ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart06c09 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 244 bits (123), Expect = 2e-61 Identities = 219/251 (87%) Strand = Plus / Minus Query: 125 cgtagcacttcttcctgatctctccctcggctcctgtgagcacgccgacgtcgcccatct 184 |||||||||||||||||||||| || |||||||| ||||||||| |||||| |||||||| Sbjct: 16679506 cgtagcacttcttcctgatctcgccgtcggctccggtgagcacggcgacgttgcccatct 16679447 Query: 185 tgatcatggacgcgctgaagtccttcaagaactcgtcgtcaaacttgccggtggcgatgc 244 || |||||||| ||| ||||||| | |||||||||||||| ||||||||||||||||| | Sbjct: 16679446 tggtcatggactcgccgaagtccctgaagaactcgtcgtcgaacttgccggtggcgatac 16679387 Query: 245 gctggacgtagtctttggtggtggcgtcaaaaaggagcgcggagtcggagcggaagaggc 304 |||| |||||| | ||||||||||||| ||||||| || ||||||| |||||| | Sbjct: 16679386 gctgcacgtagcccctggtggtggcgtcggtgaggagcgaggcgtcggaggagaagagcc 16679327 Query: 305 ccctccgtttggcgacgtggcggtagtagctggtgtcaaaggtcttaaagctcccggggt 364 ||||||| |||||||| |||||||||||||||||||| || ||||| |||| ||||||| Sbjct: 16679326 ccctccgcttggcgacatggcggtagtagctggtgtcgaacgtcttgtagctgccggggt 16679267 Query: 365 ccatctccgac 375 ||||||||||| Sbjct: 16679266 ccatctccgac 16679256 Score = 157 bits (79), Expect = 3e-35 Identities = 205/247 (82%) Strand = Plus / Minus Query: 125 cgtagcacttcttcctgatctctccctcggctcctgtgagcacgccgacgtcgcccatct 184 ||||||||||||||||||||||||| || | || |||||||| ||||| |||||||| Sbjct: 11403508 cgtagcacttcttcctgatctctccttcctccccggtgagcacctggacgttgcccatct 11403449 Query: 185 tgatcatggacgcgctgaagtccttcaagaactcgtcgtcaaacttgccggtggcgatgc 244 || |||||||| ||| |||||| | ||||||||| |||| ||||||||||||||||| | Sbjct: 11403448 tggtcatggactcgccgaagtcgctgaagaactcggcgtcgaacttgccggtggcgatcc 11403389 Query: 245 gctggacgtagtctttggtggtggcgtcaaaaaggagcgcggagtcggagcggaagaggc 304 || | |||||||| ||||||||||||| || |||| | ||||||| |||||| | Sbjct: 11403388 gccgcacgtagtccctggtggtggcgtcggtgagcagcgacgcgtcggaggagaagagcc 11403329 Query: 305 ccctccgtttggcgacgtggcggtagtagctggtgtcaaaggtcttaaagctcccggggt 364 ||||||| || ||||| |||||||||||||||||||| || ||||| |||| || |||| Sbjct: 11403328 ccctccgcttcgcgacatggcggtagtagctggtgtcgaacgtcttgtagctgcccgggt 11403269 Query: 365 ccatctc 371 ||||||| Sbjct: 11403268 ccatctc 11403262
>dbj|AP003577.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0664F03 Length = 184242 Score = 244 bits (123), Expect = 2e-61 Identities = 219/251 (87%) Strand = Plus / Minus Query: 125 cgtagcacttcttcctgatctctccctcggctcctgtgagcacgccgacgtcgcccatct 184 |||||||||||||||||||||| || |||||||| ||||||||| |||||| |||||||| Sbjct: 30993 cgtagcacttcttcctgatctcgccgtcggctccggtgagcacggcgacgttgcccatct 30934 Query: 185 tgatcatggacgcgctgaagtccttcaagaactcgtcgtcaaacttgccggtggcgatgc 244 || |||||||| ||| ||||||| | |||||||||||||| ||||||||||||||||| | Sbjct: 30933 tggtcatggactcgccgaagtccctgaagaactcgtcgtcgaacttgccggtggcgatac 30874 Query: 245 gctggacgtagtctttggtggtggcgtcaaaaaggagcgcggagtcggagcggaagaggc 304 |||| |||||| | ||||||||||||| ||||||| || ||||||| |||||| | Sbjct: 30873 gctgcacgtagcccctggtggtggcgtcggtgaggagcgaggcgtcggaggagaagagcc 30814 Query: 305 ccctccgtttggcgacgtggcggtagtagctggtgtcaaaggtcttaaagctcccggggt 364 ||||||| |||||||| |||||||||||||||||||| || ||||| |||| ||||||| Sbjct: 30813 ccctccgcttggcgacatggcggtagtagctggtgtcgaacgtcttgtagctgccggggt 30754 Query: 365 ccatctccgac 375 ||||||||||| Sbjct: 30753 ccatctccgac 30743
>tpe|BN000609.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx80 gene for class III peroxidase 80 precursor, exons 1-2 Length = 1149 Score = 244 bits (123), Expect = 2e-61 Identities = 219/251 (87%) Strand = Plus / Minus Query: 125 cgtagcacttcttcctgatctctccctcggctcctgtgagcacgccgacgtcgcccatct 184 |||||||||||||||||||||| || |||||||| ||||||||| |||||| |||||||| Sbjct: 1138 cgtagcacttcttcctgatctcgccgtcggctccggtgagcacggcgacgttgcccatct 1079 Query: 185 tgatcatggacgcgctgaagtccttcaagaactcgtcgtcaaacttgccggtggcgatgc 244 || |||||||| ||| ||||||| | |||||||||||||| ||||||||||||||||| | Sbjct: 1078 tggtcatggactcgccgaagtccctgaagaactcgtcgtcgaacttgccggtggcgatac 1019 Query: 245 gctggacgtagtctttggtggtggcgtcaaaaaggagcgcggagtcggagcggaagaggc 304 |||| |||||| | ||||||||||||| ||||||| || ||||||| |||||| | Sbjct: 1018 gctgcacgtagcccctggtggtggcgtcggtgaggagcgaggcgtcggaggagaagagcc 959 Query: 305 ccctccgtttggcgacgtggcggtagtagctggtgtcaaaggtcttaaagctcccggggt 364 ||||||| |||||||| |||||||||||||||||||| || ||||| |||| ||||||| Sbjct: 958 ccctccgcttggcgacatggcggtagtagctggtgtcgaacgtcttgtagctgccggggt 899 Query: 365 ccatctccgac 375 ||||||||||| Sbjct: 898 ccatctccgac 888
>dbj|AP006164.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:B1386G10 Length = 121827 Score = 157 bits (79), Expect = 3e-35 Identities = 205/247 (82%) Strand = Plus / Minus Query: 125 cgtagcacttcttcctgatctctccctcggctcctgtgagcacgccgacgtcgcccatct 184 ||||||||||||||||||||||||| || | || |||||||| ||||| |||||||| Sbjct: 91217 cgtagcacttcttcctgatctctccttcctccccggtgagcacctggacgttgcccatct 91158 Query: 185 tgatcatggacgcgctgaagtccttcaagaactcgtcgtcaaacttgccggtggcgatgc 244 || |||||||| ||| |||||| | ||||||||| |||| ||||||||||||||||| | Sbjct: 91157 tggtcatggactcgccgaagtcgctgaagaactcggcgtcgaacttgccggtggcgatcc 91098 Query: 245 gctggacgtagtctttggtggtggcgtcaaaaaggagcgcggagtcggagcggaagaggc 304 || | |||||||| ||||||||||||| || |||| | ||||||| |||||| | Sbjct: 91097 gccgcacgtagtccctggtggtggcgtcggtgagcagcgacgcgtcggaggagaagagcc 91038 Query: 305 ccctccgtttggcgacgtggcggtagtagctggtgtcaaaggtcttaaagctcccggggt 364 ||||||| || ||||| |||||||||||||||||||| || ||||| |||| || |||| Sbjct: 91037 ccctccgcttcgcgacatggcggtagtagctggtgtcgaacgtcttgtagctgcccgggt 90978 Query: 365 ccatctc 371 ||||||| Sbjct: 90977 ccatctc 90971
>tpe|BN000607.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx78 gene for class III peroxidase 78 precursor, exons 1-2 Length = 1093 Score = 157 bits (79), Expect = 3e-35 Identities = 205/247 (82%) Strand = Plus / Minus Query: 125 cgtagcacttcttcctgatctctccctcggctcctgtgagcacgccgacgtcgcccatct 184 ||||||||||||||||||||||||| || | || |||||||| ||||| |||||||| Sbjct: 1079 cgtagcacttcttcctgatctctccttcctccccggtgagcacctggacgttgcccatct 1020 Query: 185 tgatcatggacgcgctgaagtccttcaagaactcgtcgtcaaacttgccggtggcgatgc 244 || |||||||| ||| |||||| | ||||||||| |||| ||||||||||||||||| | Sbjct: 1019 tggtcatggactcgccgaagtcgctgaagaactcggcgtcgaacttgccggtggcgatcc 960 Query: 245 gctggacgtagtctttggtggtggcgtcaaaaaggagcgcggagtcggagcggaagaggc 304 || | |||||||| ||||||||||||| || |||| | ||||||| |||||| | Sbjct: 959 gccgcacgtagtccctggtggtggcgtcggtgagcagcgacgcgtcggaggagaagagcc 900 Query: 305 ccctccgtttggcgacgtggcggtagtagctggtgtcaaaggtcttaaagctcccggggt 364 ||||||| || ||||| |||||||||||||||||||| || ||||| |||| || |||| Sbjct: 899 ccctccgcttcgcgacatggcggtagtagctggtgtcgaacgtcttgtagctgcccgggt 840 Query: 365 ccatctc 371 ||||||| Sbjct: 839 ccatctc 833
>gb|AC125783.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBb0039K08, complete sequence Length = 122163 Score = 77.8 bits (39), Expect = 2e-11 Identities = 57/63 (90%) Strand = Plus / Minus Query: 125 cgtagcacttcttcctgatctctccctcggctcctgtgagcacgccgacgtcgcccatct 184 |||||||||||||||||||||| || ||| | || ||||||||||||||| ||||||||| Sbjct: 17988 cgtagcacttcttcctgatctcgccttcgccgccggtgagcacgccgacgccgcccatct 17929 Query: 185 tga 187 ||| Sbjct: 17928 tga 17926 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Minus Query: 352 aagctcccggggtccatctccg 373 |||||||||||||||||||||| Sbjct: 17761 aagctcccggggtccatctccg 17740
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 77.8 bits (39), Expect = 2e-11 Identities = 57/63 (90%) Strand = Plus / Minus Query: 125 cgtagcacttcttcctgatctctccctcggctcctgtgagcacgccgacgtcgcccatct 184 |||||||||||||||||||||| || ||| | || ||||||||||||||| ||||||||| Sbjct: 25705645 cgtagcacttcttcctgatctcgccttcgccgccggtgagcacgccgacgccgcccatct 25705586 Query: 185 tga 187 ||| Sbjct: 25705585 tga 25705583 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Minus Query: 352 aagctcccggggtccatctccg 373 |||||||||||||||||||||| Sbjct: 25705418 aagctcccggggtccatctccg 25705397
>dbj|AK108713.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-150-B05, full insert sequence Length = 1346 Score = 77.8 bits (39), Expect = 2e-11 Identities = 57/63 (90%) Strand = Plus / Minus Query: 125 cgtagcacttcttcctgatctctccctcggctcctgtgagcacgccgacgtcgcccatct 184 |||||||||||||||||||||| || ||| | || ||||||||||||||| ||||||||| Sbjct: 1092 cgtagcacttcttcctgatctcgccttcgccgccggtgagcacgccgacgccgcccatct 1033 Query: 185 tga 187 ||| Sbjct: 1032 tga 1030 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Minus Query: 352 aagctcccggggtccatctccg 373 |||||||||||||||||||||| Sbjct: 865 aagctcccggggtccatctccg 844
>tpe|BN000663.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx134 gene for class III peroxidase 134 precursor, exons 1-2 Length = 1524 Score = 77.8 bits (39), Expect = 2e-11 Identities = 57/63 (90%) Strand = Plus / Minus Query: 125 cgtagcacttcttcctgatctctccctcggctcctgtgagcacgccgacgtcgcccatct 184 |||||||||||||||||||||| || ||| | || ||||||||||||||| ||||||||| Sbjct: 1513 cgtagcacttcttcctgatctcgccttcgccgccggtgagcacgccgacgccgcccatct 1454 Query: 185 tga 187 ||| Sbjct: 1453 tga 1451 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Minus Query: 352 aagctcccggggtccatctccg 373 |||||||||||||||||||||| Sbjct: 1286 aagctcccggggtccatctccg 1265
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 77.8 bits (39), Expect = 2e-11 Identities = 57/63 (90%) Strand = Plus / Minus Query: 125 cgtagcacttcttcctgatctctccctcggctcctgtgagcacgccgacgtcgcccatct 184 |||||||||||||||||||||| || ||| | || ||||||||||||||| ||||||||| Sbjct: 26024315 cgtagcacttcttcctgatctcgccttcgccgccggtgagcacgccgacgccgcccatct 26024256 Query: 185 tga 187 ||| Sbjct: 26024255 tga 26024253 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Minus Query: 352 aagctcccggggtccatctccg 373 |||||||||||||||||||||| Sbjct: 26024088 aagctcccggggtccatctccg 26024067
>gb|AY751451.1| Panicum virgatum cultivar Nebraska-28 genomic sequence Length = 382 Score = 65.9 bits (33), Expect = 9e-08 Identities = 66/77 (85%) Strand = Plus / Minus Query: 296 ggaagaggcccctccgtttggcgacgtggcggtagtagctggtgtcaaaggtcttaaagc 355 ||||||||||||| || |||| ||||||| |||||||||| ||| |||||||| |||| Sbjct: 249 ggaagaggcccctgcgcctggccacgtggccgtagtagctgaggtcgaaggtcttgaagc 190 Query: 356 tcccggggtccatctcc 372 | || |||||||||||| Sbjct: 189 tgcccgggtccatctcc 173
>gb|AY751450.1| Cynodon dactylon var. aridus cultivar Midlawn genomic sequence Length = 498 Score = 65.9 bits (33), Expect = 9e-08 Identities = 66/77 (85%) Strand = Plus / Minus Query: 296 ggaagaggcccctccgtttggcgacgtggcggtagtagctggtgtcaaaggtcttaaagc 355 |||| ||||||||||| ||||||||||||| ||||||| | ||| |||||||| |||| Sbjct: 378 ggaacaggcccctccgcttggcgacgtggccgtagtagttcaggtcgaaggtcttgaagc 319 Query: 356 tcccggggtccatctcc 372 | || |||||||||||| Sbjct: 318 tgcccgggtccatctcc 302
>ref|XM_476365.1| Oryza sativa (japonica cultivar-group), mRNA Length = 744 Score = 56.0 bits (28), Expect = 8e-05 Identities = 79/96 (82%) Strand = Plus / Minus Query: 280 agcgcggagtcggagcggaagaggcccctccgtttggcgacgtggcggtagtagctggtg 339 ||||||||||||||| |||||| ||| | || ||||| || | ||||||||||||| | Sbjct: 350 agcgcggagtcggagtggaagatgccgcggcgcttggccaccagccggtagtagctggcg 291 Query: 340 tcaaaggtcttaaagctcccggggtccatctccgac 375 || ||||| ||||| |||||||||||||||||| Sbjct: 290 tcgaaggtgaggaagctgccggggtccatctccgac 255 Score = 44.1 bits (22), Expect = 0.32 Identities = 40/46 (86%) Strand = Plus / Minus Query: 123 ggcgtagcacttcttcctgatctctccctcggctcctgtgagcacg 168 |||||||||||| ||||||||||| |||| || || ||||||||| Sbjct: 507 ggcgtagcacttgttcctgatctcgccctgcgccccggtgagcacg 462
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 56.0 bits (28), Expect = 8e-05 Identities = 79/96 (82%) Strand = Plus / Minus Query: 280 agcgcggagtcggagcggaagaggcccctccgtttggcgacgtggcggtagtagctggtg 339 ||||||||||||||| |||||| ||| | || ||||| || | ||||||||||||| | Sbjct: 235935 agcgcggagtcggagtggaagatgccgcggcgcttggccaccagccggtagtagctggcg 235876 Query: 340 tcaaaggtcttaaagctcccggggtccatctccgac 375 || ||||| ||||| |||||||||||||||||| Sbjct: 235875 tcgaaggtgaggaagctgccggggtccatctccgac 235840 Score = 44.1 bits (22), Expect = 0.32 Identities = 46/54 (85%) Strand = Plus / Minus Query: 141 gatctctccctcggctcctgtgagcacgccgacgtcgcccatcttgatcatgga 194 |||||| |||| | |||| ||||||||||||| | |||||||||| | |||||| Sbjct: 252834 gatctcgccctggtctcccgtgagcacgccgatggcgcccatcttcaccatgga 252781 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Minus Query: 352 aagctcccggggtccatctccg 373 |||||||||||||||||||||| Sbjct: 252623 aagctcccggggtccatctccg 252602 Score = 44.1 bits (22), Expect = 0.32 Identities = 40/46 (86%) Strand = Plus / Minus Query: 123 ggcgtagcacttcttcctgatctctccctcggctcctgtgagcacg 168 |||||||||||| ||||||||||| |||| || || ||||||||| Sbjct: 236092 ggcgtagcacttgttcctgatctcgccctgcgccccggtgagcacg 236047 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 288 gtcggagcggaagaggcccctccg 311 ||||||| |||||||||||||||| Sbjct: 20751495 gtcggagtggaagaggcccctccg 20751472
>dbj|AP005187.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0446F04 Length = 175390 Score = 56.0 bits (28), Expect = 8e-05 Identities = 79/96 (82%) Strand = Plus / Minus Query: 280 agcgcggagtcggagcggaagaggcccctccgtttggcgacgtggcggtagtagctggtg 339 ||||||||||||||| |||||| ||| | || ||||| || | ||||||||||||| | Sbjct: 70799 agcgcggagtcggagtggaagatgccgcggcgcttggccaccagccggtagtagctggcg 70740 Query: 340 tcaaaggtcttaaagctcccggggtccatctccgac 375 || ||||| ||||| |||||||||||||||||| Sbjct: 70739 tcgaaggtgaggaagctgccggggtccatctccgac 70704 Score = 44.1 bits (22), Expect = 0.32 Identities = 46/54 (85%) Strand = Plus / Minus Query: 141 gatctctccctcggctcctgtgagcacgccgacgtcgcccatcttgatcatgga 194 |||||| |||| | |||| ||||||||||||| | |||||||||| | |||||| Sbjct: 87698 gatctcgccctggtctcccgtgagcacgccgatggcgcccatcttcaccatgga 87645 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Minus Query: 352 aagctcccggggtccatctccg 373 |||||||||||||||||||||| Sbjct: 87487 aagctcccggggtccatctccg 87466 Score = 44.1 bits (22), Expect = 0.32 Identities = 40/46 (86%) Strand = Plus / Minus Query: 123 ggcgtagcacttcttcctgatctctccctcggctcctgtgagcacg 168 |||||||||||| ||||||||||| |||| || || ||||||||| Sbjct: 70956 ggcgtagcacttgttcctgatctcgccctgcgccccggtgagcacg 70911
>dbj|AK107894.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-134-E12, full insert sequence Length = 744 Score = 56.0 bits (28), Expect = 8e-05 Identities = 79/96 (82%) Strand = Plus / Minus Query: 280 agcgcggagtcggagcggaagaggcccctccgtttggcgacgtggcggtagtagctggtg 339 ||||||||||||||| |||||| ||| | || ||||| || | ||||||||||||| | Sbjct: 350 agcgcggagtcggagtggaagatgccgcggcgcttggccaccagccggtagtagctggcg 291 Query: 340 tcaaaggtcttaaagctcccggggtccatctccgac 375 || ||||| ||||| |||||||||||||||||| Sbjct: 290 tcgaaggtgaggaagctgccggggtccatctccgac 255 Score = 44.1 bits (22), Expect = 0.32 Identities = 40/46 (86%) Strand = Plus / Minus Query: 123 ggcgtagcacttcttcctgatctctccctcggctcctgtgagcacg 168 |||||||||||| ||||||||||| |||| || || ||||||||| Sbjct: 507 ggcgtagcacttgttcctgatctcgccctgcgccccggtgagcacg 462
>tpe|BN000626.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx97 gene for class III peroxidase 97 precursor, exons 1-2 Length = 1107 Score = 56.0 bits (28), Expect = 8e-05 Identities = 79/96 (82%) Strand = Plus / Minus Query: 280 agcgcggagtcggagcggaagaggcccctccgtttggcgacgtggcggtagtagctggtg 339 ||||||||||||||| |||||| ||| | || ||||| || | ||||||||||||| | Sbjct: 938 agcgcggagtcggagtggaagatgccgcggcgcttggccaccagccggtagtagctggcg 879 Query: 340 tcaaaggtcttaaagctcccggggtccatctccgac 375 || ||||| ||||| |||||||||||||||||| Sbjct: 878 tcgaaggtgaggaagctgccggggtccatctccgac 843 Score = 44.1 bits (22), Expect = 0.32 Identities = 40/46 (86%) Strand = Plus / Minus Query: 123 ggcgtagcacttcttcctgatctctccctcggctcctgtgagcacg 168 |||||||||||| ||||||||||| |||| || || ||||||||| Sbjct: 1095 ggcgtagcacttgttcctgatctcgccctgcgccccggtgagcacg 1050
>ref|XM_473984.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 987 Score = 54.0 bits (27), Expect = 3e-04 Identities = 51/59 (86%) Strand = Plus / Minus Query: 314 tggcgacgtggcggtagtagctggtgtcaaaggtcttaaagctcccggggtccatctcc 372 |||||| ||| | ||||||||||||||| || ||| | |||||||| |||||||||||| Sbjct: 784 tggcgatgtgcctgtagtagctggtgtcgaacgtcctgaagctccccgggtccatctcc 726
>gb|AC113332.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1057_B02, complete sequence Length = 99795 Score = 54.0 bits (27), Expect = 3e-04 Identities = 59/67 (88%), Gaps = 2/67 (2%) Strand = Plus / Minus Query: 129 gcacttcttcctgatctctccctcggct-cctgtgagcacgccgacgtcgcccatcttga 187 |||||||||||||||||| |||| |||| || |||||||| ||||| |||||||||||| Sbjct: 42123 gcacttcttcctgatctcgccct-ggctgccggtgagcacttcgacgccgcccatcttga 42065 Query: 188 tcatgga 194 |||||| Sbjct: 42064 ccatgga 42058
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 54.0 bits (27), Expect = 3e-04 Identities = 51/59 (86%) Strand = Plus / Minus Query: 314 tggcgacgtggcggtagtagctggtgtcaaaggtcttaaagctcccggggtccatctcc 372 |||||| ||| | ||||||||||||||| || ||| | |||||||| |||||||||||| Sbjct: 32006537 tggcgatgtgcctgtagtagctggtgtcgaacgtcctgaagctccccgggtccatctcc 32006479
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 54.0 bits (27), Expect = 3e-04 Identities = 59/67 (88%), Gaps = 2/67 (2%) Strand = Plus / Minus Query: 129 gcacttcttcctgatctctccctcggct-cctgtgagcacgccgacgtcgcccatcttga 187 |||||||||||||||||| |||| |||| || |||||||| ||||| |||||||||||| Sbjct: 24439450 gcacttcttcctgatctcgccct-ggctgccggtgagcacttcgacgccgcccatcttga 24439392 Query: 188 tcatgga 194 |||||| Sbjct: 24439391 ccatgga 24439385 Score = 52.0 bits (26), Expect = 0.001 Identities = 50/58 (86%) Strand = Plus / Minus Query: 128 agcacttcttcctgatctctccctcggctcctgtgagcacgccgacgtcgcccatctt 185 ||||||||| ||||||||||||||| | || ||||||||| ||| || ||||||||| Sbjct: 2014689 agcacttctctctgatctctccctcgtcacccgtgagcacgtcgatgttgcccatctt 2014632
>dbj|D14997.1|RICPEROX Oryza sativa (japonica cultivar-group) mRNA for peroxidase, complete cds Length = 1325 Score = 54.0 bits (27), Expect = 3e-04 Identities = 59/67 (88%), Gaps = 2/67 (2%) Strand = Plus / Minus Query: 129 gcacttcttcctgatctctccctcggct-cctgtgagcacgccgacgtcgcccatcttga 187 |||||||||||||||||| |||| |||| || |||||||| ||||| |||||||||||| Sbjct: 1031 gcacttcttcctgatctcgccct-ggctgccggtgagcacttcgacgccgcccatcttga 973 Query: 188 tcatgga 194 |||||| Sbjct: 972 ccatgga 966
>dbj|AK104950.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-110-A02, full insert sequence Length = 1347 Score = 54.0 bits (27), Expect = 3e-04 Identities = 59/67 (88%), Gaps = 2/67 (2%) Strand = Plus / Minus Query: 129 gcacttcttcctgatctctccctcggct-cctgtgagcacgccgacgtcgcccatcttga 187 |||||||||||||||||| |||| |||| || |||||||| ||||| |||||||||||| Sbjct: 1060 gcacttcttcctgatctcgccct-ggctgccggtgagcacttcgacgccgcccatcttga 1002 Query: 188 tcatgga 194 |||||| Sbjct: 1001 ccatgga 995
>dbj|AK068148.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013134G11, full insert sequence Length = 3544 Score = 54.0 bits (27), Expect = 3e-04 Identities = 51/59 (86%) Strand = Plus / Minus Query: 314 tggcgacgtggcggtagtagctggtgtcaaaggtcttaaagctcccggggtccatctcc 372 |||||| ||| | ||||||||||||||| || ||| | |||||||| |||||||||||| Sbjct: 3155 tggcgatgtgcctgtagtagctggtgtcgaacgtcctgaagctccccgggtccatctcc 3097
>dbj|AK066855.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013082J20, full insert sequence Length = 1348 Score = 54.0 bits (27), Expect = 3e-04 Identities = 59/67 (88%), Gaps = 2/67 (2%) Strand = Plus / Minus Query: 129 gcacttcttcctgatctctccctcggct-cctgtgagcacgccgacgtcgcccatcttga 187 |||||||||||||||||| |||| |||| || |||||||| ||||| |||||||||||| Sbjct: 1061 gcacttcttcctgatctcgccct-ggctgccggtgagcacttcgacgccgcccatcttga 1003 Query: 188 tcatgga 194 |||||| Sbjct: 1002 ccatgga 996
>tpe|BN000603.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx74 gene for class III peroxidase 74 precursor, exons 1-4 Length = 1311 Score = 54.0 bits (27), Expect = 3e-04 Identities = 59/67 (88%), Gaps = 2/67 (2%) Strand = Plus / Minus Query: 129 gcacttcttcctgatctctccctcggct-cctgtgagcacgccgacgtcgcccatcttga 187 |||||||||||||||||| |||| |||| || |||||||| ||||| |||||||||||| Sbjct: 1296 gcacttcttcctgatctcgccct-ggctgccggtgagcacttcgacgccgcccatcttga 1238 Query: 188 tcatgga 194 |||||| Sbjct: 1237 ccatgga 1231
>tpe|BN000585.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx56 gene for class III peroxidase 56 precursor, exons 1-4 Length = 1918 Score = 54.0 bits (27), Expect = 3e-04 Identities = 51/59 (86%) Strand = Plus / Minus Query: 314 tggcgacgtggcggtagtagctggtgtcaaaggtcttaaagctcccggggtccatctcc 372 |||||| ||| | ||||||||||||||| || ||| | |||||||| |||||||||||| Sbjct: 1715 tggcgatgtgcctgtagtagctggtgtcgaacgtcctgaagctccccgggtccatctcc 1657
>emb|AL662988.4|OSJN00186 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0089N06, complete sequence Length = 141752 Score = 54.0 bits (27), Expect = 3e-04 Identities = 51/59 (86%) Strand = Plus / Minus Query: 314 tggcgacgtggcggtagtagctggtgtcaaaggtcttaaagctcccggggtccatctcc 372 |||||| ||| | ||||||||||||||| || ||| | |||||||| |||||||||||| Sbjct: 27244 tggcgatgtgcctgtagtagctggtgtcgaacgtcctgaagctccccgggtccatctcc 27186
>ref|NM_197545.1| Oryza sativa (japonica cultivar-group) putative peroxidase (OSJNBa0040D23.2), mRNA Length = 1204 Score = 52.0 bits (26), Expect = 0.001 Identities = 32/34 (94%) Strand = Plus / Minus Query: 160 gtgagcacgccgacgtcgcccatcttgatcatgg 193 ||||||||||||||| |||||||||||| ||||| Sbjct: 1025 gtgagcacgccgacggcgcccatcttgaccatgg 992
>gb|AC087552.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0519E07, complete sequence Length = 151399 Score = 52.0 bits (26), Expect = 0.001 Identities = 50/58 (86%) Strand = Plus / Minus Query: 128 agcacttcttcctgatctctccctcggctcctgtgagcacgccgacgtcgcccatctt 185 ||||||||| ||||||||||||||| | || ||||||||| ||| || ||||||||| Sbjct: 107566 agcacttctctctgatctctccctcgtcacccgtgagcacgtcgatgttgcccatctt 107509
>gb|AC092697.6| Oryza sativa chromosome 10 BAC OSJNBb0060I05 genomic sequence, complete sequence Length = 105841 Score = 52.0 bits (26), Expect = 0.001 Identities = 32/34 (94%) Strand = Plus / Minus Query: 160 gtgagcacgccgacgtcgcccatcttgatcatgg 193 ||||||||||||||| |||||||||||| ||||| Sbjct: 98369 gtgagcacgccgacggcgcccatcttgaccatgg 98336
>gb|AC074196.14| Oryza sativa chromosome 10 BAC OSJNBa0040D23 genomic sequence, complete sequence Length = 134102 Score = 52.0 bits (26), Expect = 0.001 Identities = 32/34 (94%) Strand = Plus / Minus Query: 160 gtgagcacgccgacgtcgcccatcttgatcatgg 193 ||||||||||||||| |||||||||||| ||||| Sbjct: 23015 gtgagcacgccgacggcgcccatcttgaccatgg 22982
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 52.0 bits (26), Expect = 0.001 Identities = 32/34 (94%) Strand = Plus / Minus Query: 160 gtgagcacgccgacgtcgcccatcttgatcatgg 193 ||||||||||||||| |||||||||||| ||||| Sbjct: 20382867 gtgagcacgccgacggcgcccatcttgaccatgg 20382834
>dbj|AK105708.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-201-E05, full insert sequence Length = 1422 Score = 52.0 bits (26), Expect = 0.001 Identities = 32/34 (94%) Strand = Plus / Minus Query: 160 gtgagcacgccgacgtcgcccatcttgatcatgg 193 ||||||||||||||| |||||||||||| ||||| Sbjct: 1134 gtgagcacgccgacggcgcccatcttgaccatgg 1101
>dbj|AK063587.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-118-A08, full insert sequence Length = 826 Score = 52.0 bits (26), Expect = 0.001 Identities = 50/58 (86%) Strand = Plus / Minus Query: 128 agcacttcttcctgatctctccctcggctcctgtgagcacgccgacgtcgcccatctt 185 ||||||||| ||||||||||||||| | || ||||||||| ||| || ||||||||| Sbjct: 612 agcacttctctctgatctctccctcgtcacccgtgagcacgtcgatgttgcccatctt 555
>tpe|BN000657.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx128 gene for class III peroxidase 128 precursor, exons 1-3 Length = 1794 Score = 52.0 bits (26), Expect = 0.001 Identities = 32/34 (94%) Strand = Plus / Minus Query: 160 gtgagcacgccgacgtcgcccatcttgatcatgg 193 ||||||||||||||| |||||||||||| ||||| Sbjct: 1751 gtgagcacgccgacggcgcccatcttgaccatgg 1718
>tpe|BN000599.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx70 gene for class III peroxidase 70 precursor, exons 1-2 Length = 1356 Score = 52.0 bits (26), Expect = 0.001 Identities = 50/58 (86%) Strand = Plus / Minus Query: 128 agcacttcttcctgatctctccctcggctcctgtgagcacgccgacgtcgcccatctt 185 ||||||||| ||||||||||||||| | || ||||||||| ||| || ||||||||| Sbjct: 1333 agcacttctctctgatctctccctcgtcacccgtgagcacgtcgatgttgcccatctt 1276
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 52.0 bits (26), Expect = 0.001 Identities = 32/34 (94%) Strand = Plus / Minus Query: 160 gtgagcacgccgacgtcgcccatcttgatcatgg 193 ||||||||||||||| |||||||||||| ||||| Sbjct: 20394139 gtgagcacgccgacggcgcccatcttgaccatgg 20394106
>ref|NM_183816.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1062 Score = 44.1 bits (22), Expect = 0.32 Identities = 31/34 (91%) Strand = Plus / Minus Query: 160 gtgagcacgccgacgtcgcccatcttgatcatgg 193 ||||||||| ||| || ||||||||||||||||| Sbjct: 932 gtgagcacgtcgatgttgcccatcttgatcatgg 899
>ref|XM_476366.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1050 Score = 44.1 bits (22), Expect = 0.32 Identities = 46/54 (85%) Strand = Plus / Minus Query: 141 gatctctccctcggctcctgtgagcacgccgacgtcgcccatcttgatcatgga 194 |||||| |||| | |||| ||||||||||||| | |||||||||| | |||||| Sbjct: 1017 gatctcgccctggtctcccgtgagcacgccgatggcgcccatcttcaccatgga 964 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Minus Query: 352 aagctcccggggtccatctccg 373 |||||||||||||||||||||| Sbjct: 806 aagctcccggggtccatctccg 785
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 44.1 bits (22), Expect = 0.32 Identities = 46/54 (85%) Strand = Plus / Plus Query: 133 ttcttcctgatctctccctcggctcctgtgagcacgccgacgtcgcccatcttg 186 ||||||| |||||| |||| | | || ||||||||||||||| |||||||||| Sbjct: 20926204 ttcttccggatctcgccctggtcgccggtgagcacgccgacgcggcccatcttg 20926257
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 44.1 bits (22), Expect = 0.32 Identities = 31/34 (91%) Strand = Plus / Minus Query: 160 gtgagcacgccgacgtcgcccatcttgatcatgg 193 ||||||||| ||| || ||||||||||||||||| Sbjct: 12552426 gtgagcacgtcgatgttgcccatcttgatcatgg 12552393
>dbj|AP002971.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0537A05 Length = 152396 Score = 44.1 bits (22), Expect = 0.32 Identities = 31/34 (91%) Strand = Plus / Minus Query: 160 gtgagcacgccgacgtcgcccatcttgatcatgg 193 ||||||||| ||| || ||||||||||||||||| Sbjct: 64036 gtgagcacgtcgatgttgcccatcttgatcatgg 64003
>dbj|AP004358.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1135C02 Length = 152306 Score = 44.1 bits (22), Expect = 0.32 Identities = 31/34 (91%) Strand = Plus / Minus Query: 160 gtgagcacgccgacgtcgcccatcttgatcatgg 193 ||||||||| ||| || ||||||||||||||||| Sbjct: 138041 gtgagcacgtcgatgttgcccatcttgatcatgg 138008
>dbj|AP004673.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0617C02 Length = 135605 Score = 44.1 bits (22), Expect = 0.32 Identities = 46/54 (85%) Strand = Plus / Minus Query: 141 gatctctccctcggctcctgtgagcacgccgacgtcgcccatcttgatcatgga 194 |||||| |||| | |||| ||||||||||||| | |||||||||| | |||||| Sbjct: 4833 gatctcgccctggtctcccgtgagcacgccgatggcgcccatcttcaccatgga 4780 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Minus Query: 352 aagctcccggggtccatctccg 373 |||||||||||||||||||||| Sbjct: 4622 aagctcccggggtccatctccg 4601
>dbj|AK109551.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-124-A03, full insert sequence Length = 1325 Score = 44.1 bits (22), Expect = 0.32 Identities = 46/54 (85%) Strand = Plus / Minus Query: 133 ttcttcctgatctctccctcggctcctgtgagcacgccgacgtcgcccatcttg 186 ||||||| |||||| |||| | | || ||||||||||||||| |||||||||| Sbjct: 1106 ttcttccggatctcgccctggtcgccggtgagcacgccgacgcggcccatcttg 1053
>dbj|AK070715.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023058L02, full insert sequence Length = 1492 Score = 44.1 bits (22), Expect = 0.32 Identities = 31/34 (91%) Strand = Plus / Minus Query: 160 gtgagcacgccgacgtcgcccatcttgatcatgg 193 ||||||||| ||| || ||||||||||||||||| Sbjct: 1007 gtgagcacgtcgatgttgcccatcttgatcatgg 974
>dbj|AK059977.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-212-B01, full insert sequence Length = 1015 Score = 44.1 bits (22), Expect = 0.32 Identities = 31/34 (91%) Strand = Plus / Minus Query: 160 gtgagcacgccgacgtcgcccatcttgatcatgg 193 ||||||||| ||| || ||||||||||||||||| Sbjct: 696 gtgagcacgtcgatgttgcccatcttgatcatgg 663
>gb|AY108615.1| Zea mays PCO132912 mRNA sequence Length = 1231 Score = 44.1 bits (22), Expect = 0.32 Identities = 31/34 (91%) Strand = Plus / Minus Query: 160 gtgagcacgccgacgtcgcccatcttgatcatgg 193 ||||||||||||||| ||||||||||| ||||| Sbjct: 926 gtgagcacgccgacggagcccatcttgaccatgg 893
>tpe|BN000667.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx138 gene for class III peroxidase 138 precursor, exons 1-4 Length = 9140 Score = 44.1 bits (22), Expect = 0.32 Identities = 46/54 (85%) Strand = Plus / Minus Query: 133 ttcttcctgatctctccctcggctcctgtgagcacgccgacgtcgcccatcttg 186 ||||||| |||||| |||| | | || ||||||||||||||| |||||||||| Sbjct: 9115 ttcttccggatctcgccctggtcgccggtgagcacgccgacgcggcccatcttg 9062
>tpe|BN000623.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx94 gene for class III peroxidase 94 precursor, exon 1 Length = 1050 Score = 44.1 bits (22), Expect = 0.32 Identities = 46/54 (85%) Strand = Plus / Minus Query: 141 gatctctccctcggctcctgtgagcacgccgacgtcgcccatcttgatcatgga 194 |||||| |||| | |||| ||||||||||||| | |||||||||| | |||||| Sbjct: 1017 gatctcgccctggtctcccgtgagcacgccgatggcgcccatcttcaccatgga 964 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Minus Query: 352 aagctcccggggtccatctccg 373 |||||||||||||||||||||| Sbjct: 806 aagctcccggggtccatctccg 785
>tpe|BN000544.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx15 gene for class III peroxidase 15 precursor, exons 1-3 Length = 5322 Score = 44.1 bits (22), Expect = 0.32 Identities = 31/34 (91%) Strand = Plus / Minus Query: 160 gtgagcacgccgacgtcgcccatcttgatcatgg 193 ||||||||| ||| || ||||||||||||||||| Sbjct: 5192 gtgagcacgtcgatgttgcccatcttgatcatgg 5159
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 44.1 bits (22), Expect = 0.32 Identities = 46/54 (85%) Strand = Plus / Plus Query: 133 ttcttcctgatctctccctcggctcctgtgagcacgccgacgtcgcccatcttg 186 ||||||| |||||| |||| | | || ||||||||||||||| |||||||||| Sbjct: 20852418 ttcttccggatctcgccctggtcgccggtgagcacgccgacgcggcccatcttg 20852471
>emb|AL713943.3|CNS07YPC Oryza sativa chromosome 12, . BAC OSJNBa0030G16 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 182172 Score = 44.1 bits (22), Expect = 0.32 Identities = 46/54 (85%) Strand = Plus / Plus Query: 133 ttcttcctgatctctccctcggctcctgtgagcacgccgacgtcgcccatcttg 186 ||||||| |||||| |||| | | || ||||||||||||||| |||||||||| Sbjct: 11694 ttcttccggatctcgccctggtcgccggtgagcacgccgacgcggcccatcttg 11747
>emb|AL731880.3|CNS08C8J Oryza sativa chromosome 12, . BAC OSJNBa0035E02 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 107819 Score = 44.1 bits (22), Expect = 0.32 Identities = 46/54 (85%) Strand = Plus / Minus Query: 133 ttcttcctgatctctccctcggctcctgtgagcacgccgacgtcgcccatcttg 186 ||||||| |||||| |||| | | || ||||||||||||||| |||||||||| Sbjct: 32791 ttcttccggatctcgccctggtcgccggtgagcacgccgacgcggcccatcttg 32738
>ref|XM_478531.1| Oryza sativa (japonica cultivar-group), mRNA Length = 971 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 288 gtcggagcggaagaggcccctccg 311 ||||||| |||||||||||||||| Sbjct: 685 gtcggagtggaagaggcccctccg 662
>ref|XM_478530.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1225 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 288 gtcggagcggaagaggcccctccg 311 ||||||| |||||||||||||||| Sbjct: 939 gtcggagtggaagaggcccctccg 916
>ref|XM_514021.1| PREDICTED: Pan troglodytes LOC457544 (LOC457544), mRNA Length = 6621 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 ggagcgcggagtcggagcgg 297 |||||||||||||||||||| Sbjct: 692 ggagcgcggagtcggagcgg 673
>ref|XM_589978.1| PREDICTED: Bos taurus aquaporin 2 (aqp2), mRNA Length = 816 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 219 gtcgtcaaacttgccggtggcgat 242 ||||||||||||||||||| |||| Sbjct: 600 gtcgtcaaacttgccggtgacgat 577
>gb|AC185539.1| Drosophila melanogaster clone BACR22O16, complete sequence Length = 180099 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 344 aggtcttaaagctcccggggtcca 367 ||||||||||| |||||||||||| Sbjct: 119316 aggtcttaaagttcccggggtcca 119339
>gb|AC185536.1| Drosophila melanogaster clone BACR38K14, complete sequence Length = 185823 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 344 aggtcttaaagctcccggggtcca 367 ||||||||||| |||||||||||| Sbjct: 43072 aggtcttaaagttcccggggtcca 43095
>emb|AL732314.18| Human DNA sequence from clone RP13-465B17 on chromosome X Contains the 5' end of the gene for protein phosphatase 2A 48 kDa regulatory subunit (PR48), a fatty acid binding protein 5 (psoriasis-associated) (FABP5) pseudogene, a pseudogene similar to part of keratin 18 (KRT18) and nine CpG islands, complete sequence Length = 218723 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 133 ttcttcctgatctctccctc 152 |||||||||||||||||||| Sbjct: 99588 ttcttcctgatctctccctc 99569
>emb|AL731537.8| Human DNA sequence from clone RP11-96B5 on chromosome 10 Contains a novel pseudogene, the 5' end of the PRKG1 gene for protein kinase cGMP-dependent type I, a novel gene and two CpG islands, complete sequence Length = 189082 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 10 aataattcactaagtaacat 29 |||||||||||||||||||| Sbjct: 17895 aataattcactaagtaacat 17914
>gb|DQ432488.1| Uncultured archaeon clone WN-FSA-175 16S ribosomal RNA gene, partial sequence Length = 747 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 ggggataataccagatagac 72 |||||||||||||||||||| Sbjct: 90 ggggataataccagatagac 109
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence Length = 3806533 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 162 gagcacgccgacgtcgcccatctt 185 ||||||||||| |||||||||||| Sbjct: 1587252 gagcacgccgaggtcgcccatctt 1587275 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 162 gagcacgccgacgtcgcccatctt 185 ||||||||||| |||||||||||| Sbjct: 160869 gagcacgccgaggtcgcccatctt 160846
>emb|AL021398.1|HS964D12 Human DNA sequence from clone RP5-964D12 on chromosome 1q24-25 Contains the 5' end of the ASTN gene for astrotactin and the 5' end of the gene for a novel protein (KIAA1747, LOC57795), complete sequence Length = 146963 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 ggagcgcggagtcggagcgg 297 |||||||||||||||||||| Sbjct: 52033 ggagcgcggagtcggagcgg 52014
>ref|XM_971027.1| PREDICTED: Tribolium castaneum similar to CG10374-PA, isoform A, transcript variant 2 (LOC660518), mRNA Length = 988 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 249 gacgtagtctttggtggtgg 268 |||||||||||||||||||| Sbjct: 424 gacgtagtctttggtggtgg 405
>ref|XM_962211.1| PREDICTED: Tribolium castaneum similar to CG10374-PA, isoform A, transcript variant 1 (LOC660518), mRNA Length = 955 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 249 gacgtagtctttggtggtgg 268 |||||||||||||||||||| Sbjct: 389 gacgtagtctttggtggtgg 370
>gb|AC160115.2| Mus musculus BAC clone RP23-473K23 from chromosome 13, complete sequence Length = 182345 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 132 cttcttcctgatctctccct 151 |||||||||||||||||||| Sbjct: 170848 cttcttcctgatctctccct 170829
>emb|CR857837.1| Pongo pygmaeus mRNA; cDNA DKFZp459O1454 (from clone DKFZp459O1454) Length = 4045 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 278 ggagcgcggagtcggagcgg 297 |||||||||||||||||||| Sbjct: 28 ggagcgcggagtcggagcgg 47
>gb|AC044786.3| Homo sapiens chromosome 10 clone RP11-56P5, complete sequence Length = 83559 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 10 aataattcactaagtaacat 29 |||||||||||||||||||| Sbjct: 13452 aataattcactaagtaacat 13433
>ref|NM_167760.1| Drosophila melanogaster CG14476-RE, transcript variant E (CG14476), mRNA Length = 3264 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 344 aggtcttaaagctcccggggtcca 367 ||||||||||| |||||||||||| Sbjct: 331 aggtcttaaagttcccggggtcca 308
>ref|NM_167759.1| Drosophila melanogaster CG14476-RD, transcript variant D (CG14476), mRNA Length = 3138 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 344 aggtcttaaagctcccggggtcca 367 ||||||||||| |||||||||||| Sbjct: 205 aggtcttaaagttcccggggtcca 182
>ref|NM_167758.1| Drosophila melanogaster CG14476-RC, transcript variant C (CG14476), mRNA Length = 3089 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 344 aggtcttaaagctcccggggtcca 367 ||||||||||| |||||||||||| Sbjct: 156 aggtcttaaagttcccggggtcca 133
>ref|NM_167757.1| Drosophila melanogaster CG14476-RA, transcript variant A (CG14476), mRNA Length = 3144 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 344 aggtcttaaagctcccggggtcca 367 ||||||||||| |||||||||||| Sbjct: 213 aggtcttaaagttcccggggtcca 190
>ref|NM_143888.4| Drosophila melanogaster CG14476-RB, transcript variant B (CG14476), mRNA Length = 3135 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 344 aggtcttaaagctcccggggtcca 367 ||||||||||| |||||||||||| Sbjct: 202 aggtcttaaagttcccggggtcca 179
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 163 agcacgccgacgtcgcccat 182 |||||||||||||||||||| Sbjct: 1783917 agcacgccgacgtcgcccat 1783936
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 231 gccggtggcgatgcgctgga 250 |||||||||||||||||||| Sbjct: 290635 gccggtggcgatgcgctgga 290616
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 160 gtgagcacgccgacgtcgcc 179 |||||||||||||||||||| Sbjct: 1373013 gtgagcacgccgacgtcgcc 1372994
>dbj|AP004674.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0681F05 Length = 144741 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 288 gtcggagcggaagaggcccctccg 311 ||||||| |||||||||||||||| Sbjct: 104245 gtcggagtggaagaggcccctccg 104222
>emb|AJ005967.1|NYV5967 faba bean necrotic yellows virus C10 gene Length = 996 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 22 agtaacattgacaataatatatca 45 ||||||||| |||||||||||||| Sbjct: 862 agtaacattaacaataatatatca 839
>dbj|AP000389.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MSJ3 Length = 55739 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 34 aataatatatcacactacag 53 |||||||||||||||||||| Sbjct: 6148 aataatatatcacactacag 6167
>emb|AJ132179.1|FBE132179 faba bean necrotic yellows virus C10-Eg gene, isolate Egyptian EV1-93 Length = 999 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 22 agtaacattgacaataatatatca 45 ||||||||| |||||||||||||| Sbjct: 862 agtaacattaacaataatatatca 839
>dbj|AK103641.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033134M02, full insert sequence Length = 1224 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 288 gtcggagcggaagaggcccctccg 311 ||||||| |||||||||||||||| Sbjct: 938 gtcggagtggaagaggcccctccg 915
>dbj|AK071111.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023078B01, full insert sequence Length = 971 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 288 gtcggagcggaagaggcccctccg 311 ||||||| |||||||||||||||| Sbjct: 685 gtcggagtggaagaggcccctccg 662
>tpe|BN000633.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx104 gene for class III peroxidase 104 precursor, exons 1-4 Length = 1853 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 288 gtcggagcggaagaggcccctccg 311 ||||||| |||||||||||||||| Sbjct: 1682 gtcggagtggaagaggcccctccg 1659
>gb|AF145625.1|AF145625 Drosophila melanogaster clone GH04962 BcDNA.GH04962 (BcDNA.GH04962) mRNA, complete cds Length = 3174 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 344 aggtcttaaagctcccggggtcca 367 ||||||||||| |||||||||||| Sbjct: 221 aggtcttaaagttcccggggtcca 198
>gb|AE003122.5| Drosophila melanogaster chromosome X, section 72 of 74 of the complete sequence Length = 306367 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 344 aggtcttaaagctcccggggtcca 367 ||||||||||| |||||||||||| Sbjct: 83521 aggtcttaaagttcccggggtcca 83544
>gb|AC116797.11| Mus musculus chromosome 13, clone RP24-327I15, complete sequence Length = 145747 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 132 cttcttcctgatctctccct 151 |||||||||||||||||||| Sbjct: 21431 cttcttcctgatctctccct 21412 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,537,832 Number of Sequences: 3902068 Number of extensions: 2537832 Number of successful extensions: 49718 Number of sequences better than 10.0: 89 Number of HSP's better than 10.0 without gapping: 86 Number of HSP's successfully gapped in prelim test: 6 Number of HSP's that attempted gapping in prelim test: 49106 Number of HSP's gapped (non-prelim): 599 length of query: 375 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 353 effective length of database: 17,147,199,772 effective search space: 6052961519516 effective search space used: 6052961519516 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
