ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart06c11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AL162573.15| Human DNA sequence from clone RP11-275J18 on ch... 46 0.078
2gb|AC116703.10| Mus musculus chromosome 6, clone RP23-16O17, com... 46 0.078
3gb|AC121567.3| Mus musculus BAC clone RP23-225D14 from 14, compl... 44 0.31
4emb|AL590714.27| Human DNA sequence from clone RP11-297K8 on chr... 44 0.31
5gb|AC112514.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.2
6gb|AE017308.1| Mycoplasma mobile 163K complete genome 42 1.2
7gb|AC147382.3| Pan troglodytes BAC clone RP43-171M24 from 7, com... 42 1.2
8gb|AC091730.5| Homo sapiens BAC clone RP11-84F15 from 7, complet... 42 1.2
9emb|AL136456.13| Human DNA sequence from clone RP11-97K3 on chro... 42 1.2
10emb|AL022600.1|SPBC13G1 S.pombe chromosome II cosmid c13G1 42 1.2
11gb|AC092750.2| Oryza sativa (japonica cultivar-group) cultivar N... 42 1.2
12gb|AC060761.10| Mus musculus chromosome 17, clone RP23-218D19, c... 42 1.2
13gb|AC158502.3| Medicago truncatula chromosome 7 BAC clone mth2-7... 42 1.2
14gb|AE002098.2| Neisseria meningitidis MC58, complete genome 42 1.2
15dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
16emb|BX537324.13| Zebrafish DNA sequence from clone CH211-200M10 ... 42 1.2
17dbj|AB084781.1| Mycoplasma mobile genes for P123, Gli349, Gli521... 42 1.2
18gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.2
19emb|AL953875.10| Zebrafish DNA sequence from clone CH211-243J5, ... 42 1.2
20ref|NM_120377.2| Arabidopsis thaliana unknown protein AT5G02990 ... 40 4.8
21ref|NM_104060.3| Arabidopsis thaliana ATP binding / kinase/ prot... 40 4.8
22gb|AC121311.16| Mus musculus chromosome 3, clone RP24-317L5, com... 40 4.8
23gb|AC113989.6| Mus musculus chromosome 3, clone RP24-130I14, com... 40 4.8
24gb|AC150210.1| Pan troglodytes chromosome X clone RP43-051H11 ma... 40 4.8
25ref|XM_709535.1| Candida albicans SC5314 coordinator of morphoge... 40 4.8
26ref|XM_709439.1| Candida albicans SC5314 coordinator of morphoge... 40 4.8
27gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome 40 4.8
28emb|CR932636.1|CNS0KYCX Paramecium tetraurelia, Small GTPase ran... 40 4.8
29gb|AC115290.5| Mus musculus BAC clone RP23-65M10 from chromosome... 40 4.8
30gb|AC126410.12| Mus musculus chromosome 5, clone RP23-368H6, com... 40 4.8
31gb|AC093856.3| Homo sapiens BAC clone RP11-518I12 from 7, comple... 40 4.8
32gb|AC137081.30| Medicago truncatula clone mth2-10j6, complete se... 40 4.8
33emb|AL590102.5| Human DNA sequence from clone RP11-543A19 on chr... 40 4.8
34gb|AY063946.1| Arabidopsis thaliana At1g51805 mRNA sequence 40 4.8
35emb|BX640411.1| Bordetella pertussis strain Tohama I, complete g... 40 4.8
36emb|AL163002.1|ATF15A17 Arabidopsis thaliana DNA chromosome 5, B... 40 4.8
37emb|AL162973.1|ATF9G14 Arabidopsis thaliana DNA chromosome 5, BA... 40 4.8
38emb|AJ413195.1|AFE413195 Acidithiobacillus ferrooxidans partial ... 40 4.8
39emb|CR293525.10| Zebrafish DNA sequence from clone CH211-142B9 i... 40 4.8
40gb|AC157932.8| Mus musculus chromosome 5, clone RP24-188B2, comp... 40 4.8
41gb|AC175028.7| Medicago truncatula clone mth2-7e22, complete seq... 40 4.8
42gb|AC072026.13| Homo sapiens 3 BAC RP11-500K19 (Roswell Park Can... 40 4.8
43gb|AC010997.12| Homo sapiens chromosome 10 clone RP11-399K21, co... 40 4.8
44gb|AC026448.5| Homo sapiens chromosome 4 clone CTD-2314I6, compl... 40 4.8
45emb|BX663605.6| Zebrafish DNA sequence from clone DKEY-14I19 in ... 40 4.8
46gb|AC025294.14|AC025294 Arabidopsis thaliana chromosome 1 BAC F1... 40 4.8
47emb|BX324202.9| Zebrafish DNA sequence from clone CH211-158G9 in... 40 4.8
48gb|AC139715.1| Homo sapiens BAC clone RP11-399D2 from 4, complet... 40 4.8
49gb|AY132359.1| Spironucleus barkhanus prolyl tRNA synthetase (pr... 40 4.8
50gb|AC020940.6| Homo sapiens chromosome 5 clone CTD-2311E21, comp... 40 4.8
51emb|AL833789.20| Zebrafish DNA sequence from clone DKEY-69O7 in ... 40 4.8
52dbj|AB063247.1| Candida maltosa C-GCN4 gene for C-Gcn4p, complet... 40 4.8
53emb|AL833782.13| Mouse DNA sequence from clone RP23-83L24 on chr... 40 4.8
54dbj|AK024492.1| Homo sapiens mRNA for FLJ00096 protein, partial cds 40 4.8
55gb|AF205716.1|AF205716 Candida albicans transcriptional activato... 40 4.8
56emb|AL121652.2|CNS01DS2 BAC sequence from the SPG4 candidate reg... 40 4.8
57emb|AL133249.1|CNS01DUF BAC sequence from the SPG4 candidate reg... 40 4.8
58gb|AC101838.17| Mus musculus chromosome 1, clone RP23-242B14, co... 40 4.8
59gb|AC172989.2| Mus musculus BAC clone RP24-556J6 from chromosome... 40 4.8
60emb|AJ871581.1| Streptomyces achromogenes subsp. rubradiris comp... 40 4.8
61gb|AC138666.6| Mus musculus chromosome 5, clone RP24-140D11, com... 40 4.8
62emb|BX545855.16| Zebrafish DNA sequence from clone CH211-212N6 i... 40 4.8
63gb|AC167818.4| Mus musculus BAC clone RP23-120O24 from chromosom... 40 4.8
64emb|Z81516.1|CEF26H9 Caenorhabditis elegans Cosmid F26H9, comple... 40 4.8
65dbj|AP004971.1| Lotus japonicus genomic DNA, chromosome 5, clone... 40 4.8
66gb|AC118599.24| Mus musculus chromosome 5, clone RP23-459G5, com... 40 4.8
67emb|AL929365.1|PF13PB1 Plasmodium falciparum chromosome 13, unma... 40 4.8
68dbj|AP006715.1| Porphyra yezoensis chloroplast DNA, complete genome 40 4.8
69dbj|AP001010.4| Homo sapiens genomic DNA, chromosome 18 clone:RP... 40 4.8 
>emb|AL162573.15| Human DNA sequence from clone RP11-275J18 on chromosome 13, complete
              sequence
          Length = 166509

 Score = 46.1 bits (23), Expect = 0.078
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 30     caaataaaaacatataaacaatc 52
              |||||||||||||||||||||||
Sbjct: 144811 caaataaaaacatataaacaatc 144789
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>gb|AC116703.10| Mus musculus chromosome 6, clone RP23-16O17, complete sequence
          Length = 202915

 Score = 46.1 bits (23), Expect = 0.078
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 41    atataaacaatcaaaattttact 63
             |||||||||||||||||||||||
Sbjct: 77099 atataaacaatcaaaattttact 77077
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>gb|AC121567.3| Mus musculus BAC clone RP23-225D14 from 14, complete sequence
          Length = 165586

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 36    aaaacatataaacaatcaaaatttta 61
             ||||||| ||||||||||||||||||
Sbjct: 79864 aaaacatctaaacaatcaaaatttta 79889
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>emb|AL590714.27| Human DNA sequence from clone RP11-297K8 on chromosome 1 Contains a
             novel gene, the gene for a novel protein (HSPC155), the
             USP21 gene for ubiquitin specific protease 21, the PPOX
             gene for protoporphyrinogen oxidase, the B4GALT3 gene for
             UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase
             polypeptide 3, the ADAMTS4 gene for a disintegrin-like and
             metalloprotease (reprolysin type) with thrombospondin type
             1 motif 4, the NDUFS2 gene for NADH dehydrogenase
             (ubiquinone) Fe-S protein 2 (49kDa (NADH-coenzyme Q
             reductase)), the FCER1G gene for Fc fragment of IgE high
             affinity I  receptor for gamma polypeptide, the APOA2 gene
             for apolipoprotein A-II, the gene for a novel protein
             (FLJ12770), the NR1I3 gene for nuclear receptor subfamily
             1 group I member 3 and the 5' end of a novel gene,
             complete sequence
          Length = 133512

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 31    aaataaaaacatataaacaatcaaaa 56
             |||||||||||||||||||| |||||
Sbjct: 87019 aaataaaaacatataaacaaacaaaa 86994
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>gb|AC112514.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNAb0023M11,
              complete sequence
          Length = 120228

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 49     aatcaaaattttacttattta 69
              |||||||||||||||||||||
Sbjct: 111545 aatcaaaattttacttattta 111525
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>gb|AE017308.1| Mycoplasma mobile 163K complete genome
          Length = 777079

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 55     aattttacttatttaacaaat 75
              |||||||||||||||||||||
Sbjct: 160872 aattttacttatttaacaaat 160892
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>gb|AC147382.3| Pan troglodytes BAC clone RP43-171M24 from 7, complete sequence
          Length = 198872

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 29    tcaaataaaaacatataaaca 49
             |||||||||||||||||||||
Sbjct: 15789 tcaaataaaaacatataaaca 15809
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>gb|AC091730.5| Homo sapiens BAC clone RP11-84F15 from 7, complete sequence
          Length = 128032

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 29     tcaaataaaaacatataaaca 49
              |||||||||||||||||||||
Sbjct: 120420 tcaaataaaaacatataaaca 120400
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>emb|AL136456.13| Human DNA sequence from clone RP11-97K3 on chromosome 1q31.1-31.3,
             complete sequence
          Length = 158745

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 28    ttcaaataaaaacatataaac 48
             |||||||||||||||||||||
Sbjct: 67466 ttcaaataaaaacatataaac 67446
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>emb|AL022600.1|SPBC13G1 S.pombe chromosome II cosmid c13G1
          Length = 28000

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 33    ataaaaacatataaacaatca 53
             |||||||||||||||||||||
Sbjct: 25836 ataaaaacatataaacaatca 25816
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>gb|AC092750.2| Oryza sativa (japonica cultivar-group) cultivar Nipponbare from
             chromosome 10, complete sequence
          Length = 134933

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 49    aatcaaaattttacttattta 69
             |||||||||||||||||||||
Sbjct: 51317 aatcaaaattttacttattta 51297
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>gb|AC060761.10| Mus musculus chromosome 17, clone RP23-218D19, complete sequence
          Length = 228922

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 31     aaataaaaacatataaacaatcaaa 55
              ||||||||||| |||||||||||||
Sbjct: 105873 aaataaaaacaaataaacaatcaaa 105897
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>gb|AC158502.3| Medicago truncatula chromosome 7 BAC clone mth2-73i16, complete
             sequence
          Length = 124955

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 31    aaataaaaacatataaacaat 51
             |||||||||||||||||||||
Sbjct: 36548 aaataaaaacatataaacaat 36568
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>gb|AE002098.2| Neisseria meningitidis MC58, complete genome
          Length = 2272360

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 27      attcaaataaaaacatataaacaat 51
               ||||||||||| |||||||||||||
Sbjct: 1436514 attcaaataaagacatataaacaat 1436490
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 49       aatcaaaattttacttattta 69
                |||||||||||||||||||||
Sbjct: 10269992 aatcaaaattttacttattta 10269972
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>emb|BX537324.13| Zebrafish DNA sequence from clone CH211-200M10 in linkage group 18,
             complete sequence
          Length = 145408

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 28/29 (96%), Gaps = 1/29 (3%)
 Strand = Plus / Minus

                                          
Query: 27    attcaaataaaaacatataaacaatcaaa 55
             |||||||||||||||| ||||||||||||
Sbjct: 72633 attcaaataaaaacat-taaacaatcaaa 72606
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>dbj|AB084781.1| Mycoplasma mobile genes for P123, Gli349, Gli521, P42, complete cds
          Length = 30469

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 55    aattttacttatttaacaaat 75
             |||||||||||||||||||||
Sbjct: 26531 aattttacttatttaacaaat 26551
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 49       aatcaaaattttacttattta 69
                |||||||||||||||||||||
Sbjct: 10276031 aatcaaaattttacttattta 10276011
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>emb|AL953875.10| Zebrafish DNA sequence from clone CH211-243J5, complete sequence
          Length = 160423

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 28/29 (96%), Gaps = 1/29 (3%)
 Strand = Plus / Plus

                                          
Query: 27    attcaaataaaaacatataaacaatcaaa 55
             |||||||||||||||| ||||||||||||
Sbjct: 61162 attcaaataaaaacat-taaacaatcaaa 61189
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>ref|NM_120377.2| Arabidopsis thaliana unknown protein AT5G02990 mRNA, complete cds
          Length = 1647

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 47   acaatcaaaattttacttat 66
            ||||||||||||||||||||
Sbjct: 1409 acaatcaaaattttacttat 1428
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>ref|NM_104060.3| Arabidopsis thaliana ATP binding / kinase/ protein kinase/ protein
            serine/threonine kinase/ protein-tyrosine kinase
            AT1G51805 mRNA, complete cds
          Length = 2964

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 31   aaataaaaacatataaacaa 50
            ||||||||||||||||||||
Sbjct: 2810 aaataaaaacatataaacaa 2791
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>gb|AC121311.16| Mus musculus chromosome 3, clone RP24-317L5, complete sequence
          Length = 221261

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 31     aaataaaaacatataaacaa 50
              ||||||||||||||||||||
Sbjct: 158585 aaataaaaacatataaacaa 158566
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>gb|AC113989.6| Mus musculus chromosome 3, clone RP24-130I14, complete sequence
          Length = 159841

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 25    agattcaaataaaaacatataaac 48
             ||||| ||||||||||||||||||
Sbjct: 53518 agattaaaataaaaacatataaac 53495
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>gb|AC150210.1| Pan troglodytes chromosome X clone RP43-051H11 map human ortholog p21.3,
              complete sequence
          Length = 188797

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 18     aatcttgagattcaaataaaaacatata 45
              ||||||| |||| |||||||||||||||
Sbjct: 107953 aatcttgggattgaaataaaaacatata 107926
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>ref|XM_709535.1| Candida albicans SC5314 coordinator of morphogenesis
          (CaO19.8938), mRNA
          Length = 972

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 18 aatcttgagattcaaataaa 37
          ||||||||||||||||||||
Sbjct: 55 aatcttgagattcaaataaa 36
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>ref|XM_709439.1| Candida albicans SC5314 coordinator of morphogenesis
          (CaO19.1358), mRNA
          Length = 972

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 18 aatcttgagattcaaataaa 37
          ||||||||||||||||||||
Sbjct: 55 aatcttgagattcaaataaa 36
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>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome
          Length = 2467205

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 196     gtggcggcgcctccctcgag 215
               ||||||||||||||||||||
Sbjct: 2391738 gtggcggcgcctccctcgag 2391719
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>emb|CR932636.1|CNS0KYCX Paramecium tetraurelia, Small GTPase ran, putative, complete gene
          Length = 3001

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 45   aaacaatcaaaattttactt 64
            ||||||||||||||||||||
Sbjct: 2384 aaacaatcaaaattttactt 2365
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>gb|AC115290.5| Mus musculus BAC clone RP23-65M10 from chromosome 10, complete sequence
          Length = 245623

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 32     aataaaaacatataaacaat 51
              ||||||||||||||||||||
Sbjct: 128761 aataaaaacatataaacaat 128742
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>gb|AC126410.12| Mus musculus chromosome 5, clone RP23-368H6, complete sequence
          Length = 187058

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 56    attttacttatttaacaaat 75
             ||||||||||||||||||||
Sbjct: 22540 attttacttatttaacaaat 22521
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>gb|AC093856.3| Homo sapiens BAC clone RP11-518I12 from 7, complete sequence
          Length = 205317

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 28     ttcaaataaaaacatataaa 47
              ||||||||||||||||||||
Sbjct: 170150 ttcaaataaaaacatataaa 170169
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>gb|AC137081.30| Medicago truncatula clone mth2-10j6, complete sequence
          Length = 132253

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 60    tacttatttaacaaatcaaacaac 83
             |||||||||||||| |||||||||
Sbjct: 67908 tacttatttaacaagtcaaacaac 67885
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>emb|AL590102.5| Human DNA sequence from clone RP11-543A19 on chromosome 13, complete
             sequence
          Length = 66386

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 36    aaaacatataaacaatcaaaattt 59
             |||||| |||||||||||||||||
Sbjct: 22739 aaaacaaataaacaatcaaaattt 22716
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>gb|AY063946.1| Arabidopsis thaliana At1g51805 mRNA sequence
          Length = 2917

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 31   aaataaaaacatataaacaa 50
            ||||||||||||||||||||
Sbjct: 2764 aaataaaaacatataaacaa 2745
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>emb|BX640411.1| Bordetella pertussis strain Tohama I, complete genome; segment 1/12
          Length = 346359

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 186    cggcgccgccgtggcggcgc 205
              ||||||||||||||||||||
Sbjct: 326621 cggcgccgccgtggcggcgc 326602
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>emb|AL163002.1|ATF15A17 Arabidopsis thaliana DNA chromosome 5, BAC clone F15A17 (ESSA
            project)
          Length = 99008

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 47   acaatcaaaattttacttat 66
            ||||||||||||||||||||
Sbjct: 5403 acaatcaaaattttacttat 5422
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>emb|AL162973.1|ATF9G14 Arabidopsis thaliana DNA chromosome 5, BAC clone F9G14 (ESSA project)
          Length = 104769

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 47    acaatcaaaattttacttat 66
             ||||||||||||||||||||
Sbjct: 97868 acaatcaaaattttacttat 97887
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>emb|AJ413195.1|AFE413195 Acidithiobacillus ferrooxidans partial petA2 gene for Rieske
           protein
          Length = 536

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 183 atccggcgccgccgtggcgg 202
           ||||||||||||||||||||
Sbjct: 49  atccggcgccgccgtggcgg 68
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>emb|CR293525.10| Zebrafish DNA sequence from clone CH211-142B9 in linkage group 12,
             complete sequence
          Length = 155553

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 10    atacaaacaatcttgagatt 29
             ||||||||||||||||||||
Sbjct: 54819 atacaaacaatcttgagatt 54800
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>gb|AC157932.8| Mus musculus chromosome 5, clone RP24-188B2, complete sequence
          Length = 168685

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 33    ataaaaacatataaacaatcaaaa 56
             ||||||||||||||||||| ||||
Sbjct: 46340 ataaaaacatataaacaataaaaa 46317
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>gb|AC175028.7| Medicago truncatula clone mth2-7e22, complete sequence
          Length = 131012

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 60    tacttatttaacaaatcaaacaac 83
             |||||||||||||| |||||||||
Sbjct: 20426 tacttatttaacaagtcaaacaac 20449
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>gb|AC072026.13| Homo sapiens 3 BAC RP11-500K19 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 131266

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 27    attcaaataaaaacatataaacaa 50
             |||||||||||||||| |||||||
Sbjct: 14373 attcaaataaaaacatttaaacaa 14396
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>gb|AC010997.12| Homo sapiens chromosome 10 clone RP11-399K21, complete sequence
          Length = 189639

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 312   aatctcctccttcctcttcgtctc 335
             ||||||||||||||||| ||||||
Sbjct: 50071 aatctcctccttcctctccgtctc 50094
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>gb|AC026448.5| Homo sapiens chromosome 4 clone CTD-2314I6, complete sequence
          Length = 104641

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 28    ttcaaataaaaacatataaa 47
             ||||||||||||||||||||
Sbjct: 17778 ttcaaataaaaacatataaa 17797
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>emb|BX663605.6| Zebrafish DNA sequence from clone DKEY-14I19 in linkage group 7, complete
              sequence
          Length = 170764

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 31     aaataaaaacatataaacaa 50
              ||||||||||||||||||||
Sbjct: 110367 aaataaaaacatataaacaa 110386
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>gb|AC025294.14|AC025294 Arabidopsis thaliana chromosome 1 BAC F19C24 genomic sequence, complete
             sequence
          Length = 124511

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 31    aaataaaaacatataaacaa 50
             ||||||||||||||||||||
Sbjct: 24595 aaataaaaacatataaacaa 24576
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>emb|BX324202.9| Zebrafish DNA sequence from clone CH211-158G9 in linkage group 6,
             complete sequence
          Length = 169117

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 29    tcaaataaaaacatataaacaatcaaaa 56
             ||||||||||||| |||||||| |||||
Sbjct: 58476 tcaaataaaaacaaataaacaagcaaaa 58503
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>gb|AC139715.1| Homo sapiens BAC clone RP11-399D2 from 4, complete sequence
          Length = 174076

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 31    aaataaaaacatataaacaatcaa 54
             ||||||||||||||||| ||||||
Sbjct: 43924 aaataaaaacatataaagaatcaa 43901
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>gb|AY132359.1| Spironucleus barkhanus prolyl tRNA synthetase (proS) gene, partial
           cds
          Length = 1816

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 207 tccctcgaggaggccttcaa 226
           ||||||||||||||||||||
Sbjct: 760 tccctcgaggaggccttcaa 779
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>gb|AC020940.6| Homo sapiens chromosome 5 clone CTD-2311E21, complete sequence
          Length = 112922

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 31    aaataaaaacatataaacaa 50
             ||||||||||||||||||||
Sbjct: 81872 aaataaaaacatataaacaa 81891
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>emb|AL833789.20| Zebrafish DNA sequence from clone DKEY-69O7 in linkage group 12,
             complete sequence
          Length = 175664

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 10    atacaaacaatcttgagatt 29
             ||||||||||||||||||||
Sbjct: 67270 atacaaacaatcttgagatt 67251
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>dbj|AB063247.1| Candida maltosa C-GCN4 gene for C-Gcn4p, complete cds
          Length = 2800

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 18   aatcttgagattcaaataaa 37
            ||||||||||||||||||||
Sbjct: 1630 aatcttgagattcaaataaa 1611
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>emb|AL833782.13| Mouse DNA sequence from clone RP23-83L24 on chromosome X, complete
              sequence
          Length = 198249

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 29     tcaaataaaaacatataaacaatcaaaa 56
              ||||||||||||| |||||||| |||||
Sbjct: 109190 tcaaataaaaacaaataaacaaacaaaa 109217
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>dbj|AK024492.1| Homo sapiens mRNA for FLJ00096 protein, partial cds
          Length = 4305

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 312  aatctcctccttcctcttcgtctc 335
            ||||||||||||||||| ||||||
Sbjct: 1731 aatctcctccttcctctccgtctc 1708
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>gb|AF205716.1|AF205716 Candida albicans transcriptional activator Gcn4p (GCN4) mRNA,
           complete cds
          Length = 1580

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 18  aatcttgagattcaaataaa 37
           ||||||||||||||||||||
Sbjct: 530 aatcttgagattcaaataaa 511
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>emb|AL121652.2|CNS01DS2 BAC sequence from the SPG4 candidate region at 2p21-2p22 BAC 1057B06
            of library RPCI-11 from chromosome 2 of Homo sapiens
            (Human)
          Length = 187182

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 34   taaaaacatataaacaatca 53
            ||||||||||||||||||||
Sbjct: 6894 taaaaacatataaacaatca 6913
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>emb|AL133249.1|CNS01DUF BAC sequence from the SPG4 candidate region at 2p21-2p22 BAC 358K12 of
              library RPCI-11 from chromosome 2 of Homo sapiens (Human)
          Length = 168571

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 34     taaaaacatataaacaatca 53
              ||||||||||||||||||||
Sbjct: 147656 taaaaacatataaacaatca 147675
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>gb|AC101838.17| Mus musculus chromosome 1, clone RP23-242B14, complete sequence
          Length = 178509

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 16    acaatcttgagattcaaataaaaacata 43
             |||||||| ||||||| |||||||||||
Sbjct: 61190 acaatcttcagattcatataaaaacata 61163
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>gb|AC172989.2| Mus musculus BAC clone RP24-556J6 from chromosome 15, complete sequence
          Length = 184996

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 24     gagattcaaataaaaacata 43
              ||||||||||||||||||||
Sbjct: 146892 gagattcaaataaaaacata 146911
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>emb|AJ871581.1| Streptomyces achromogenes subsp. rubradiris complete rubradirin gene
             cluster, strain NRRL 3061
          Length = 105657

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 185   ccggcgccgccgtggcggcg 204
             ||||||||||||||||||||
Sbjct: 65503 ccggcgccgccgtggcggcg 65484
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>gb|AC138666.6| Mus musculus chromosome 5, clone RP24-140D11, complete sequence
          Length = 209938

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 56     attttacttatttaacaaat 75
              ||||||||||||||||||||
Sbjct: 183538 attttacttatttaacaaat 183519
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>emb|BX545855.16| Zebrafish DNA sequence from clone CH211-212N6 in linkage group 9,
             complete sequence
          Length = 204962

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 32    aataaaaacatataaacaat 51
             ||||||||||||||||||||
Sbjct: 26228 aataaaaacatataaacaat 26247
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>gb|AC167818.4| Mus musculus BAC clone RP23-120O24 from chromosome 15, complete sequence
          Length = 203474

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 24     gagattcaaataaaaacata 43
              ||||||||||||||||||||
Sbjct: 111451 gagattcaaataaaaacata 111470
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>emb|Z81516.1|CEF26H9 Caenorhabditis elegans Cosmid F26H9, complete sequence
          Length = 32263

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 37    aaacatataaacaatcaaaa 56
             ||||||||||||||||||||
Sbjct: 21253 aaacatataaacaatcaaaa 21234
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>dbj|AP004971.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT45G21, TM0151,
             complete sequence
          Length = 109264

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 314   tctcctccttcctcttcgtc 333
             ||||||||||||||||||||
Sbjct: 15532 tctcctccttcctcttcgtc 15513
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>gb|AC118599.24| Mus musculus chromosome 5, clone RP23-459G5, complete sequence
          Length = 194003

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 33     ataaaaacatataaacaatcaaaa 56
              ||||||||||||||||||| ||||
Sbjct: 171475 ataaaaacatataaacaataaaaa 171452
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>emb|AL929365.1|PF13PB1 Plasmodium falciparum chromosome 13, unmapped contig
          Length = 18168

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 27   attcaaataaaaacatataa 46
            ||||||||||||||||||||
Sbjct: 1311 attcaaataaaaacatataa 1330
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>dbj|AP006715.1| Porphyra yezoensis chloroplast DNA, complete genome
          Length = 191952

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 50    atcaaaattttacttattta 69
             ||||||||||||||||||||
Sbjct: 37121 atcaaaattttacttattta 37140
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>dbj|AP001010.4| Homo sapiens genomic DNA, chromosome 18 clone:RP11-701H16, complete
              sequence
          Length = 173709

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 59     ttacttatttaacaaatcaaacaa 82
              ||||||||||||||||| ||||||
Sbjct: 146076 ttacttatttaacaaattaaacaa 146099


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,177,727
Number of Sequences: 3902068
Number of extensions: 4177727
Number of successful extensions: 99175
Number of sequences better than 10.0: 69
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 98888
Number of HSP's gapped (non-prelim): 289
length of query: 362
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 340
effective length of database: 17,147,199,772
effective search space: 5830047922480
effective search space used: 5830047922480
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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