           cds
          Length = 1047

 Score =  182 bits (92), Expect = 6e-43
 Identities = 152/172 (88%)
 Strand = Plus / Minus

                                                                       
Query: 221 tctatcaaaaggccgatctcatggcaccacgtgctgcctcttgtctcaactgagcagcct 280
           |||||||||||||||||||||| |||||||| ||||||||  || ||| || ||||||||
Sbjct: 881 tctatcaaaaggccgatctcatagcaccacgagctgcctcacgtttcatctcagcagcct 822

                                                                       
Query: 281 ttccacttccacggaagtacatgtatacttgctggatgaccacaatgctgagcagtgctt 340
           | |||||||||||||| ||||||||||||||||||||||| |||| |||||| |||| ||
Sbjct: 821 tcccacttccacggaaatacatgtatacttgctggatgacaacaacgctgagtagtgatt 762

                                                               
Query: 341 caagacagaacagcccgaatccaacaaagtaaaatattcccacaataacatt 392
           |||| |||||||| || |||||||  ||||||||||| ||||||||| ||||
Sbjct: 761 caaggcagaacagtccaaatccaatgaagtaaaatatccccacaatagcatt 710
to top
>dbj|AK068498.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013157H06, full
            insert sequence
          Length = 1353

 Score =  182 bits (92), Expect = 6e-43
 Identities = 152/172 (88%)
 Strand = Plus / Minus

                                                                        
Query: 221  tctatcaaaaggccgatctcatggcaccacgtgctgcctcttgtctcaactgagcagcct 280
            |||||||||||||||||||||| |||||||| ||||||||  || ||| || ||||||||
Sbjct: 1020 tctatcaaaaggccgatctcatagcaccacgagctgcctcacgtttcatctcagcagcct 961

                                                                        
Query: 281  ttccacttccacggaagtacatgtatacttgctggatgaccacaatgctgagcagtgctt 340
            | |||||||||||||| ||||||||||||||||||||||| |||| |||||| |||| ||
Sbjct: 960  tcccacttccacggaaatacatgtatacttgctggatgacaacaacgctgagtagtgatt 901

                                                                
Query: 341  caagacagaacagcccgaatccaacaaagtaaaatattcccacaataacatt 392
            |||| |||||||| || |||||||  ||||||||||| ||||||||| ||||
Sbjct: 900  caaggcagaacagtccaaatccaatgaagtaaaatatccccacaatagcatt 849
to top
>ref|XM_463469.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 861

 Score =  174 bits (88), Expect = 1e-40
 Identities = 148/168 (88%)
 Strand = Plus / Minus

                                                                       
Query: 225 tcaaaaggccgatctcatggcaccacgtgctgcctcttgtctcaactgagcagcctttcc 284
           |||||||||||||||||| |||||||| ||||||||  || ||| || ||||||||| ||
Sbjct: 861 tcaaaaggccgatctcatagcaccacgagctgcctcacgtttcatctcagcagccttccc 802

                                                                       
Query: 285 acttccacggaagtacatgtatacttgctggatgaccacaatgctgagcagtgcttcaag 344
           |||||||||||| ||||||||||||||||||||||| |||| |||||| |||| ||||||
Sbjct: 801 acttccacggaaatacatgtatacttgctggatgacaacaacgctgagtagtgattcaag 742

                                                           
Query: 345 acagaacagcccgaatccaacaaagtaaaatattcccacaataacatt 392
            |||||||| || |||||||  ||||||||||| ||||||||| ||||
Sbjct: 741 gcagaacagtccaaatccaatgaagtaaaatatccccacaatagcatt 694
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  115 bits (58), Expect = 1e-22
 Identities = 85/94 (90%)
 Strand = Plus / Minus

                                                                            
Query: 221      tctatcaaaaggccgatctcatggcaccacgtgctgcctcttgtctcaactgagcagcct 280
                |||||||||||||||||||||| |||||||| ||||||||  || ||| || ||||||||
Sbjct: 33057634 tctatcaaaaggccgatctcatagcaccacgagctgcctcacgtttcatctcagcagcct 33057575

                                                  
Query: 281      ttccacttccacggaagtacatgtatacttgctg 314
                | |||||||||||||| |||||||||||||||||
Sbjct: 33057574 tcccacttccacggaaatacatgtatacttgctg 33057541



 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 57/66 (86%)
 Strand = Plus / Minus

                                                                            
Query: 312      ctggatgaccacaatgctgagcagtgcttcaagacagaacagcccgaatccaacaaagta 371
                ||||||||| |||| |||||| |||| |||||| |||||||| || |||||||  |||||
Sbjct: 33057273 ctggatgacaacaacgctgagtagtgattcaaggcagaacagtccaaatccaatgaagta 33057214

                      
Query: 372      aaatat 377
                ||||||
Sbjct: 33057213 aaatat 33057208
to top
>dbj|AP003224.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0010B10
          Length = 155263

 Score =  115 bits (58), Expect = 1e-22
 Identities = 85/94 (90%)
 Strand = Plus / Minus

                                                                          
Query: 221    tctatcaaaaggccgatctcatggcaccacgtgctgcctcttgtctcaactgagcagcct 280
              |||||||||||||||||||||| |||||||| ||||||||  || ||| || ||||||||
Sbjct: 123862 tctatcaaaaggccgatctcatagcaccacgagctgcctcacgtttcatctcagcagcct 123803

                                                
Query: 281    ttccacttccacggaagtacatgtatacttgctg 314
              | |||||||||||||| |||||||||||||||||
Sbjct: 123802 tcccacttccacggaaatacatgtatacttgctg 123769



 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 57/66 (86%)
 Strand = Plus / Minus

                                                                          
Query: 312    ctggatgaccacaatgctgagcagtgcttcaagacagaacagcccgaatccaacaaagta 371
              ||||||||| |||| |||||| |||| |||||| |||||||| || |||||||  |||||
Sbjct: 123501 ctggatgacaacaacgctgagtagtgattcaaggcagaacagtccaaatccaatgaagta 123442

                    
Query: 372    aaatat 377
              ||||||
Sbjct: 123441 aaatat 123436
to top
>dbj|AK104049.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-022-H12, full
           insert sequence
          Length = 1351

 Score =  113 bits (57), Expect = 5e-22
 Identities = 108/125 (86%)
 Strand = Plus / Minus

                                                                       
Query: 280 tttccacttccacggaagtacatgtatacttgctggatgaccacaatgctgagcagtgct 339
           ||||||||||||||||||||||||||||||||||| |||||  ||||||| |||||||  
Sbjct: 905 tttccacttccacggaagtacatgtatacttgctgaatgacaccaatgctcagcagtgac 846

                                                                       
Query: 340 tcaagacagaacagcccgaatccaacaaagtaaaatattcccacaataacattcctgcct 399
           ||||| ||||| |  || || || |||||||||||||| ||||| ||| || ||||||||
Sbjct: 845 tcaaggcagaataatccaaacccgacaaagtaaaatatccccactatagcactcctgcct 786

                
Query: 400 atgac 404
           |||||
Sbjct: 785 atgac 781
to top
>dbj|AK068335.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013149D04, full
           insert sequence
          Length = 1353

 Score =  113 bits (57), Expect = 5e-22
 Identities = 108/125 (86%)
 Strand = Plus / Minus

                                                                       
Query: 280 tttccacttccacggaagtacatgtatacttgctggatgaccacaatgctgagcagtgct 339
           ||||||||||||||||||||||||||||||||||| |||||  ||||||| |||||||  
Sbjct: 907 tttccacttccacggaagtacatgtatacttgctgaatgacaccaatgctcagcagtgac 848

                                                                       
Query: 340 tcaagacagaacagcccgaatccaacaaagtaaaatattcccacaataacattcctgcct 399
           ||||| ||||| |  || || || |||||||||||||| ||||| ||| || ||||||||
Sbjct: 847 tcaaggcagaataatccaaacccgacaaagtaaaatatccccactatagcactcctgcct 788

                
Query: 400 atgac 404
           |||||
Sbjct: 787 atgac 783
to top
>gb|AY106421.1| Zea mays PCO138756 mRNA sequence
          Length = 1421

 Score =  105 bits (53), Expect = 1e-19
 Identities = 134/161 (83%)
 Strand = Plus / Minus

                                                                       
Query: 244 gcaccacgtgctgcctcttgtctcaactgagcagcctttccacttccacggaagtacatg 303
           |||| ||||||||||||  || ||| ||  ||||| ||||||||||||||||| ||||||
Sbjct: 933 gcactacgtgctgcctcacgtttcatctctgcagcttttccacttccacggaaatacatg 874

                                                                       
Query: 304 tatacttgctggatgaccacaatgctgagcagtgcttcaagacagaacagcccgaatcca 363
           || |||||||| |||||  | ||||| || |||| |||||| |||||||  || ||||||
Sbjct: 873 tagacttgctgaatgacaccgatgctcagaagtgattcaaggcagaacaagccaaatcca 814

                                                    
Query: 364 acaaagtaaaatattcccacaataacattcctgcctatgac 404
           || ||||||||||| || |||||| ||||| ||| ||||||
Sbjct: 813 acgaagtaaaatatcccgacaatagcattcttgcttatgac 773
to top
>gb|BT018671.1| Zea mays clone EL01N0510D10.d mRNA sequence
          Length = 1302

 Score = 89.7 bits (45), Expect = 7e-15
 Identities = 132/161 (81%)
 Strand = Plus / Minus

                                                                       
Query: 244 gcaccacgtgctgcctcttgtctcaactgagcagcctttccacttccacggaagtacatg 303
           |||| ||||||||||||  || ||| ||  ||||| ||||||||| || |||| ||||||
Sbjct: 879 gcactacgtgctgcctcacgtttcatctctgcagcttttccacttacagggaaatacatg 820

                                                                       
Query: 304 tatacttgctggatgaccacaatgctgagcagtgcttcaagacagaacagcccgaatcca 363
           || |||||||| |||||  | ||||| || |||| |||||| |||||||  || ||||||
Sbjct: 819 tagacttgctgaatgacaccgatgctcagaagtgattcaaggcagaacaagccaaatcca 760

                                                    
Query: 364 acaaagtaaaatattcccacaataacattcctgcctatgac 404
           || ||||||||||| || |||||| ||||| ||| ||||||
Sbjct: 759 acgaagtaaaatatcccgacaatagcattcttgcttatgac 719
to top
>gb|BT018150.1| Zea mays clone EL01N0555F10.c mRNA sequence
          Length = 1189

 Score = 89.7 bits (45), Expect = 7e-15
 Identities = 57/61 (93%)
 Strand = Plus / Minus

                                                                       
Query: 274 gcagcctttccacttccacggaagtacatgtatacttgctggatgaccacaatgctgagc 333
           |||||||||||||||||||||||||||||||| |||||||||||||||   |||||||||
Sbjct: 882 gcagcctttccacttccacggaagtacatgtacacttgctggatgacccagatgctgagc 823

            
Query: 334 a 334
           |
Sbjct: 822 a 822
to top
>gb|AY110427.1| Zea mays CL24382_1 mRNA sequence
          Length = 684

 Score = 89.7 bits (45), Expect = 7e-15
 Identities = 57/61 (93%)
 Strand = Plus / Plus

                                                                       
Query: 274 gcagcctttccacttccacggaagtacatgtatacttgctggatgaccacaatgctgagc 333
           |||||||||||||||||||||||||||||||| |||||||||||||||   |||||||||
Sbjct: 377 gcagcctttccacttccacggaagtacatgtacacttgctggatgacccagatgctgagc 436

            
Query: 334 a 334
           |
Sbjct: 437 a 437
to top
>ref|NM_186334.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1184

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 84/99 (84%)
 Strand = Plus / Minus

                                                                       
Query: 273 agcagcctttccacttccacggaagtacatgtatacttgctggatgaccacaatgctgag 332
           |||||| ||||||||||| |||||||||||||| ||||||||||| |||   ||||||||
Sbjct: 959 agcagcttttccacttcctcggaagtacatgtacacttgctggataacccagatgctgag 900

                                                  
Query: 333 cagtgcttcaagacagaacagcccgaatccaacaaagta 371
           || || ||| |  |||||||  || ||||||||||||||
Sbjct: 899 caatgattcgacgcagaacaatccaaatccaacaaagta 861
to top
>ref|XM_506412.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1112_E08.118 mRNA
          Length = 1578

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 84/99 (84%)
 Strand = Plus / Minus

                                                                        
Query: 273  agcagcctttccacttccacggaagtacatgtatacttgctggatgaccacaatgctgag 332
            |||||| ||||||||||| |||||||||||||| ||||||||||| |||   ||||||||
Sbjct: 1175 agcagcttttccacttcctcggaagtacatgtacacttgctggataacccagatgctgag 1116

                                                   
Query: 333  cagtgcttcaagacagaacagcccgaatccaacaaagta 371
            || || ||| |  |||||||  || ||||||||||||||
Sbjct: 1115 caatgattcgacgcagaacaatccaaatccaacaaagta 1077
to top
>dbj|AK102110.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033084E14, full
            insert sequence
          Length = 1577

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 84/99 (84%)
 Strand = Plus / Minus

                                                                        
Query: 273  agcagcctttccacttccacggaagtacatgtatacttgctggatgaccacaatgctgag 332
            |||||| ||||||||||| |||||||||||||| ||||||||||| |||   ||||||||
Sbjct: 1174 agcagcttttccacttcctcggaagtacatgtacacttgctggataacccagatgctgag 1115

                                                   
Query: 333  cagtgcttcaagacagaacagcccgaatccaacaaagta 371
            || || ||| |  |||||||  || ||||||||||||||
Sbjct: 1114 caatgattcgacgcagaacaatccaaatccaacaaagta 1076
to top
>dbj|AK061125.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-207-G10, full
           insert sequence
          Length = 1184

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 84/99 (84%)
 Strand = Plus / Minus

                                                                       
Query: 273 agcagcctttccacttccacggaagtacatgtatacttgctggatgaccacaatgctgag 332
           |||||| ||||||||||| |||||||||||||| ||||||||||| |||   ||||||||
Sbjct: 959 agcagcttttccacttcctcggaagtacatgtacacttgctggataacccagatgctgag 900

                                                  
Query: 333 cagtgcttcaagacagaacagcccgaatccaacaaagta 371
           || || ||| |  |||||||  || ||||||||||||||
Sbjct: 899 caatgattcgacgcagaacaatccaaatccaacaaagta 861
to top
>gb|AC130597.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0017K09,
              complete sequence
          Length = 155525

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 35/35 (100%)
 Strand = Plus / Plus

                                                 
Query: 280    tttccacttccacggaagtacatgtatacttgctg 314
              |||||||||||||||||||||||||||||||||||
Sbjct: 131620 tttccacttccacggaagtacatgtatacttgctg 131654
to top
>gb|AC135917.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
            OSJNBb0048K05, complete sequence
          Length = 104254

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 35/35 (100%)
 Strand = Plus / Plus

                                               
Query: 280  tttccacttccacggaagtacatgtatacttgctg 314
            |||||||||||||||||||||||||||||||||||
Sbjct: 3781 tttccacttccacggaagtacatgtatacttgctg 3815
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 35/35 (100%)
 Strand = Plus / Plus

                                                   
Query: 280      tttccacttccacggaagtacatgtatacttgctg 314
                |||||||||||||||||||||||||||||||||||
Sbjct: 24617444 tttccacttccacggaagtacatgtatacttgctg 24617478
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 39/42 (92%)
 Strand = Plus / Plus

                                                          
Query: 273      agcagcctttccacttccacggaagtacatgtatacttgctg 314
                |||||| ||||||||||| |||||||||||||| ||||||||
Sbjct: 22574520 agcagcttttccacttcctcggaagtacatgtacacttgctg 22574561
to top
>dbj|AP003705.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1112_E08
          Length = 119926

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 39/42 (92%)
 Strand = Plus / Plus

                                                       
Query: 273   agcagcctttccacttccacggaagtacatgtatacttgctg 314
             |||||| ||||||||||| |||||||||||||| ||||||||
Sbjct: 54902 agcagcttttccacttcctcggaagtacatgtacacttgctg 54943
to top
>gb|BT014087.1| Lycopersicon esculentum clone 133191R, mRNA sequence
          Length = 1322

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                     
Query: 274  gcagcctttccacttccacggaagtacatgtatacttgctg 314
            ||||||||||||||||| ||||| |||||||| ||||||||
Sbjct: 1055 gcagcctttccacttccgcggaaatacatgtagacttgctg 1015
to top
>gb|AF018093.1|AF018093 Pisum sativum similarity to SCAMP37 (psam2) mRNA, complete cds
          Length = 1402

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 53/62 (85%)
 Strand = Plus / Minus

                                                                        
Query: 289  ccacggaagtacatgtatacttgctggatgaccacaatgctgagcagtgcttcaagacag 348
            |||||||||| ||| |||||||||||||| |||   ||||||| || || ||||||||||
Sbjct: 1005 ccacggaagtgcatatatacttgctggataacccagatgctgatcaatgtttcaagacag 946

              
Query: 349  aa 350
            ||
Sbjct: 945  aa 944
to top
>gb|BT013104.1| Lycopersicon esculentum clone 114390R, mRNA sequence
          Length = 1321

 Score = 48.1 bits (24), Expect = 0.022
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 283  ccacttccacggaagtacatgtatacttgctg 314
            |||||||| ||||| |||||||||||||||||
Sbjct: 1021 ccacttcctcggaaatacatgtatacttgctg 990
to top
>ref|NM_100990.3| Arabidopsis thaliana carrier AT1G11180 mRNA, complete cds
          Length = 1145

 Score = 46.1 bits (23), Expect = 0.088
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 280 tttccacttccacggaagtacatgtatacttgctg 314
           ||||| ||||| | |||||||||||||||||||||
Sbjct: 876 tttccgcttcctctgaagtacatgtatacttgctg 842
to top
>gb|AC007259.4| Arabidopsis thaliana chromosome I BAC T28P6 genomic sequence, complete
             sequence
          Length = 97146

 Score = 46.1 bits (23), Expect = 0.088
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                
Query: 280   tttccacttccacggaagtacatgtatacttgctg 314
             ||||| ||||| | |||||||||||||||||||||
Sbjct: 69828 tttccgcttcctctgaagtacatgtatacttgctg 69862
to top
>emb|BX817123.1|CNS0ABQO Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH86ZH05 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1108

 Score = 46.1 bits (23), Expect = 0.088
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 280 tttccacttccacggaagtacatgtatacttgctg 314
           ||||| ||||| | |||||||||||||||||||||
Sbjct: 877 tttccgcttcctctgaagtacatgtatacttgctg 843
to top
>emb|AL022164.1|HS581F7 Human DNA sequence from clone RP4-581F7 on chromosome Xq26.1-27.3,
              complete sequence
          Length = 156432

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 270    ctgagcagcctttccacttcca 291
              ||||||||||||||||||||||
Sbjct: 110015 ctgagcagcctttccacttcca 110036
to top
>gb|AC020602.6| Homo sapiens BAC clone RP11-461M18 from 2, complete sequence
          Length = 167227

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 365    caaagtaaaatattcccacaat 386
              ||||||||||||||||||||||
Sbjct: 124238 caaagtaaaatattcccacaat 124217
to top
>emb|CT574563.2| Pan troglodytes chromosome X clone CH251-7J11 map Xq28, complete
             sequence
          Length = 204138

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 270   ctgagcagcctttccacttcca 291
             ||||||||||||||||||||||
Sbjct: 82675 ctgagcagcctttccacttcca 82696
to top
>emb|AL357506.10| Human DNA sequence from clone RP11-327K21 on chromosome 6, complete
             sequence
          Length = 159294

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 209   ctcatccattcatctatcaaa 229
             |||||||||||||||||||||
Sbjct: 81423 ctcatccattcatctatcaaa 81443
to top
>emb|AL139042.15| Human DNA sequence from clone RP11-459O1 on chromosome 6 Contains an
              actin beta (ACTB) pseudogene and part of a novel gene,
              complete sequence
          Length = 107745

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 16     ttgtatttcccaaaagattaa 36
              |||||||||||||||||||||
Sbjct: 104062 ttgtatttcccaaaagattaa 104042
to top
>gb|AF191071.3| Homo sapiens chromosome 8 clone GS1-388D06 map 8unmapped, complete
             sequence
          Length = 88473

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 209   ctcatccattcatctatcaaa 229
             |||||||||||||||||||||
Sbjct: 80891 ctcatccattcatctatcaaa 80911
to top
>gb|AC102103.10| Mus musculus chromosome 15, clone RP23-82K1, complete sequence
          Length = 237423

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 62    ggcctaggaaaggaatgaag 81
             ||||||||||||||||||||
Sbjct: 36281 ggcctaggaaaggaatgaag 36262
to top
>ref|XM_751831.1| Ustilago maydis 521 hypothetical protein (UM00777.1) partial mRNA
          Length = 4557

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 171  acaagaccagacgccatcac 190
            ||||||||||||||||||||
Sbjct: 1790 acaagaccagacgccatcac 1771
to top
>emb|CT009681.2| Pan troglodytes chromosome X BAC PTB-134F20, complete sequence
          Length = 180303

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 31    gattaagctgcatataagcacatg 54
             |||| |||||||||||||||||||
Sbjct: 36697 gattgagctgcatataagcacatg 36720
to top
>gb|AC103363.6| Mus musculus chromosome 17, clone RP24-247H9, complete sequence
          Length = 222909

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 205    tattctcatccattcatcta 224
              ||||||||||||||||||||
Sbjct: 104030 tattctcatccattcatcta 104049
to top
>emb|AL593853.11| Mouse DNA sequence from clone RP23-199A2 on chromosome 11 Contains the 5'
              end of a novel gene, the Sfrs1 gene for
              arginine/serine-rich splicing factor 1 (ASF/SF2), the Vezf1
              gene for vascular endothelial zinc finger 1, a novel gene
              (2210416O15Rik), the gene for the likely ortholog of H.
              sapiens CUE domain containing 1 CUEDC1 (C330016O16Rik), the
              Mrps23 gene for mitochondrial ribosomal protein S23 and two
              CpG islands, complete sequence
          Length = 223276

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 328    ctgagcagtgcttcaagaca 347
              ||||||||||||||||||||
Sbjct: 163560 ctgagcagtgcttcaagaca 163541
to top
>gb|AC044840.9| Homo sapiens chromosome , clone RP11-30L3, complete sequence
          Length = 179834

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 363    aacaaagtaaaatattcccacaat 386
              ||||| ||||||||||||||||||
Sbjct: 163080 aacaaggtaaaatattcccacaat 163103
to top
>emb|BX571829.7| Zebrafish DNA sequence from clone DKEY-256M7 in linkage group 12,
              complete sequence
          Length = 196942

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 213    tccattcatctatcaaaagg 232
              ||||||||||||||||||||
Sbjct: 132699 tccattcatctatcaaaagg 132718
to top
>gb|AC112722.4| Homo sapiens BAC clone RP11-714G18 from 4, complete sequence
          Length = 13996

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 275  cagcctttccacttccacgg 294
            ||||||||||||||||||||
Sbjct: 7996 cagcctttccacttccacgg 7977
to top
>gb|AC016866.12| Homo sapiens chromosome 18, clone RP11-15F12, complete sequence
          Length = 171112

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 363    aacaaagtaaaatattcccacaat 386
              ||||| ||||||||||||||||||
Sbjct: 137232 aacaaggtaaaatattcccacaat 137209
to top
>gb|AC158970.3| Mus musculus chromosome 15, clone RP24-186A9, complete sequence
          Length = 208509

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 62    ggcctaggaaaggaatgaag 81
             ||||||||||||||||||||
Sbjct: 72675 ggcctaggaaaggaatgaag 72694
to top
>gb|AC108940.3| Homo sapiens BAC clone RP11-728F4 from 2, complete sequence
          Length = 126219

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 331   agcagtgcttcaagacagaa 350
             ||||||||||||||||||||
Sbjct: 69078 agcagtgcttcaagacagaa 69059
to top
>gb|AC008073.4| Homo sapiens BAC clone RP11-507M3 from 2, complete sequence
          Length = 166660

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 14    agttgtatttcccaaaagat 33
             ||||||||||||||||||||
Sbjct: 80094 agttgtatttcccaaaagat 80075
to top
>dbj|BS000044.1| Pan troglodytes chromosome 22 clone:RP43-014B20, map 22, complete
            sequences
          Length = 14728

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 7    tgtttgaagttgtatttcccaaaa 30
            |||||||| |||||||||||||||
Sbjct: 3699 tgtttgaaattgtatttcccaaaa 3676
to top
>dbj|AK129268.1| Mus musculus mRNA for mKIAA1031 protein
          Length = 4732

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 62   ggcctaggaaaggaatgaag 81
            ||||||||||||||||||||
Sbjct: 2474 ggcctaggaaaggaatgaag 2455
to top
>gb|AC113178.10| Mus musculus chromosome 15, clone RP23-395K11, complete sequence
          Length = 198803

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 272    gagcagcctttccacttcca 291
              ||||||||||||||||||||
Sbjct: 174017 gagcagcctttccacttcca 174036
to top
>gb|AC147820.2| Xenopus tropicalis clone CH216-11B22, complete sequence
          Length = 65937

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 320   ccacaatgctgagcagtgct 339
             ||||||||||||||||||||
Sbjct: 44566 ccacaatgctgagcagtgct 44585
to top
>dbj|AP002905.2| Homo sapiens genomic DNA, chromosome 8q23, clone:KB1672E10
          Length = 158401

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 203   cctattctcatccattcatctatc 226
             ||||||||||| ||||||||||||
Sbjct: 36419 cctattctcattcattcatctatc 36396


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,752,539
Number of Sequences: 3902068
Number of extensions: 3752539
Number of successful extensions: 71920
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 71779
Number of HSP's gapped (non-prelim): 141
length of query: 407
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 385
effective length of database: 17,147,199,772
effective search space: 6601671912220
effective search space used: 6601671912220
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top