ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart06b09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SPIKE_CVHNL (Q6Q1S2) Spike glycoprotein precursor (Peplomer prot... 29 3.0
2SYD_NITWN (Q3SS92) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspar... 28 5.2
3SYD_RHOPA (Q6N5D6) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspar... 28 5.2

>SPIKE_CVHNL (Q6Q1S2) Spike glycoprotein precursor (Peplomer protein) (E2)|
          Length = 1356

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
 Frame = -3

Query: 155  WSWWWWRIHLLVYG*LVASLE----SKPCVGWCTCL 60
            W WW W I  +V+  L++ L     S  C G C CL
Sbjct: 1295 WPWWVWLIISVVFVVLLSLLVFCCLSTGCCGCCNCL 1330



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>SYD_NITWN (Q3SS92) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA|
           ligase) (AspRS)
          Length = 590

 Score = 28.5 bits (62), Expect = 5.2
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 160 VPGPGGGGESIC*CMASW 107
           +PGPGGG  + C  M SW
Sbjct: 328 IPGPGGGSRAFCDRMNSW 345



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>SYD_RHOPA (Q6N5D6) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA|
           ligase) (AspRS)
          Length = 591

 Score = 28.5 bits (62), Expect = 5.2
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 160 VPGPGGGGESIC*CMASW 107
           +PGPGGG  + C  M SW
Sbjct: 328 IPGPGGGSRAFCDRMNSW 345


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,434,504
Number of Sequences: 219361
Number of extensions: 502081
Number of successful extensions: 1785
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1783
length of database: 80,573,946
effective HSP length: 34
effective length of database: 73,115,672
effective search space used: 1754776128
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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