ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart06c12 |
|---|---|
| Clone Library Name | barley_pub |
>VSPA_SOYBN (P15490) Stem 28 kDa glycoprotein precursor (Vegetative storage| protein A) Length = 254 Score = 81.6 bits (200), Expect = 9e-16 Identities = 42/83 (50%), Positives = 57/83 (68%), Gaps = 3/83 (3%) Frame = -2 Query: 462 DQRAITVTNLRRQGISGWMNLLLKQPGFKGS--AVTHKSGERQKLQDAGYVIVGNIGDQW 289 D++A+T NL++ G W L+LK P + AV++K+ R+KL GY IVG IGDQW Sbjct: 171 DKQAVTEANLKKAGYHTWEKLILKDPQDPSTPNAVSYKTAAREKLIRQGYNIVGIIGDQW 230 Query: 288 SDILGAPEG-ARTFKLPDPMYYI 223 SD+LG G +RTFKLP+P+YYI Sbjct: 231 SDLLGGHRGESRTFKLPNPLYYI 253
>VSPB_SOYBN (P10743) Stem 31 kDa glycoprotein precursor (Vegetative storage| protein B) Length = 254 Score = 80.5 bits (197), Expect = 2e-15 Identities = 42/82 (51%), Positives = 55/82 (67%), Gaps = 2/82 (2%) Frame = -2 Query: 462 DQRAITVTNLRRQGISGWMNLLLKQPGF-KGSAVTHKSGERQKLQDAGYVIVGNIGDQWS 286 D+ A+T NL++ G W L+LK P +A+++KS R+ L GY IVG IGDQWS Sbjct: 172 DKMAVTEANLKKAGFHTWEQLILKDPHLITPNALSYKSAMRENLLRQGYRIVGIIGDQWS 231 Query: 285 DILGAPEG-ARTFKLPDPMYYI 223 D+LG G +RTFKLP+PMYYI Sbjct: 232 DLLGDHRGESRTFKLPNPMYYI 253
>PPA1_LYCES (P27061) Acid phosphatase 1 precursor (EC 3.1.3.2) (Apase-1(1))| Length = 255 Score = 78.6 bits (192), Expect = 8e-15 Identities = 39/82 (47%), Positives = 52/82 (63%), Gaps = 1/82 (1%) Frame = -2 Query: 465 EDQRAITVTNLRRQGISGWMNLLLKQPGFKG-SAVTHKSGERQKLQDAGYVIVGNIGDQW 289 E R++TV NL G W L+L+ G +A T+KS R + + G+ IVGN GDQW Sbjct: 173 ERHRSVTVENLMNAGFHDWHKLILRGSDDHGKTATTYKSERRNAMVEEGFRIVGNSGDQW 232 Query: 288 SDILGAPEGARTFKLPDPMYYI 223 SD+LG+ R+FKLP+PMYYI Sbjct: 233 SDLLGSSMSYRSFKLPNPMYYI 254
>VSP1_ARATH (O49195) Vegetative storage protein 1 precursor| Length = 270 Score = 76.3 bits (186), Expect = 4e-14 Identities = 37/76 (48%), Positives = 51/76 (67%) Frame = -2 Query: 450 ITVTNLRRQGISGWMNLLLKQPGFKGSAVTHKSGERQKLQDAGYVIVGNIGDQWSDILGA 271 IT+ NL+ G++ W +L+LK G K + V +KS R L GY IVGNIGDQW+D++ Sbjct: 194 ITIENLKAVGVTKWKHLILKPNGSKLTQVVYKSKVRNSLVKKGYNIVGNIGDQWADLVED 253 Query: 270 PEGARTFKLPDPMYYI 223 G R FKLP+P+YY+ Sbjct: 254 TPG-RVFKLPNPLYYV 268
>S25K_SOYBN (P10742) Stem 31 kDa glycoprotein precursor (Vegetative storage| protein VSP25) (Fragment) Length = 291 Score = 73.9 bits (180), Expect = 2e-13 Identities = 39/79 (49%), Positives = 53/79 (67%), Gaps = 3/79 (3%) Frame = -2 Query: 462 DQRAITVTNLRRQGISGWMNLLLKQPGFKGS--AVTHKSGERQKLQDAGYVIVGNIGDQW 289 D++A+T NL++ G W L+LK P + AV++K+ R+KL GY IVG IGDQW Sbjct: 168 DKQAVTEANLKKAGYHTWEKLILKDPQDPSTPNAVSYKTAAREKLIRQGYNIVGIIGDQW 227 Query: 288 SDILGAPEG-ARTFKLPDP 235 SD+LG G +RTFKLP+P Sbjct: 228 SDLLGGHRGESRTFKLPNP 246
>VSP2_ARATH (O82122) Vegetative storage protein 2 precursor| Length = 265 Score = 72.0 bits (175), Expect = 7e-13 Identities = 35/76 (46%), Positives = 49/76 (64%) Frame = -2 Query: 450 ITVTNLRRQGISGWMNLLLKQPGFKGSAVTHKSGERQKLQDAGYVIVGNIGDQWSDILGA 271 +T+ NL G++ W +L+LK G V +KS R+ L GY IVGNIGDQW+D++ Sbjct: 189 VTLDNLEAAGVTYWKHLILKPNGSNLRQVVYKSKVRKSLVKKGYNIVGNIGDQWADLVED 248 Query: 270 PEGARTFKLPDPMYYI 223 G R FKLP+P+YY+ Sbjct: 249 TPG-RVFKLPNPLYYV 263
>DLDH_SHIFL (P0A9P3) Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (E3 component of| pyruvate and 2-oxoglutarate dehydrogenases complexes) (Dihydrolipoamide dehydrogenase) (Glycine cleavage system L protein) Length = 473 Score = 31.6 bits (70), Expect = 1.1 Identities = 13/34 (38%), Positives = 22/34 (64%) Frame = +1 Query: 166 ELIREINGSMPGRARGGLADVVHGVGQLEGAGTL 267 ++I ++ G + G A+G VV+G+G+ GA TL Sbjct: 91 KVINQLTGGLAGMAKGRKVKVVNGLGKFTGANTL 124
>DLDH_ECOLI (P0A9P0) Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (E3 component of| pyruvate and 2-oxoglutarate dehydrogenases complexes) (Dihydrolipoamide dehydrogenase) (Glycine cleavage system L protein) Length = 473 Score = 31.6 bits (70), Expect = 1.1 Identities = 13/34 (38%), Positives = 22/34 (64%) Frame = +1 Query: 166 ELIREINGSMPGRARGGLADVVHGVGQLEGAGTL 267 ++I ++ G + G A+G VV+G+G+ GA TL Sbjct: 91 KVINQLTGGLAGMAKGRKVKVVNGLGKFTGANTL 124
>DLDH_ECOL6 (P0A9P1) Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (E3 component of| pyruvate and 2-oxoglutarate dehydrogenases complexes) (Dihydrolipoamide dehydrogenase) (Glycine cleavage system L protein) Length = 473 Score = 31.6 bits (70), Expect = 1.1 Identities = 13/34 (38%), Positives = 22/34 (64%) Frame = +1 Query: 166 ELIREINGSMPGRARGGLADVVHGVGQLEGAGTL 267 ++I ++ G + G A+G VV+G+G+ GA TL Sbjct: 91 KVINQLTGGLAGMAKGRKVKVVNGLGKFTGANTL 124
>DLDH_ECO57 (P0A9P2) Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (E3 component of| pyruvate and 2-oxoglutarate dehydrogenases complexes) (Dihydrolipoamide dehydrogenase) (Glycine cleavage system L protein) Length = 473 Score = 31.6 bits (70), Expect = 1.1 Identities = 13/34 (38%), Positives = 22/34 (64%) Frame = +1 Query: 166 ELIREINGSMPGRARGGLADVVHGVGQLEGAGTL 267 ++I ++ G + G A+G VV+G+G+ GA TL Sbjct: 91 KVINQLTGGLAGMAKGRKVKVVNGLGKFTGANTL 124
>AAD6_YEAST (P43547) Putative aryl-alcohol dehydrogenase AAD6 (EC 1.1.1.-)| Length = 212 Score = 30.8 bits (68), Expect = 1.8 Identities = 13/26 (50%), Positives = 17/26 (65%) Frame = -2 Query: 306 NIGDQWSDILGAPEGARTFKLPDPMY 229 +IGD WS+ILG+ R F+L D Y Sbjct: 38 SIGDAWSEILGSMSKERAFELLDAFY 63
>PROL4_HUMAN (Q16378) Proline-rich protein 4 precursor (Lacrimal proline-rich| protein) (Nasopharyngeal carcinoma-associated proline-rich protein 4) Length = 134 Score = 30.4 bits (67), Expect = 2.3 Identities = 10/12 (83%), Positives = 10/12 (83%) Frame = -1 Query: 460 PEGHHRHQPPPP 425 P GHHRH PPPP Sbjct: 76 PGGHHRHPPPPP 87
>FLGH_BRUSU (Q8FXC2) Flagellar L-ring protein precursor (Basal body L-ring| protein) Length = 238 Score = 30.0 bits (66), Expect = 3.1 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 3/48 (6%) Frame = +1 Query: 190 SMPGRARGGLADV---VHGVGQLEGAGTLWRAEDVAPLVADVTDDDIP 324 S+ G A GG D H + +G GT+ R+ED+ +A + D +P Sbjct: 116 SITGAAAGGDMDASINTHSDSKSKGKGTIERSEDIRLQIAAIVTDTLP 163
>FLGH_BRUME (Q8YB19) Flagellar L-ring protein precursor (Basal body L-ring| protein) Length = 238 Score = 30.0 bits (66), Expect = 3.1 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 3/48 (6%) Frame = +1 Query: 190 SMPGRARGGLADV---VHGVGQLEGAGTLWRAEDVAPLVADVTDDDIP 324 S+ G A GG D H + +G GT+ R+ED+ +A + D +P Sbjct: 116 SITGAAAGGDMDASVNTHSDSKSKGKGTIERSEDIRLQIAAIVTDTLP 163
>FLGH_BRUAB (Q579T6) Flagellar L-ring protein precursor (Basal body L-ring| protein) Length = 238 Score = 30.0 bits (66), Expect = 3.1 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 3/48 (6%) Frame = +1 Query: 190 SMPGRARGGLADV---VHGVGQLEGAGTLWRAEDVAPLVADVTDDDIP 324 S+ G A GG D H + +G GT+ R+ED+ +A + D +P Sbjct: 116 SITGAAAGGDMDASVNTHSDSKSKGKGTIERSEDIRLQIAAIVTDTLP 163
>YGFT_ECOLI (Q46820) Hypothetical protein ygfT| Length = 639 Score = 30.0 bits (66), Expect = 3.1 Identities = 22/54 (40%), Positives = 27/54 (50%), Gaps = 3/54 (5%) Frame = +1 Query: 298 ADVTDDDIPGVLQLLPLAGLVGHRRALEPGLLQQEVHPPRDPLAAEV---GDGD 450 AD+ +D PGV+Q LP L H R L GL + E +P D V G GD Sbjct: 411 ADLPHEDAPGVIQALPF--LTAHTRQL-MGLPESEEYPLTDVEGKRVVVLGGGD 461
>ZN469_HUMAN (Q96JG9) Zinc finger protein 469 (Fragment)| Length = 2469 Score = 29.3 bits (64), Expect = 5.2 Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 1/36 (2%) Frame = -1 Query: 463 GPEGHHRHQPPPPGDLWVD-EPLAEATRVQGLCGDP 359 G G R P P D W EPL +AT V C DP Sbjct: 1816 GSPGPPRTTPSPSPDPWAGGEPLLQATPVHEACKDP 1851
>MOS1B_HUMAN (Q9NZB8) Molybdenum cofactor biosynthesis protein 1 B (MOCS1B)| (Molybdenum cofactor synthesis-step 1 protein A-B) (Molybdenum cofactor biosynthesis protein C) Length = 636 Score = 29.3 bits (64), Expect = 5.2 Identities = 14/38 (36%), Positives = 19/38 (50%) Frame = +2 Query: 335 SFCLSPDLWVTAEPLNPGCFSKRFIHPEIPWRRRLVTV 448 S CLSP W +A P P S++ H + R +V V Sbjct: 459 SKCLSPGSWASAAPSGPQLTSEQLTHVDSEGRAAMVDV 496
>NLGN1_RAT (Q62765) Neuroligin-1 precursor (Neuroligin I)| Length = 843 Score = 28.9 bits (63), Expect = 6.8 Identities = 13/31 (41%), Positives = 16/31 (51%) Frame = -1 Query: 460 PEGHHRHQPPPPGDLWVDEPLAEATRVQGLC 368 P G HR QPP P W D + AT+ +C Sbjct: 89 PTGEHRFQPPEPPSPWSD--IRNATQFAPVC 117
>NLGN1_MOUSE (Q99K10) Neuroligin-1 precursor| Length = 843 Score = 28.9 bits (63), Expect = 6.8 Identities = 13/31 (41%), Positives = 16/31 (51%) Frame = -1 Query: 460 PEGHHRHQPPPPGDLWVDEPLAEATRVQGLC 368 P G HR QPP P W D + AT+ +C Sbjct: 89 PTGEHRFQPPEPPSPWSD--IRNATQFAPVC 117
>FABG6_BRANA (P27582) 3-oxoacyl-[acyl-carrier-protein] reductase (EC 1.1.1.100)| (3-ketoacyl-acyl carrier protein reductase) (Fragments) Length = 201 Score = 28.9 bits (63), Expect = 6.8 Identities = 19/55 (34%), Positives = 29/55 (52%) Frame = -2 Query: 429 RQGISGWMNLLLKQPGFKGSAVTHKSGERQKLQDAGYVIVGNIGDQWSDILGAPE 265 R+G S +N+ + PGF S +T K GE + + G + +G G Q D+ G E Sbjct: 124 REGASRNINVNVVCPGFIASEMTAKLGEDMEKKILGTIPLGRYG-QPEDVAGLVE 177
>IDI2_RICFE (Q4ULD7) Isopentenyl-diphosphate delta-isomerase (EC 5.3.3.2) (IPP| isomerase) (Isopentenyl pyrophosphate isomerase) Length = 345 Score = 28.9 bits (63), Expect = 6.8 Identities = 17/75 (22%), Positives = 34/75 (45%) Frame = +1 Query: 118 NWGLII*RNMHXTKSIELIREINGSMPGRARGGLADVVHGVGQLEGAGTLWRAEDVAPLV 297 NWG+ S++++RE++G +P A GGL + G + ++ Sbjct: 251 NWGI------PTLDSLKMVREVSGDIPIIASGGLKSGIDGAKAIRMGANIFGLAGQFLKA 304 Query: 298 ADVTDDDIPGVLQLL 342 AD ++ + +QL+ Sbjct: 305 ADTSESLLSEEVQLI 319
>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1| Length = 888 Score = 28.9 bits (63), Expect = 6.8 Identities = 17/43 (39%), Positives = 22/43 (51%) Frame = -3 Query: 464 RTRGPSPSPTSAARGSLGG*TSC*SNPGSRALR*PTSPARGRS 336 +T+ +PSP SA R S S P + + P SPAR RS Sbjct: 725 KTKASTPSPRSARRVSSSRSASGSPEPAPKKHQGPPSPARSRS 767
>FA53C_HUMAN (Q9NYF3) Protein FAM53C| Length = 392 Score = 28.5 bits (62), Expect = 8.9 Identities = 19/59 (32%), Positives = 23/59 (38%), Gaps = 1/59 (1%) Frame = +2 Query: 263 PSGAPRMSLHWSPMLPTMT-YPASCSFCLSPDLWVTAEPLNPGCFSKRFIHPEIPWRRR 436 P A S W +++ P F LSP L A P S PE+PWR R Sbjct: 205 PCAASPQSGSWESDAESLSPCPPQRRFSLSPSLGPQASRFLPSARSSPASSPELPWRPR 263
>FABG1_BRANA (Q93X62) 3-oxoacyl-[acyl-carrier-protein] reductase 1, chloroplast| precursor (EC 1.1.1.100) (3-ketoacyl-acyl carrier protein reductase 1) (Beta-keto acyl-carrier protein reductase 1) Length = 320 Score = 28.5 bits (62), Expect = 8.9 Identities = 19/55 (34%), Positives = 29/55 (52%) Frame = -2 Query: 429 RQGISGWMNLLLKQPGFKGSAVTHKSGERQKLQDAGYVIVGNIGDQWSDILGAPE 265 R+G S +N+ + PGF S +T K GE + + G + +G G Q D+ G E Sbjct: 243 REGASRNINVNVVCPGFIASDMTAKLGEDMEKKILGTIPLGRYG-QPEDVAGLVE 296
>FABG4_BRANA (Q949M2) 3-oxoacyl-[acyl-carrier-protein] reductase 4 (EC| 1.1.1.100) (3-ketoacyl-acyl carrier protein reductase 4) (Fragment) Length = 254 Score = 28.5 bits (62), Expect = 8.9 Identities = 19/55 (34%), Positives = 29/55 (52%) Frame = -2 Query: 429 RQGISGWMNLLLKQPGFKGSAVTHKSGERQKLQDAGYVIVGNIGDQWSDILGAPE 265 R+G S +N+ + PGF S +T K GE + + G + +G G Q D+ G E Sbjct: 177 REGASRNINVNVVCPGFIASDMTAKLGEDMEKKILGTIPLGRYG-QPEDVAGLVE 230
>FABG3_BRANA (Q949M3) 3-oxoacyl-[acyl-carrier-protein] reductase 3, chloroplast| precursor (EC 1.1.1.100) (3-ketoacyl-acyl carrier protein reductase 3) Length = 315 Score = 28.5 bits (62), Expect = 8.9 Identities = 19/55 (34%), Positives = 29/55 (52%) Frame = -2 Query: 429 RQGISGWMNLLLKQPGFKGSAVTHKSGERQKLQDAGYVIVGNIGDQWSDILGAPE 265 R+G S +N+ + PGF S +T K GE + + G + +G G Q D+ G E Sbjct: 238 REGASRNINVNVVCPGFIASDMTAKLGEDMEKKILGTIPLGRYG-QPEDVAGLVE 291
>FABG2_BRANA (Q93X67) 3-oxoacyl-[acyl-carrier-protein] reductase 2, chloroplast| precursor (EC 1.1.1.100) (3-ketoacyl-acyl carrier protein reductase 2) Length = 328 Score = 28.5 bits (62), Expect = 8.9 Identities = 19/55 (34%), Positives = 29/55 (52%) Frame = -2 Query: 429 RQGISGWMNLLLKQPGFKGSAVTHKSGERQKLQDAGYVIVGNIGDQWSDILGAPE 265 R+G S +N+ + PGF S +T K GE + + G + +G G Q D+ G E Sbjct: 251 REGASRNINVNVVCPGFIASDMTAKLGEDMEKKILGTIPLGRYG-QPEDVAGLVE 304 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 66,744,242 Number of Sequences: 219361 Number of extensions: 1357456 Number of successful extensions: 4366 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 4122 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4342 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 3026354448 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
