ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbart06c07 |
|---|---|
| Clone Library Name | barley_pub |
>DFRA_DIACA (P51104) Dihydroflavonol-4-reductase (EC 1.1.1.219) (DFR)| (Dihydrokaempferol 4-reductase) Length = 360 Score = 43.5 bits (101), Expect = 2e-04 Identities = 25/66 (37%), Positives = 41/66 (62%), Gaps = 1/66 (1%) Frame = -1 Query: 416 LCRVLGKLFPEYPVPTKCKDEVNPPVKGYKFTNQRLKDLGMEFVPVLQGIY-ETVRSLQE 240 + ++L + +PEY VPTK KD + +F++++L DLG EF L+ +Y V S + Sbjct: 279 IAKMLREEYPEYNVPTKFKD-YKEDMGQVQFSSKKLTDLGFEFKYGLKDMYTAAVESCRA 337 Query: 239 KGMLPV 222 KG+LP+ Sbjct: 338 KGLLPL 343
>DFRA_VITVI (P51110) Dihydroflavonol-4-reductase (EC 1.1.1.219) (DFR)| (Dihydrokaempferol 4-reductase) Length = 337 Score = 38.1 bits (87), Expect = 0.008 Identities = 22/64 (34%), Positives = 40/64 (62%), Gaps = 1/64 (1%) Frame = -1 Query: 416 LCRVLGKLFPEYPVPTKCKDEVNPPVKGYKFTNQRLKDLGMEFVPVLQGIYE-TVRSLQE 240 L ++L + +PEY +PT+ K V+ +K F++++L DLG EF L+ ++ V + + Sbjct: 263 LAKMLREKYPEYNIPTEFKG-VDENLKSVCFSSKKLTDLGFEFKYSLEDMFTGAVDTCRA 321 Query: 239 KGML 228 KG+L Sbjct: 322 KGLL 325
>DFRA_CALCH (P51103) Dihydroflavonol-4-reductase (EC 1.1.1.219) (DFR)| (Dihydrokaempferol 4-reductase) Length = 364 Score = 38.1 bits (87), Expect = 0.008 Identities = 27/84 (32%), Positives = 49/84 (58%), Gaps = 3/84 (3%) Frame = -1 Query: 416 LCRVLGKLFPEYPVPTKCK--DEVNPPVKGYKFTNQRLKDLGMEFVPVLQGIYE-TVRSL 246 L R++ + +PEY VPT+ DE P V F++++L D+G +F L+ +++ + S Sbjct: 264 LARMIKQKWPEYHVPTQFAGIDEELPTV---SFSSKKLIDMGFKFKYDLEDMFKGAIDSC 320 Query: 245 QEKGMLPVLPPSDDVRDNMHEQLI 174 +EKG LP +++V+ + E I Sbjct: 321 KEKGFLPY--STNEVKKGLFESSI 342
>DFRA_GERHY (P51105) Dihydroflavonol-4-reductase (EC 1.1.1.219) (DFR)| (Dihydrokaempferol 4-reductase) Length = 366 Score = 36.6 bits (83), Expect = 0.024 Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 3/78 (3%) Frame = -1 Query: 416 LCRVLGKLFPEYPVPTKCK--DEVNPPVKGYKFTNQRLKDLGMEFVPVLQGIYE-TVRSL 246 L +++ +PEY +PTK DE P V F++++L D G EF L+ +++ + + Sbjct: 264 LAKIIKDKWPEYYIPTKFPGIDEELPIV---SFSSKKLIDTGFEFKYNLEDMFKGAIDTC 320 Query: 245 QEKGMLPVLPPSDDVRDN 192 +EKG+LP + + N Sbjct: 321 REKGLLPYSTIKNHINGN 338
>MY18B_HUMAN (Q8IUG5) Myosin-18B (Myosin XVIIIb)| Length = 2567 Score = 34.3 bits (77), Expect = 0.12 Identities = 18/35 (51%), Positives = 23/35 (65%) Frame = -3 Query: 351 EPTGERVQVH*PEAQGPGDGVRAGAAGYIRDGEEP 247 EP G+ Q P+AQGPG+GVR G A ++G EP Sbjct: 257 EPQGKDRQGTRPQAQGPGEGVRPGKAE--KEGAEP 289
>CLIC6_RABIT (Q9N2G5) Chloride intracellular channel 6 (Parchorin)| Length = 637 Score = 32.7 bits (73), Expect = 0.35 Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 2/58 (3%) Frame = -3 Query: 360 GRGEPTGERVQVH*PEAQG--PGDGVRAGAAGYIRDGEEPPGERDAAGATTK*RRPRQ 193 G +P E V+V E +G PG+ V AA EP G DAAG RP++ Sbjct: 264 GSPQPRSEAVEVAAAENEGHSPGESVEDAAAEEAAGTREPEGSEDAAGEDGDQGRPQE 321
>MYST1_HUMAN (Q9H7Z6) Probable histone acetyltransferase MYST1 (EC 2.3.1.48)| (MYST protein 1) (MOZ, YBF2/SAS3, SAS2 and TIP60 protein 1) (hMOF) Length = 458 Score = 29.6 bits (65), Expect = 2.9 Identities = 15/32 (46%), Positives = 17/32 (53%) Frame = -3 Query: 312 AQGPGDGVRAGAAGYIRDGEEPPGERDAAGAT 217 AQG V AG +G +GE PGE AA T Sbjct: 3 AQGAAAAVAAGTSGVAGEGEPGPGENAAAEGT 34
>CLR59_XENLA (Q5U243) Cytoplasmic linker protein 170-related 59 kDa protein| (CLIPR-59) (CLIP-170-related 59 kDa protein) Length = 534 Score = 29.3 bits (64), Expect = 3.8 Identities = 11/22 (50%), Positives = 13/22 (59%) Frame = +1 Query: 34 SMPAPLKSAYVYIYF*PNGPTC 99 S PAPL Y + +F PN P C Sbjct: 36 SAPAPLPKDYAFTFFDPNDPAC 57
>VG02_ICHV1 (Q00126) Hypothetical gene 2 protein| Length = 407 Score = 29.3 bits (64), Expect = 3.8 Identities = 21/69 (30%), Positives = 25/69 (36%) Frame = -3 Query: 411 PRPRQALPRVSRTHQVQGRGEPTGERVQVH*PEAQGPGDGVRAGAAGYIRDGEEPPGERD 232 PRP + +PR R H R P G+R P A R G + E GE Sbjct: 15 PRPVEKMPRFQREHGASHRYTPMGKR-----PAAPANTGSHRGALLGRLNGDPERKGEFT 69 Query: 231 AAGATTK*R 205 A K R Sbjct: 70 AVSKLLKSR 78
>OMGP_HUMAN (P23515) Oligodendrocyte-myelin glycoprotein precursor| Length = 440 Score = 29.3 bits (64), Expect = 3.8 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 3/46 (6%) Frame = +1 Query: 244 WRLLTVSYI---PCSTGTNSIPRSLSLWLVNLYPFTGGFTSSLHLV 372 W + T +++ PCST +S+ N+YP GFTSSL V Sbjct: 241 WMMETKAHVIGTPCSTQISSLKEH------NMYPTPSGFTSSLFTV 280
>CLR59_PONPY (Q5R686) Cytoplasmic linker protein 170-related 59 kDa protein| (CLIPR-59) (CLIP-170-related 59 kDa protein) Length = 547 Score = 29.3 bits (64), Expect = 3.8 Identities = 11/22 (50%), Positives = 13/22 (59%) Frame = +1 Query: 34 SMPAPLKSAYVYIYF*PNGPTC 99 S PAPL Y + +F PN P C Sbjct: 46 SAPAPLPKDYAFTFFDPNDPAC 67
>CLR59_HUMAN (Q96DZ5) Cytoplasmic linker protein 170-related 59 kDa protein| (CLIPR-59) (CLIP-170-related 59 kDa protein) Length = 547 Score = 29.3 bits (64), Expect = 3.8 Identities = 11/22 (50%), Positives = 13/22 (59%) Frame = +1 Query: 34 SMPAPLKSAYVYIYF*PNGPTC 99 S PAPL Y + +F PN P C Sbjct: 46 SAPAPLPKDYAFTFFDPNDPAC 67
>PURT_ECOLI (P33221) Phosphoribosylglycinamide formyltransferase 2 (EC 2.1.2.-)| (GART 2) (GAR transformylase 2) (5'-phosphoribosylglycinamide transformylase 2) (Formate-dependent GAR transformylase) Length = 391 Score = 28.9 bits (63), Expect = 5.0 Identities = 17/40 (42%), Positives = 21/40 (52%) Frame = +3 Query: 279 HRHELHPQVLEPLVSELVPFHRWVHLVLALGGYGILGEEL 398 +R PQ + PL E +VLALGGYG+ G EL Sbjct: 229 YRESWQPQQMSPLALERAQ-EIARKVVLALGGYGLFGVEL 267
>ARHG1_RAT (Q9Z1I6) Rho guanine nucleotide exchange factor 1 (Lbc's second| cousin) Length = 919 Score = 28.5 bits (62), Expect = 6.6 Identities = 13/34 (38%), Positives = 19/34 (55%) Frame = -3 Query: 315 EAQGPGDGVRAGAAGYIRDGEEPPGERDAAGATT 214 E+ PGD G +G ++ EEPPG R+ + T Sbjct: 371 ESPEPGDDGEPGRSGLEQEPEEPPGWRELVPSDT 404
>KZ_DROME (O46072) Probable ATP-dependent RNA helicase kurz (EC 3.6.1.-)| Length = 1192 Score = 28.1 bits (61), Expect = 8.6 Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 14/93 (15%) Frame = -1 Query: 416 LCRVLGKLFPEYPVPTK--------CKDEVNPPVKGYKFTNQRLKDLGMEFVPVLQGIYE 261 L R L + FP + PTK ++E + T + K+L + V++ I + Sbjct: 491 LVRKLRRTFPYHHAPTKDVAKNGKVSEEEKEETIDDAASTVEDPKELEFDMKRVIRNIRK 550 Query: 260 TVRSLQEKGMLPVLP------PSDDVRDNMHEQ 180 + + + LP + P DD +MHEQ Sbjct: 551 SKKKFLAQMALPKINLDDYKLPGDDTEADMHEQ 583
>CYB_THEPA (Q36099) Cytochrome b| Length = 363 Score = 28.1 bits (61), Expect = 8.6 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 10/61 (16%) Frame = +1 Query: 250 LLTVSYIPCSTGT-NSIPRSLSL----WLVNLYPFTG----GFTSSLHLV-GTGYSGKSL 399 LLT Y+PC G S+ R ++ W V LY G F +H++ G YS K + Sbjct: 40 LLTFFYVPCKEGAFESLSRLVTETQFGWFVRLYHSVGVSFYFFFMFIHIIKGMWYSSKYM 99 Query: 400 P 402 P Sbjct: 100 P 100 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 64,887,384 Number of Sequences: 219361 Number of extensions: 1372388 Number of successful extensions: 4368 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 4193 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4366 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2228238148 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
