Clone Name | rbart06b09 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | SPIKE_CVHNL (Q6Q1S2) Spike glycoprotein precursor (Peplomer prot... | 29 | 3.0 | 2 | SYD_NITWN (Q3SS92) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspar... | 28 | 5.2 | 3 | SYD_RHOPA (Q6N5D6) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspar... | 28 | 5.2 |
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>SPIKE_CVHNL (Q6Q1S2) Spike glycoprotein precursor (Peplomer protein) (E2)| Length = 1356 Score = 29.3 bits (64), Expect = 3.0 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 4/36 (11%) Frame = -3 Query: 155 WSWWWWRIHLLVYG*LVASLE----SKPCVGWCTCL 60 W WW W I +V+ L++ L S C G C CL Sbjct: 1295 WPWWVWLIISVVFVVLLSLLVFCCLSTGCCGCCNCL 1330
>SYD_NITWN (Q3SS92) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 590 Score = 28.5 bits (62), Expect = 5.2 Identities = 10/18 (55%), Positives = 12/18 (66%) Frame = -1 Query: 160 VPGPGGGGESIC*CMASW 107 +PGPGGG + C M SW Sbjct: 328 IPGPGGGSRAFCDRMNSW 345
>SYD_RHOPA (Q6N5D6) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 591 Score = 28.5 bits (62), Expect = 5.2 Identities = 10/18 (55%), Positives = 12/18 (66%) Frame = -1 Query: 160 VPGPGGGGESIC*CMASW 107 +PGPGGG + C M SW Sbjct: 328 IPGPGGGSRAFCDRMNSW 345 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 29,434,504 Number of Sequences: 219361 Number of extensions: 502081 Number of successful extensions: 1785 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 1606 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1783 length of database: 80,573,946 effective HSP length: 34 effective length of database: 73,115,672 effective search space used: 1754776128 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)