ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbart06b10 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT009571.1| Triticum aestivum clone wre1n.pk0021.e3:fis, full insert mRNA sequence Length = 770 Score = 111 bits (56), Expect = 2e-21 Identities = 113/132 (85%) Strand = Plus / Minus Query: 312 cgggaaggaatggccttcctgcactgagctaggattttcacgcaatcctcatcgctccag 371 |||||||| ||||||||| |||| ||||| ||||| || | ||||||||| ||||||||| Sbjct: 289 cgggaaggtatggccttcttgcattgagcgaggatcttgatgcaatcctcgtcgctccag 230 Query: 372 aagtgtagcacaagcttgagcatcacagcctgtgatgatgggacggaatggaacaaatca 431 |||||||| |||||||||||||| || ||||| | || |||||||| |||||| | ||| Sbjct: 229 aagtgtagaacaagcttgagcatgacggcctgagctggtgggacggtatggaagaggtca 170 Query: 432 cctgcgacatag 443 || ||||||||| Sbjct: 169 ccagcgacatag 158 Score = 40.1 bits (20), Expect = 6.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 169 tgctccagtcattttcatcccgttgacgtcct 200 ||||||| || |||||||||||||| |||||| Sbjct: 429 tgctccactccttttcatcccgttgccgtcct 398
>dbj|AK106179.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-C11, full insert sequence Length = 1362 Score = 101 bits (51), Expect = 2e-18 Identities = 168/207 (81%) Strand = Plus / Minus Query: 237 tgggcttcaaacattatcggccctaaggaaggaccaaccacaatttcaatgactattatc 296 |||||||||||||||| || |||| ||||| ||||||| || || |||| || | | Sbjct: 1006 tgggcttcaaacattactggtcctagtgaaggtccaaccagtatctctatgatgatgacc 947 Query: 297 ttccctccctcctcgcgggaaggaatggccttcctgcactgagctaggattttcacgcaa 356 |||||||||||||| || || ||||||||||| |||||||||| | ||| ||||||||| Sbjct: 946 ttccctccctcctctcgtgatggaatggcctttctgcactgagtcaagatcttcacgcaa 887 Query: 357 tcctcatcgctccagaagtgtagcacaagcttgagcatcacagcctgtgatgatgggacg 416 || |||||||||||| ||| | ||||||||||||||||| || || | | ||| ||| Sbjct: 886 tcatcatcgctccagtggtgcaatacaagcttgagcatcacggcttgagccggtggcacg 827 Query: 417 gaatggaacaaatcacctgcgacatag 443 | |||||||| |||||||| |||||| Sbjct: 826 gtgtggaacaagtcacctgcaacatag 800
>dbj|AK059770.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-H05, full insert sequence Length = 1264 Score = 101 bits (51), Expect = 2e-18 Identities = 168/207 (81%) Strand = Plus / Minus Query: 237 tgggcttcaaacattatcggccctaaggaaggaccaaccacaatttcaatgactattatc 296 |||||||||||||||| || |||| ||||| ||||||| || || |||| || | | Sbjct: 1011 tgggcttcaaacattactggtcctagtgaaggtccaaccagtatctctatgatgatgacc 952 Query: 297 ttccctccctcctcgcgggaaggaatggccttcctgcactgagctaggattttcacgcaa 356 |||||||||||||| || || ||||||||||| |||||||||| | ||| ||||||||| Sbjct: 951 ttccctccctcctctcgtgatggaatggcctttctgcactgagtcaagatcttcacgcaa 892 Query: 357 tcctcatcgctccagaagtgtagcacaagcttgagcatcacagcctgtgatgatgggacg 416 || |||||||||||| ||| | ||||||||||||||||| || || | | ||| ||| Sbjct: 891 tcatcatcgctccagtggtgcaatacaagcttgagcatcacggcttgagccggtggcacg 832 Query: 417 gaatggaacaaatcacctgcgacatag 443 | |||||||| |||||||| |||||| Sbjct: 831 gtgtggaacaagtcacctgcaacatag 805
>gb|AC138195.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0005P21, complete sequence Length = 147381 Score = 87.7 bits (44), Expect = 3e-14 Identities = 155/192 (80%) Strand = Plus / Minus Query: 177 tcattttcatcccgttgacgtccttttgagttcaccatcatgagcatgtccataaggagt 236 |||||||| | ||||||||| ||| | | ||||||||||||||||||||||| | ||| Sbjct: 64387 tcattttcgttccgttgacgacctctagtattcaccatcatgagcatgtccatcatgagc 64328 Query: 237 tgggcttcaaacattatcggccctaaggaaggaccaaccacaatttcaatgactattatc 296 || ||||| ||||||| ||||| || || || |||||| || || ||||| || | | Sbjct: 64327 tgcgcttcgaacattacaggccccaaagatggttcaaccaagatatctatgacaatcaac 64268 Query: 297 ttccctccctcctcgcgggaaggaatggccttcctgcactgagctaggattttcacgcaa 356 ||||| ||||||| || |||||||| ||||| |||||||||||||||| |||||||| Sbjct: 64267 ttcccgccctcctttcgtgaaggaatagcctttttgcactgagctaggatcttcacgcag 64208 Query: 357 tcctcatcgctc 368 || || |||||| Sbjct: 64207 tcatcgtcgctc 64196 Score = 85.7 bits (43), Expect = 1e-13 Identities = 112/135 (82%) Strand = Plus / Minus Query: 237 tgggcttcaaacattatcggccctaaggaaggaccaaccacaatttcaatgactattatc 296 |||||||||||||||| || |||| ||||| ||||||| || || |||| || | | Sbjct: 123013 tgggcttcaaacattactggtcctagtgaaggtccaaccagtatctctatgatgatgacc 122954 Query: 297 ttccctccctcctcgcgggaaggaatggccttcctgcactgagctaggattttcacgcaa 356 |||||||||||||| || || ||||||||||| |||||||||| | ||| ||||||||| Sbjct: 122953 ttccctccctcctctcgtgatggaatggcctttctgcactgagtcaagatcttcacgcaa 122894 Query: 357 tcctcatcgctccag 371 || |||||||||||| Sbjct: 122893 tcatcatcgctccag 122879 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Plus Query: 93 tagacctcaatgatgcatcgagctcctagtttcttcacaattttgtagtc 142 ||||||||||||| ||||||||||||||||| |||| || |||||||| Sbjct: 128284 tagacctcaatgacacatcgagctcctagtttgttcatgatcttgtagtc 128333 Score = 50.1 bits (25), Expect = 0.006 Identities = 49/57 (85%) Strand = Plus / Plus Query: 315 gaaggaatggccttcctgcactgagctaggattttcacgcaatcctcatcgctccag 371 ||||||||||| ||| |||| || || ||||||||||| || || |||||||||||| Sbjct: 128503 gaaggaatggctttcttgcattgtgcaaggattttcacacagtcgtcatcgctccag 128559
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 87.7 bits (44), Expect = 3e-14 Identities = 155/192 (80%) Strand = Plus / Plus Query: 177 tcattttcatcccgttgacgtccttttgagttcaccatcatgagcatgtccataaggagt 236 |||||||| | ||||||||| ||| | | ||||||||||||||||||||||| | ||| Sbjct: 11549401 tcattttcgttccgttgacgacctctagtattcaccatcatgagcatgtccatcatgagc 11549460 Query: 237 tgggcttcaaacattatcggccctaaggaaggaccaaccacaatttcaatgactattatc 296 || ||||| ||||||| ||||| || || || |||||| || || ||||| || | | Sbjct: 11549461 tgcgcttcgaacattacaggccccaaagatggttcaaccaagatatctatgacaatcaac 11549520 Query: 297 ttccctccctcctcgcgggaaggaatggccttcctgcactgagctaggattttcacgcaa 356 ||||| ||||||| || |||||||| ||||| |||||||||||||||| |||||||| Sbjct: 11549521 ttcccgccctcctttcgtgaaggaatagcctttttgcactgagctaggatcttcacgcag 11549580 Query: 357 tcctcatcgctc 368 || || |||||| Sbjct: 11549581 tcatcgtcgctc 11549592 Score = 85.7 bits (43), Expect = 1e-13 Identities = 112/135 (82%) Strand = Plus / Plus Query: 237 tgggcttcaaacattatcggccctaaggaaggaccaaccacaatttcaatgactattatc 296 |||||||||||||||| || |||| ||||| ||||||| || || |||| || | | Sbjct: 11490775 tgggcttcaaacattactggtcctagtgaaggtccaaccagtatctctatgatgatgacc 11490834 Query: 297 ttccctccctcctcgcgggaaggaatggccttcctgcactgagctaggattttcacgcaa 356 |||||||||||||| || || ||||||||||| |||||||||| | ||| ||||||||| Sbjct: 11490835 ttccctccctcctctcgtgatggaatggcctttctgcactgagtcaagatcttcacgcaa 11490894 Query: 357 tcctcatcgctccag 371 || |||||||||||| Sbjct: 11490895 tcatcatcgctccag 11490909 Score = 63.9 bits (32), Expect = 4e-07 Identities = 50/56 (89%) Strand = Plus / Plus Query: 87 tatggatagacctcaatgatgcatcgagctcctagtttcttcacaattttgtagtc 142 ||||| |||||||||| || || ||||||||| |||||||||||||| |||||||| Sbjct: 11353886 tatgggtagacctcaaagacgcctcgagctcccagtttcttcacaatattgtagtc 11353941 Score = 58.0 bits (29), Expect = 3e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 87 tatggatagacctcaatgatgcatcgagctcctagtttcttcacaattttgta 139 |||||||||||||||| ||||| |||| |||||| ||||||||||| ||||| Sbjct: 11437238 tatggatagacctcaaagatgcctcgaattcctagcttcttcacaatcttgta 11437290 Score = 56.0 bits (28), Expect = 1e-04 Identities = 76/92 (82%) Strand = Plus / Plus Query: 296 cttccctccctcctcgcgggaaggaatggccttcctgcactgagctaggattttcacgca 355 |||||||||||||| || ||||| ||||| ||| ||||||| | ||||| |||||||| Sbjct: 7137735 cttccctccctcctttcgtgaagggatggctttcttgcactgggacaggatcttcacgca 7137794 Query: 356 atcctcatcgctccagaagtgtagcacaagct 387 || ||||||||||| || || || ||||||| Sbjct: 7137795 gtcgtcatcgctccaaaaatgcagtacaagct 7137826 Score = 54.0 bits (27), Expect = 4e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 318 ggaatggccttcctgcactgagctaggattttcacgcaatcct 360 ||||| || ||| |||| ||||||||||||||||||||||||| Sbjct: 11437466 ggaatagctttcttgcaatgagctaggattttcacgcaatcct 11437508 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Minus Query: 93 tagacctcaatgatgcatcgagctcctagtttcttcacaattttgtagtc 142 ||||||||||||| ||||||||||||||||| |||| || |||||||| Sbjct: 11485504 tagacctcaatgacacatcgagctcctagtttgttcatgatcttgtagtc 11485455 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Plus Query: 90 ggatagacctcaatgatgcatcgagctcctagtttcttcacaattttgtagtcc 143 |||||||||||||||| || |||| ||| | |||||||||||| ||||||||| Sbjct: 11294531 ggatagacctcaatgacacaccgaggtcccaatttcttcacaatcttgtagtcc 11294584 Score = 50.1 bits (25), Expect = 0.006 Identities = 49/57 (85%) Strand = Plus / Minus Query: 315 gaaggaatggccttcctgcactgagctaggattttcacgcaatcctcatcgctccag 371 ||||||||||| ||| |||| || || ||||||||||| || || |||||||||||| Sbjct: 11485285 gaaggaatggctttcttgcattgtgcaaggattttcacacagtcgtcatcgctccag 11485229 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 tccataaggagttgggcttc 244 |||||||||||||||||||| Sbjct: 11329733 tccataaggagttgggcttc 11329752
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 87.7 bits (44), Expect = 3e-14 Identities = 155/192 (80%) Strand = Plus / Plus Query: 177 tcattttcatcccgttgacgtccttttgagttcaccatcatgagcatgtccataaggagt 236 |||||||| | ||||||||| ||| | | ||||||||||||||||||||||| | ||| Sbjct: 11628590 tcattttcgttccgttgacgacctctagtattcaccatcatgagcatgtccatcatgagc 11628649 Query: 237 tgggcttcaaacattatcggccctaaggaaggaccaaccacaatttcaatgactattatc 296 || ||||| ||||||| ||||| || || || |||||| || || ||||| || | | Sbjct: 11628650 tgcgcttcgaacattacaggccccaaagatggttcaaccaagatatctatgacaatcaac 11628709 Query: 297 ttccctccctcctcgcgggaaggaatggccttcctgcactgagctaggattttcacgcaa 356 ||||| ||||||| || |||||||| ||||| |||||||||||||||| |||||||| Sbjct: 11628710 ttcccgccctcctttcgtgaaggaatagcctttttgcactgagctaggatcttcacgcag 11628769 Query: 357 tcctcatcgctc 368 || || |||||| Sbjct: 11628770 tcatcgtcgctc 11628781 Score = 85.7 bits (43), Expect = 1e-13 Identities = 112/135 (82%) Strand = Plus / Plus Query: 237 tgggcttcaaacattatcggccctaaggaaggaccaaccacaatttcaatgactattatc 296 |||||||||||||||| || |||| ||||| ||||||| || || |||| || | | Sbjct: 11569964 tgggcttcaaacattactggtcctagtgaaggtccaaccagtatctctatgatgatgacc 11570023 Query: 297 ttccctccctcctcgcgggaaggaatggccttcctgcactgagctaggattttcacgcaa 356 |||||||||||||| || || ||||||||||| |||||||||| | ||| ||||||||| Sbjct: 11570024 ttccctccctcctctcgtgatggaatggcctttctgcactgagtcaagatcttcacgcaa 11570083 Query: 357 tcctcatcgctccag 371 || |||||||||||| Sbjct: 11570084 tcatcatcgctccag 11570098 Score = 63.9 bits (32), Expect = 4e-07 Identities = 50/56 (89%) Strand = Plus / Plus Query: 87 tatggatagacctcaatgatgcatcgagctcctagtttcttcacaattttgtagtc 142 ||||| |||||||||| || || ||||||||| |||||||||||||| |||||||| Sbjct: 11433075 tatgggtagacctcaaagacgcctcgagctcccagtttcttcacaatattgtagtc 11433130 Score = 58.0 bits (29), Expect = 3e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 87 tatggatagacctcaatgatgcatcgagctcctagtttcttcacaattttgta 139 |||||||||||||||| ||||| |||| |||||| ||||||||||| ||||| Sbjct: 11516427 tatggatagacctcaaagatgcctcgaattcctagcttcttcacaatcttgta 11516479 Score = 56.0 bits (28), Expect = 1e-04 Identities = 76/92 (82%) Strand = Plus / Plus Query: 296 cttccctccctcctcgcgggaaggaatggccttcctgcactgagctaggattttcacgca 355 |||||||||||||| || ||||| ||||| ||| ||||||| | ||||| |||||||| Sbjct: 7203706 cttccctccctcctttcgtgaagggatggctttcttgcactgggacaggatcttcacgca 7203765 Query: 356 atcctcatcgctccagaagtgtagcacaagct 387 || ||||||||||| || || || ||||||| Sbjct: 7203766 gtcgtcatcgctccaaaaatgcagtacaagct 7203797 Score = 54.0 bits (27), Expect = 4e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 318 ggaatggccttcctgcactgagctaggattttcacgcaatcct 360 ||||| || ||| |||| ||||||||||||||||||||||||| Sbjct: 11516655 ggaatagctttcttgcaatgagctaggattttcacgcaatcct 11516697 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Minus Query: 93 tagacctcaatgatgcatcgagctcctagtttcttcacaattttgtagtc 142 ||||||||||||| ||||||||||||||||| |||| || |||||||| Sbjct: 11564693 tagacctcaatgacacatcgagctcctagtttgttcatgatcttgtagtc 11564644 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Plus Query: 90 ggatagacctcaatgatgcatcgagctcctagtttcttcacaattttgtagtcc 143 |||||||||||||||| || |||| ||| | |||||||||||| ||||||||| Sbjct: 11373720 ggatagacctcaatgacacaccgaggtcccaatttcttcacaatcttgtagtcc 11373773 Score = 50.1 bits (25), Expect = 0.006 Identities = 49/57 (85%) Strand = Plus / Minus Query: 315 gaaggaatggccttcctgcactgagctaggattttcacgcaatcctcatcgctccag 371 ||||||||||| ||| |||| || || ||||||||||| || || |||||||||||| Sbjct: 11564474 gaaggaatggctttcttgcattgtgcaaggattttcacacagtcgtcatcgctccag 11564418 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 tccataaggagttgggcttc 244 |||||||||||||||||||| Sbjct: 11408922 tccataaggagttgggcttc 11408941
>gb|AC135793.4| Oryza sativa chromosome 11 BAC clone OSJNBb0017P15, complete sequence Length = 128418 Score = 85.7 bits (43), Expect = 1e-13 Identities = 112/135 (82%) Strand = Plus / Minus Query: 237 tgggcttcaaacattatcggccctaaggaaggaccaaccacaatttcaatgactattatc 296 |||||||||||||||| || |||| ||||| ||||||| || || |||| || | | Sbjct: 8762 tgggcttcaaacattactggtcctagtgaaggtccaaccagtatctctatgatgatgacc 8703 Query: 297 ttccctccctcctcgcgggaaggaatggccttcctgcactgagctaggattttcacgcaa 356 |||||||||||||| || || ||||||||||| |||||||||| | ||| ||||||||| Sbjct: 8702 ttccctccctcctctcgtgatggaatggcctttctgcactgagtcaagatcttcacgcaa 8643 Query: 357 tcctcatcgctccag 371 || |||||||||||| Sbjct: 8642 tcatcatcgctccag 8628 Score = 58.0 bits (29), Expect = 3e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 87 tatggatagacctcaatgatgcatcgagctcctagtttcttcacaattttgta 139 |||||||||||||||| ||||| |||| |||||| ||||||||||| ||||| Sbjct: 62299 tatggatagacctcaaagatgcctcgaattcctagcttcttcacaatcttgta 62247 Score = 54.0 bits (27), Expect = 4e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 318 ggaatggccttcctgcactgagctaggattttcacgcaatcct 360 ||||| || ||| |||| ||||||||||||||||||||||||| Sbjct: 62071 ggaatagctttcttgcaatgagctaggattttcacgcaatcct 62029 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Plus Query: 93 tagacctcaatgatgcatcgagctcctagtttcttcacaattttgtagtc 142 ||||||||||||| ||||||||||||||||| |||| || |||||||| Sbjct: 14033 tagacctcaatgacacatcgagctcctagtttgttcatgatcttgtagtc 14082 Score = 50.1 bits (25), Expect = 0.006 Identities = 49/57 (85%) Strand = Plus / Plus Query: 315 gaaggaatggccttcctgcactgagctaggattttcacgcaatcctcatcgctccag 371 ||||||||||| ||| |||| || || ||||||||||| || || |||||||||||| Sbjct: 14252 gaaggaatggctttcttgcattgtgcaaggattttcacacagtcgtcatcgctccag 14308
>gb|AY107519.1| Zea mays PCO078033 mRNA sequence Length = 1299 Score = 79.8 bits (40), Expect = 7e-12 Identities = 91/108 (84%) Strand = Plus / Minus Query: 296 cttccctccctcctcgcgggaaggaatggccttcctgcactgagctaggattttcacgca 355 ||||||||| || | ||||||||| ||||||||||||||| | | ||||| || ||||| Sbjct: 899 cttccctccttcttggcgggaagggatggccttcctgcacagctccaggatcttgacgca 840 Query: 356 atcctcatcgctccagaagtgtagcacaagcttgagcatcacagcctg 403 || || |||||||||||||| || || ||||||||||| |||||||| Sbjct: 839 gtcgtcgtcgctccagaagtgcaggacgagcttgagcatgacagcctg 792 Score = 48.1 bits (24), Expect = 0.025 Identities = 24/24 (100%) Strand = Plus / Minus Query: 206 gttcaccatcatgagcatgtccat 229 |||||||||||||||||||||||| Sbjct: 989 gttcaccatcatgagcatgtccat 966
>gb|AC112208.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0015P05 map C53961S, complete sequence Length = 175121 Score = 63.9 bits (32), Expect = 4e-07 Identities = 50/56 (89%) Strand = Plus / Plus Query: 87 tatggatagacctcaatgatgcatcgagctcctagtttcttcacaattttgtagtc 142 ||||| |||||||||| || || ||||||||| |||||||||||||| |||||||| Sbjct: 140244 tatgggtagacctcaaagacgcctcgagctcccagtttcttcacaatattgtagtc 140299 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Plus Query: 90 ggatagacctcaatgatgcatcgagctcctagtttcttcacaattttgtagtcc 143 |||||||||||||||| || |||| ||| | |||||||||||| ||||||||| Sbjct: 80889 ggatagacctcaatgacacaccgaggtcccaatttcttcacaatcttgtagtcc 80942 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 tccataaggagttgggcttc 244 |||||||||||||||||||| Sbjct: 116091 tccataaggagttgggcttc 116110
>dbj|AK061247.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-E05, full insert sequence Length = 1262 Score = 58.0 bits (29), Expect = 3e-05 Identities = 56/65 (86%) Strand = Plus / Minus Query: 336 tgagctaggattttcacgcaatcctcatcgctccagaagtgtagcacaagcttgagcatc 395 |||| ||| |||||||| |||||||| || |||||| ||| ||||||||||||||||| Sbjct: 924 tgagttagtattttcacacaatcctcgtcactccagtggtgaagcacaagcttgagcatg 865 Query: 396 acagc 400 ||||| Sbjct: 864 acagc 860 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 225 tccataaggagttgggcttc 244 |||||||||||||||||||| Sbjct: 1032 tccataaggagttgggcttc 1013
>gb|AC135258.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0097K08 map C827S, complete sequence Length = 137870 Score = 56.0 bits (28), Expect = 1e-04 Identities = 76/92 (82%) Strand = Plus / Minus Query: 296 cttccctccctcctcgcgggaaggaatggccttcctgcactgagctaggattttcacgca 355 |||||||||||||| || ||||| ||||| ||| ||||||| | ||||| |||||||| Sbjct: 44820 cttccctccctcctttcgtgaagggatggctttcttgcactgggacaggatcttcacgca 44761 Query: 356 atcctcatcgctccagaagtgtagcacaagct 387 || ||||||||||| || || || ||||||| Sbjct: 44760 gtcgtcatcgctccaaaaatgcagtacaagct 44729
>gb|AC147811.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0026P08 map near C827S, complete sequence Length = 148676 Score = 56.0 bits (28), Expect = 1e-04 Identities = 76/92 (82%) Strand = Plus / Plus Query: 296 cttccctccctcctcgcgggaaggaatggccttcctgcactgagctaggattttcacgca 355 |||||||||||||| || ||||| ||||| ||| ||||||| | ||||| |||||||| Sbjct: 50955 cttccctccctcctttcgtgaagggatggctttcttgcactgggacaggatcttcacgca 51014 Query: 356 atcctcatcgctccagaagtgtagcacaagct 387 || ||||||||||| || || || ||||||| Sbjct: 51015 gtcgtcatcgctccaaaaatgcagtacaagct 51046
>dbj|AK109384.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-A06, full insert sequence Length = 1300 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Minus Query: 93 tagacctcaatgatgcatcgagctcctagtttcttcacaattttgtagtc 142 ||||||||||||| ||||||||||||||||| |||| || |||||||| Sbjct: 1184 tagacctcaatgacacatcgagctcctagtttgttcatgatcttgtagtc 1135 Score = 50.1 bits (25), Expect = 0.006 Identities = 49/57 (85%) Strand = Plus / Minus Query: 315 gaaggaatggccttcctgcactgagctaggattttcacgcaatcctcatcgctccag 371 ||||||||||| ||| |||| || || ||||||||||| || || |||||||||||| Sbjct: 965 gaaggaatggctttcttgcattgtgcaaggattttcacacagtcgtcatcgctccag 909
>gb|AY177404.1| Secale cereale O-methyltransferase mRNA, complete cds Length = 1373 Score = 44.1 bits (22), Expect = 0.38 Identities = 25/26 (96%) Strand = Plus / Minus Query: 300 cctccctcctcgcgggaaggaatggc 325 |||||||||||||| ||||||||||| Sbjct: 925 cctccctcctcgcgtgaaggaatggc 900
>gb|AC091564.12| Homo sapiens chromosome 11, clone RP11-732A19, complete sequence Length = 211735 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 288 actattatcttccctccctcc 308 ||||||||||||||||||||| Sbjct: 42947 actattatcttccctccctcc 42927
>gb|AC124172.4| Mus musculus BAC clone RP23-168P24 from chromosome 1, complete sequence Length = 192946 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 290 tattatcttccctccctcctc 310 ||||||||||||||||||||| Sbjct: 162642 tattatcttccctccctcctc 162622
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 115 ctcctagtttcttcacaattt 135 ||||||||||||||||||||| Sbjct: 5379283 ctcctagtttcttcacaattt 5379303
>gb|AC009796.6|AC009796 Homo sapiens chromosome 11, clone RP11-211E17, complete sequence Length = 192239 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 288 actattatcttccctccctcc 308 ||||||||||||||||||||| Sbjct: 189285 actattatcttccctccctcc 189265
>emb|AL845348.4|CNS08CBA Oryza sativa chromosome 12, . BAC OSJNBb0070A23 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 105645 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 115 ctcctagtttcttcacaattt 135 ||||||||||||||||||||| Sbjct: 51350 ctcctagtttcttcacaattt 51370
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 115 ctcctagtttcttcacaattt 135 ||||||||||||||||||||| Sbjct: 5379272 ctcctagtttcttcacaattt 5379292
>emb|BX664711.2|CNS09SC1 Oryza sativa chromosome 12, . BAC B1001E08 of chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 141841 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 115 ctcctagtttcttcacaattt 135 ||||||||||||||||||||| Sbjct: 86525 ctcctagtttcttcacaattt 86505
>emb|CT025158.5| Mouse DNA sequence from clone RP23-178N11 on chromosome 16, complete sequence Length = 194555 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 320 aatggccttcctgcactgagctag 343 |||||||||||||| ||||||||| Sbjct: 130820 aatggccttcctgctctgagctag 130797
>gb|AC118755.7| Homo sapiens chromosome 17, clone RP11-55L4, complete sequence Length = 188765 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 330 ctgcactgagctaggatttt 349 |||||||||||||||||||| Sbjct: 95832 ctgcactgagctaggatttt 95813
>gb|AC084274.14| Mus musculus strain 129S6/SvEvTac clone rp22-445a10 map 16, complete sequence Length = 156624 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 320 aatggccttcctgcactgagctag 343 |||||||||||||| ||||||||| Sbjct: 154428 aatggccttcctgctctgagctag 154405
>emb|AL009028.1|HS164L12 Human DNA sequence from clone RP1-164L12 on chromosome Xq13.1-21.2 Contains the 5' end of the ITM2A gene for integral membrane protein 2A, complete sequence Length = 135090 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 116 tcctagtttcttcacaattt 135 |||||||||||||||||||| Sbjct: 7170 tcctagtttcttcacaattt 7151
>gb|AC079842.19| Homo sapiens 12q BAC RP11-989K8 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 133000 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 73 ataccacaatatcttatgga 92 |||||||||||||||||||| Sbjct: 96697 ataccacaatatcttatgga 96678
>gb|AC004667.3| Arabidopsis thaliana chromosome 2 clone T4C15 map ve016, complete sequence Length = 91863 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 78 acaatatcttatggatagacctca 101 ||||||||||||||| |||||||| Sbjct: 71661 acaatatcttatggaaagacctca 71684
>gb|AC010655.7| Homo sapiens chromosome 7 clone RP11-155G14, complete sequence Length = 165090 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 153 gctttaatgaatagtttgct 172 |||||||||||||||||||| Sbjct: 85223 gctttaatgaatagtttgct 85204
>tpg|BK004072.1| TPA: TPA_exp: Arabidopsis thaliana NAPP (NAPP) gene, complete cds Length = 8133 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 78 acaatatcttatggatagacctca 101 ||||||||||||||| |||||||| Sbjct: 6038 acaatatcttatggaaagacctca 6061
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 351 acgcaatcctcatcgctcca 370 |||||||||||||||||||| Sbjct: 22270877 acgcaatcctcatcgctcca 22270896
>gb|AC146031.4| Pan troglodytes BAC clone RP43-124G6 from chromosome 7, complete sequence Length = 172449 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 153 gctttaatgaatagtttgct 172 |||||||||||||||||||| Sbjct: 17191 gctttaatgaatagtttgct 17210
>gb|AC087501.16| Homo sapiens chromosome 17, clone RP11-565F19, complete sequence Length = 192197 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 330 ctgcactgagctaggatttt 349 |||||||||||||||||||| Sbjct: 69951 ctgcactgagctaggatttt 69932
>dbj|BA000001.2| Pyrococcus horikoshii OT3 DNA, complete genome Length = 1738505 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 282 tcaatgactattatcttccctccc 305 ||||||||||||||||| |||||| Sbjct: 1220553 tcaatgactattatcttgcctccc 1220576
>dbj|AP004662.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0048G02 Length = 155542 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 351 acgcaatcctcatcgctcca 370 |||||||||||||||||||| Sbjct: 87253 acgcaatcctcatcgctcca 87272 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,711,043 Number of Sequences: 3902068 Number of extensions: 3711043 Number of successful extensions: 71912 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 36 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 71657 Number of HSP's gapped (non-prelim): 246 length of query: 444 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 422 effective length of database: 17,147,199,772 effective search space: 7236118303784 effective search space used: 7236118303784 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
