ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart06c10 |
|---|---|
| Clone Library Name | barley_pub |
>YX0A_CAEEL (Q11116) Hypothetical protein C03B1.10| Length = 52 Score = 33.1 bits (74), Expect = 0.40 Identities = 10/11 (90%), Positives = 11/11 (100%) Frame = +2 Query: 332 GWMDGWMDGWI 364 GWMDGWMDGW+ Sbjct: 31 GWMDGWMDGWM 41 Score = 33.1 bits (74), Expect = 0.40 Identities = 10/11 (90%), Positives = 11/11 (100%) Frame = +2 Query: 332 GWMDGWMDGWI 364 GWMDGWMDGW+ Sbjct: 27 GWMDGWMDGWM 37 Score = 33.1 bits (74), Expect = 0.40 Identities = 10/11 (90%), Positives = 11/11 (100%) Frame = +2 Query: 332 GWMDGWMDGWI 364 GWMDGWMDGW+ Sbjct: 23 GWMDGWMDGWM 33 Score = 33.1 bits (74), Expect = 0.40 Identities = 10/11 (90%), Positives = 11/11 (100%) Frame = +2 Query: 332 GWMDGWMDGWI 364 GWMDGWMDGW+ Sbjct: 19 GWMDGWMDGWM 29 Score = 31.6 bits (70), Expect = 1.2 Identities = 12/37 (32%), Positives = 22/37 (59%) Frame = +1 Query: 262 IRQANQNQKIYQIPNPQINRNEARMDGWMDGWMDQFL 372 + + N N+ + + ++ + MDGWMDGWMD ++ Sbjct: 1 MEEDNPNEVQWMEVSGRLGWMDGWMDGWMDGWMDGWM 37 Score = 31.2 bits (69), Expect = 1.5 Identities = 12/19 (63%), Positives = 15/19 (78%) Frame = +1 Query: 334 MDGWMDGWMDQFLTPSGMG 390 MDGWMDGWMD ++ G+G Sbjct: 29 MDGWMDGWMDGWM--GGLG 45 Score = 30.8 bits (68), Expect = 2.0 Identities = 10/10 (100%), Positives = 10/10 (100%) Frame = +3 Query: 333 DGWMDGWMDG 362 DGWMDGWMDG Sbjct: 30 DGWMDGWMDG 39
>K1219_HUMAN (Q86X10) Protein KIAA1219| Length = 1494 Score = 30.0 bits (66), Expect = 3.3 Identities = 20/59 (33%), Positives = 27/59 (45%) Frame = +1 Query: 130 VNNTATLANTASLIHYYRVRHWRSNTSPLISFLQRPTQTRTHQLIRQANQNQKIYQIPN 306 VN +T S H +V+H S+TSPL S P QT + A + K+ I N Sbjct: 391 VNKATMKTSTVSTAHASKVQHQTSSTSPLSS----PNQTSSEPRPLPAPRRPKVNSILN 445
>Y4VH_RHISN (Q53216) Hypothetical 24.6 kDa protein y4vH| Length = 218 Score = 30.0 bits (66), Expect = 3.3 Identities = 18/68 (26%), Positives = 29/68 (42%) Frame = +1 Query: 25 INSCTYSFCQSIDRWDTASLHHCQAAQRRYSTHKLVNNTATLANTASLIHYYRVRHWRSN 204 I C + +C+ IDR D A+L C R + + A A + + R+ Sbjct: 41 IRDCLHRYCRGIDRADEAALRSCYWPDARDNHGSYSGSAAGFIQHALNVFKTKPRNIHQL 100 Query: 205 TSPLISFL 228 T+ +I FL Sbjct: 101 TNIIIEFL 108
>TPMT_PONPY (Q5RBJ3) Thiopurine S-methyltransferase (EC 2.1.1.67) (Thiopurine| methyltransferase) Length = 245 Score = 29.6 bits (65), Expect = 4.4 Identities = 13/42 (30%), Positives = 21/42 (50%) Frame = +3 Query: 285 EDISDTESPN*S**STDGWMDGWMDGSVLDAERHGHAVLDGH 410 E+ SDTE + + W D W++G+ + GH +L H Sbjct: 11 EEYSDTEVQKNQVLTLEEWQDKWVNGNTAFHQEQGHRLLKKH 52
>SCEL_MOUSE (Q9EQG3) Sciellin| Length = 652 Score = 29.6 bits (65), Expect = 4.4 Identities = 11/24 (45%), Positives = 15/24 (62%) Frame = -1 Query: 406 PSRTACPCRSASRTDPSIHPSIHP 335 P A P +ASR DP++HP + P Sbjct: 144 PGHNASPSTAASRRDPALHPPLPP 167
>TPMT_PANTR (Q3BCR8) Thiopurine S-methyltransferase (EC 2.1.1.67) (Thiopurine| methyltransferase) Length = 245 Score = 29.3 bits (64), Expect = 5.7 Identities = 13/42 (30%), Positives = 20/42 (47%) Frame = +3 Query: 285 EDISDTESPN*S**STDGWMDGWMDGSVLDAERHGHAVLDGH 410 E+ SDTE + + W D W++G + GH +L H Sbjct: 11 EEYSDTEVQKNQVLTLEEWQDKWVNGKTAFHQEQGHQLLKKH 52
>TPMT_HUMAN (P51580) Thiopurine S-methyltransferase (EC 2.1.1.67) (Thiopurine| methyltransferase) Length = 245 Score = 29.3 bits (64), Expect = 5.7 Identities = 13/42 (30%), Positives = 20/42 (47%) Frame = +3 Query: 285 EDISDTESPN*S**STDGWMDGWMDGSVLDAERHGHAVLDGH 410 E+ SDTE + + W D W++G + GH +L H Sbjct: 11 EEYSDTEVQKNQVLTLEEWQDKWVNGKTAFHQEQGHQLLKKH 52
>TPMT_GORGO (Q3BCR3) Thiopurine S-methyltransferase (EC 2.1.1.67) (Thiopurine| methyltransferase) Length = 245 Score = 29.3 bits (64), Expect = 5.7 Identities = 13/42 (30%), Positives = 20/42 (47%) Frame = +3 Query: 285 EDISDTESPN*S**STDGWMDGWMDGSVLDAERHGHAVLDGH 410 E+ SDTE + + W D W++G + GH +L H Sbjct: 11 EEYSDTEVQKNQVLTLEEWQDKWVNGKTAFHQEQGHQLLKKH 52
>MDR4_ENTHI (P16877) Multidrug resistance protein 4 (P-glycoprotein) (Fragment)| Length = 113 Score = 29.3 bits (64), Expect = 5.7 Identities = 11/29 (37%), Positives = 17/29 (58%) Frame = +3 Query: 384 HGHAVLDGHRQRLELAVERQQLALLDEHP 470 HG +LDGH R E + R Q+ ++ + P Sbjct: 20 HGDVLLDGHNIRFEYSFLRSQIGMVGQEP 48
>K1219_MOUSE (Q8BQZ4) Protein KIAA1219| Length = 1484 Score = 28.9 bits (63), Expect = 7.5 Identities = 19/59 (32%), Positives = 27/59 (45%) Frame = +1 Query: 130 VNNTATLANTASLIHYYRVRHWRSNTSPLISFLQRPTQTRTHQLIRQANQNQKIYQIPN 306 VN +T + H +V+H S+TSPL S P QT + A + K+ I N Sbjct: 391 VNKATMKTSTVTTAHTSKVQHQASSTSPLSS----PNQTSSEPRPLPAPRRPKVNSILN 445
>CADH2_CHICK (P10288) Neural-cadherin precursor (N-cadherin) (Cadherin-2)| Length = 912 Score = 28.9 bits (63), Expect = 7.5 Identities = 14/42 (33%), Positives = 21/42 (50%) Frame = +1 Query: 202 NTSPLISFLQRPTQTRTHQLIRQANQNQKIYQIPNPQINRNE 327 N PL +Q P Q+ I + N+ Y +PNP++ R E Sbjct: 471 NQVPLAKGIQHPPQSTATVSITVIDVNESPYFVPNPKLVRQE 512
>KCNS3_RABIT (Q9TT17) Potassium voltage-gated channel subfamily S member 3| (Voltage-gated potassium channel subunit Kv9.3) (Delayed-rectifier K(+) channel alpha subunit 3) Length = 491 Score = 28.5 bits (62), Expect = 9.7 Identities = 12/35 (34%), Positives = 15/35 (42%) Frame = +1 Query: 34 CTYSFCQSIDRWDTASLHHCQAAQRRYSTHKLVNN 138 C +SFCQ I+ W L RY K N+ Sbjct: 95 CVFSFCQEIEYWGINELFIDSCCSNRYQERKEENH 129
>KCNS3_HUMAN (Q9BQ31) Potassium voltage-gated channel subfamily S member 3| (Voltage-gated potassium channel subunit Kv9.3) (Delayed-rectifier K(+) channel alpha subunit 3) Length = 491 Score = 28.5 bits (62), Expect = 9.7 Identities = 12/35 (34%), Positives = 15/35 (42%) Frame = +1 Query: 34 CTYSFCQSIDRWDTASLHHCQAAQRRYSTHKLVNN 138 C +SFCQ I+ W L RY K N+ Sbjct: 95 CVFSFCQEIEYWGINELFIDSCCSNRYQERKEENH 129
>CHLN_PHYPA (Q6YXP4) Light-independent protochlorophyllide reductase subunit N| (EC 1.18.-.-) (LI-POR subunit N) (DPOR subunit N) Length = 474 Score = 28.5 bits (62), Expect = 9.7 Identities = 24/114 (21%), Positives = 42/114 (36%), Gaps = 7/114 (6%) Frame = +1 Query: 28 NSCTYSFCQSIDRWDTASLHHCQAAQRRYSTHKLVNNTATLANTASLIHYYRVRHWRSNT 207 N Y+F Q D A H C K++ +T+ + S + + R+N+ Sbjct: 137 NGLDYAFTQGEDTVLAAMAHRCPEQNTLLDNKKVIQQDSTIQDFFSFLSLEKKEETRNNS 196 Query: 208 S-------PLISFLQRPTQTRTHQLIRQANQNQKIYQIPNPQINRNEARMDGWM 348 S PL+ F P+ T QL + ++ R ++ GW+ Sbjct: 197 SIKSKKHPPLVLFGSLPS-TVASQL--------------SSELKRQSVQVSGWL 235
>Y2038_OCEIH (Q8EPQ4) UPF0082 protein OB2038| Length = 243 Score = 28.5 bits (62), Expect = 9.7 Identities = 15/47 (31%), Positives = 24/47 (51%) Frame = +1 Query: 250 THQLIRQANQNQKIYQIPNPQINRNEARMDGWMDGWMDQFLTPSGMG 390 T+ +R A + K +PN I+RN + G +DG + +T G G Sbjct: 45 TNAALRTAVEKAKADNMPNDNIDRNIKKATGSLDGATYEEITYEGYG 91 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 60,308,410 Number of Sequences: 219361 Number of extensions: 1081568 Number of successful extensions: 3284 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 3133 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3258 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3304846491 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
