ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart06b06 |
|---|---|
| Clone Library Name | barley_pub |
>GALT6_MOUSE (Q8C7U7) Polypeptide N-acetylgalactosaminyltransferase 6 (EC| 2.4.1.41) (Protein-UDP acetylgalactosaminyltransferase 6) (UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 6) (Polypeptide GalNAc transferase 6) (GalNAc-T6) (pp-GaNTase 6) Length = 622 Score = 35.0 bits (79), Expect = 0.093 Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 1/76 (1%) Frame = -3 Query: 379 NEGSQQYKPSSESQPLRGDGSQQPATHSSGNTLRRRPRQF-GGNIHTLNSEEQDSSDNRN 203 N G QY + + LR + +Q H+SG+TL R QF G N EE + + ++ Sbjct: 529 NLGGNQYFEYTSQRDLRHNIGKQLCLHASGSTLGLRSCQFVGKNSRVPKDEEWELTQDQL 588 Query: 202 VFWNGNSTELGGDEKK 155 + +G+ T L +KK Sbjct: 589 IRNSGSGTCLTSQDKK 604
>STB1_YEAST (P42845) Protein STB1 (SIN3-binding protein 1)| Length = 420 Score = 33.5 bits (75), Expect = 0.27 Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 3/86 (3%) Frame = -3 Query: 448 LSYVNPLSYL-RGNPTPSNLDQLGNEGSQQYKPSSESQPLRGDGSQQP--ATHSSGNTLR 278 ++ ++P+ ++ + N PS+ + + SQQ KP E P S P H+S + R Sbjct: 85 MTVISPVKFVEKPNTPPSSRQRKAEDRSQQIKPRKEDTPSTPRASATPIILPHASSHYQR 144 Query: 277 RRPRQFGGNIHTLNSEEQDSSDNRNV 200 + F N+ S++N N+ Sbjct: 145 PHDKNFMTPKRNNNNSSNHSNNNNNI 170
>PK2_DICDI (P28178) Protein kinase 2 (EC 2.7.11.1)| Length = 479 Score = 33.1 bits (74), Expect = 0.36 Identities = 25/96 (26%), Positives = 37/96 (38%), Gaps = 12/96 (12%) Frame = -3 Query: 409 PTPSNLDQLGNEGSQQY-----------KPSSESQPLRGDGSQQPATHSSGNTLRRRPRQ 263 PT NLD + QQ K + Q + +Q P T + T+ + Sbjct: 43 PTQQNLDNSAQQQQQQQQTATAAVSLDNKEQQQQQNIPAPATQTPITQTGTPTIEESQKN 102 Query: 262 F-GGNIHTLNSEEQDSSDNRNVFWNGNSTELGGDEK 158 NI+ ++E S D+ N NGN E G E+ Sbjct: 103 TDNNNINGASNEASSSPDSPNGSGNGNDDEDEGPEE 138
>IF2_LISMF (Q71ZZ7) Translation initiation factor IF-2| Length = 782 Score = 32.7 bits (73), Expect = 0.46 Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 6/92 (6%) Frame = -3 Query: 415 GNPTPSNLDQLGNEGSQQYKPSSES----QPLRGDGSQ--QPATHSSGNTLRRRPRQFGG 254 GN N + N + KP++ + +P + SQ +PAT+ NT ++ Q G Sbjct: 70 GNSKGPNKPNMTNSNEKSNKPNNPAGQANKPATANKSQGAKPATNKPANTSKQT--QSSG 127 Query: 253 NIHTLNSEEQDSSDNRNVFWNGNSTELGGDEK 158 N +++++++N N GN GG+ + Sbjct: 128 NQQQAGGQKRNNNNNSNRPGGGNPNRPGGNNR 159
>RNQ1_YEAST (P25367) [PIN+] prion protein RNQ1 (Rich in asparagine and| glutamine protein 1) Length = 405 Score = 32.3 bits (72), Expect = 0.61 Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 4/69 (5%) Frame = -3 Query: 427 SYLRGNPTPSN---LDQLGNEGSQQYKPSSESQPLRGDGSQQPATHSSG-NTLRRRPRQF 260 SYL G T SN +Q G QQY+ ++ + G QQ HSS + L + Sbjct: 276 SYLGGGQTQSNQQQYNQQGQNNQQQYQQQGQNYQHQQQGQQQQQGHSSSFSALASMASSY 335 Query: 259 GGNIHTLNS 233 GN NS Sbjct: 336 LGNNSNSNS 344
>UBXD2_HUMAN (Q92575) UBX domain-containing protein 2| Length = 508 Score = 31.6 bits (70), Expect = 1.0 Identities = 21/84 (25%), Positives = 40/84 (47%) Frame = -3 Query: 427 SYLRGNPTPSNLDQLGNEGSQQYKPSSESQPLRGDGSQQPATHSSGNTLRRRPRQFGGNI 248 ++L NP P+ + S+ P+S S+ + + ++ G+ ++ G I Sbjct: 431 NFLFSNPPPTQTS-VRVTSSEPPNPASSSKSEKREPVRKRVLEKRGDDFKKE-----GKI 484 Query: 247 HTLNSEEQDSSDNRNVFWNGNSTE 176 + L + QD ++ N WNGNST+ Sbjct: 485 YRLRT--QDDGEDENNTWNGNSTQ 506
>BNI1_YEAST (P41832) Protein BNI1 (Synthetic lethal 39)| Length = 1953 Score = 31.2 bits (69), Expect = 1.3 Identities = 20/72 (27%), Positives = 30/72 (41%) Frame = -3 Query: 379 NEGSQQYKPSSESQPLRGDGSQQPATHSSGNTLRRRPRQFGGNIHTLNSEEQDSSDNRNV 200 N GS Y + P+ + S PA+ SS L R LN + ++ N + Sbjct: 39 NTGSPTYASQQQHSPVGNEVSTSPASSSSFRKLNAPSRSTSTEARPLNKKSTLNTQNLSQ 98 Query: 199 FWNGNSTELGGD 164 + NG +L GD Sbjct: 99 YMNG---KLSGD 107
>PRIA_LENED (Q01200) Protein priA precursor| Length = 258 Score = 30.8 bits (68), Expect = 1.8 Identities = 30/105 (28%), Positives = 38/105 (36%) Frame = +3 Query: 72 KHCCSTPQLFPTYLFPNIFNSNSPVTPYFFSSPPNSVEFPFQKTFLLSDESCSSLFRV*M 251 K CC P PT P+ ++ +P P S PPN + +KT L S+ Sbjct: 51 KDCC-LPSGGPT---PSSTHTPTPTPPSGKSCPPNGWYWNDEKTCCLPKWPTSTPTPT-- 104 Query: 252 LPPNCRGRLLKVFPEL*VAGC*LPSPRRGWDSELGLYCCEPSFPS 386 P + P P GWD L CC PS PS Sbjct: 105 -PSSAHHTSTHTSPSSTPTSTPPPQCSNGWDWISSLLCCTPSSPS 148
>FUS_HUMAN (P35637) RNA-binding protein FUS (Oncogene FUS) (Oncogene TLS)| (Translocated in liposarcoma protein) (POMp75) (75 kDa DNA-pairing protein) Length = 526 Score = 30.4 bits (67), Expect = 2.3 Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 2/67 (2%) Frame = -3 Query: 382 GNEGSQQYKPSSESQPLRGDGSQQPATHSSGNTLRRRPRQFGG--NIHTLNSEEQDSSDN 209 G G Y SS RG G + G + R +FGG + + + EQD+SDN Sbjct: 225 GGGGGGGYNRSSGGYEPRGRGGGRGGRGGMGGSDRGGFNKFGGPRDQGSRHDSEQDNSDN 284 Query: 208 RNVFWNG 188 +F G Sbjct: 285 NTIFVQG 291
>FUS_MOUSE (P56959) RNA-binding protein FUS (Pigpen protein)| Length = 518 Score = 30.4 bits (67), Expect = 2.3 Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 2/67 (2%) Frame = -3 Query: 382 GNEGSQQYKPSSESQPLRGDGSQQPATHSSGNTLRRRPRQFGG--NIHTLNSEEQDSSDN 209 G G Y SS RG G + G + R +FGG + + + EQD+SDN Sbjct: 218 GRGGGGGYNRSSGGYEPRGRGGGRGGRGGMGGSDRGGFNKFGGPRDQGSRHDSEQDNSDN 277 Query: 208 RNVFWNG 188 +F G Sbjct: 278 NTIFVQG 284
>FUS_BOVIN (Q28009) RNA-binding protein FUS (Pigpen protein)| Length = 512 Score = 30.4 bits (67), Expect = 2.3 Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 2/67 (2%) Frame = -3 Query: 382 GNEGSQQYKPSSESQPLRGDGSQQPATHSSGNTLRRRPRQFGG--NIHTLNSEEQDSSDN 209 G G Y SS RG G + G + R +FGG + + + EQD+SDN Sbjct: 211 GRGGGGGYNRSSGGYEPRGRGGGRGGRGGMGGSDRGGFNKFGGPRDQGSRHDSEQDNSDN 270 Query: 208 RNVFWNG 188 +F G Sbjct: 271 NTIFVQG 277
>HD_FUGRU (P51112) Huntingtin (Huntington disease protein homolog) (HD protein)| Length = 3148 Score = 30.0 bits (66), Expect = 3.0 Identities = 16/28 (57%), Positives = 20/28 (71%) Frame = +1 Query: 115 FPTYLTPTVPSPPISFHRLPTL*NSHSR 198 FP +LTPT+ + IS RLP L NSH+R Sbjct: 2387 FPAFLTPTLRNIIISLSRLP-LVNSHTR 2413
>Y4IR_RHISN (P55485) Hypothetical 17.6 kDa protein y4iR| Length = 161 Score = 29.3 bits (64), Expect = 5.1 Identities = 13/45 (28%), Positives = 21/45 (46%) Frame = +1 Query: 16 ILMYKGYNLTPRFVPSICINTVVQHLSCSQHIYFPTYLTPTVPSP 150 I++ +G P F PSI I H C + + P ++T +P Sbjct: 77 IVLIRGDGSEPHFSPSIKIEDAAVHFKCCRPVLDPVFVTADDATP 121
>BSCL2_RAT (Q5FVJ6) Seipin (Bernardinelli-Seip congenital lipodystrophy type 2| protein homolog) Length = 377 Score = 29.3 bits (64), Expect = 5.1 Identities = 12/28 (42%), Positives = 15/28 (53%) Frame = -3 Query: 391 DQLGNEGSQQYKPSSESQPLRGDGSQQP 308 D G EG + E QPL G+G Q+P Sbjct: 312 DPSGTEGQLSEEEKPEKQPLNGEGEQEP 339
>GALT6_BOVIN (Q5EA41) Polypeptide N-acetylgalactosaminyltransferase 6 (EC| 2.4.1.41) (Protein-UDP acetylgalactosaminyltransferase 6) (UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 6) (Polypeptide GalNAc transferase 6) (GalNAc-T6) (pp-GaNTase 6) Length = 622 Score = 28.9 bits (63), Expect = 6.7 Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 1/74 (1%) Frame = -3 Query: 373 GSQQYKPSSESQPLRGDGSQQPATHSSGNTLRRRPRQF-GGNIHTLNSEEQDSSDNRNVF 197 G QY + + LR + ++Q H+S TL R F G N EE + + ++ + Sbjct: 531 GGNQYFEYTTQRDLRHNIAKQLCLHASAGTLGLRSCHFTGKNSQVPKDEEWEFTQDQLIR 590 Query: 196 WNGNSTELGGDEKK 155 +G+ T L +KK Sbjct: 591 NSGSGTCLTSKDKK 604
>TIO_ATHV3 (Q9YJQ8) Protein tio| Length = 269 Score = 28.9 bits (63), Expect = 6.7 Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 11/90 (12%) Frame = -3 Query: 412 NPTPSNLDQLGNEGSQQYKPSSESQ-------PLRGDGSQQPAT----HSSGNTLRRRPR 266 +PTP N ++ Y P E+ P G G+ P ++G+ ++ Sbjct: 32 DPTPGTPPGPINSKNEDYPPPLENPGPNKSEGPPDGSGNSSPPVTMLVKNNGDRTKQDVS 91 Query: 265 QFGGNIHTLNSEEQDSSDNRNVFWNGNSTE 176 + GGN NS E + + + NGN T+ Sbjct: 92 ESGGNNSAPNSVESKHTSSSSSAGNGNETK 121
>FBXW7_HUMAN (Q969H0) F-box/WD-repeat protein 7 (F-box and WD-40 domain protein| 7) (F-box protein FBX30) (hCdc4) (Archipelago homolog) (hAgo) (SEL-10) Length = 707 Score = 28.9 bits (63), Expect = 6.7 Identities = 22/89 (24%), Positives = 39/89 (43%) Frame = -3 Query: 421 LRGNPTPSNLDQLGNEGSQQYKPSSESQPLRGDGSQQPATHSSGNTLRRRPRQFGGNIHT 242 LRGNP+ S +D+ Q + E Q + ++ T +G + PR G N Sbjct: 19 LRGNPSSSQVDE-----EQMNRVVEEEQQQQLRQQEEEHTARNGEVVGVEPRPGGQN--- 70 Query: 241 LNSEEQDSSDNRNVFWNGNSTELGGDEKK 155 +S++ +N N F + + G E++ Sbjct: 71 -DSQQGQLEENNNRFISVDEDSSGNQEEQ 98
>FA61B_XENTR (Q566L7) Protein FAM61B homolog| Length = 382 Score = 28.9 bits (63), Expect = 6.7 Identities = 20/74 (27%), Positives = 30/74 (40%) Frame = -3 Query: 385 LGNEGSQQYKPSSESQPLRGDGSQQPATHSSGNTLRRRPRQFGGNIHTLNSEEQDSSDNR 206 + G +Q P S+ PL + P + + RR PR+ GN T N + NR Sbjct: 179 VNQRGIRQSGPQSQPAPLNVPPAAAPVLGTVNDENRRPPRRRSGNRRTRN---RSRGQNR 235 Query: 205 NVFWNGNSTELGGD 164 N+ + GD Sbjct: 236 PTTVKENAIKFEGD 249
>UBP13_YEAST (P38187) Ubiquitin carboxyl-terminal hydrolase 13 (EC 3.1.2.15)| (Ubiquitin thioesterase 13) (Ubiquitin-specific-processing protease 13) (Deubiquitinating enzyme 13) Length = 688 Score = 28.9 bits (63), Expect = 6.7 Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 4/92 (4%) Frame = -3 Query: 460 LGAALSYVNPLSYLRGNPTPSNLDQLGNEGSQQYKPSSESQPLRGDGSQQ-PATHSSGNT 284 +G L+Y NP RG+ +NLD G S P + R S Q H + Sbjct: 312 VGRVLNYENPS---RGSSNSNNLDLKGESNSSLSTPLDKKDTRRSSSSSQISPEHRKKSA 368 Query: 283 LRRRPRQFGGNI-HTLNSEEQDS--SDNRNVF 197 L R P NI H+LN ++ + S R++F Sbjct: 369 LIRGPVL---NIDHSLNGSDKATLYSSLRDIF 397
>IL2RB_MOUSE (P16297) Interleukin-2 receptor beta chain precursor (IL-2| receptor) (P70-75) (High affinity IL-2 receptor beta subunit) (CD122 antigen) Length = 539 Score = 28.9 bits (63), Expect = 6.7 Identities = 18/69 (26%), Positives = 34/69 (49%) Frame = -3 Query: 436 NPLSYLRGNPTPSNLDQLGNEGSQQYKPSSESQPLRGDGSQQPATHSSGNTLRRRPRQFG 257 +PLS G P+ ++ D +G + + P + + L + S + A+ GN + + Sbjct: 454 SPLSLHEGLPSLASRDLMGLQRPLERMPEGDGEGLSANSSGEQASVPEGNLHGQDQDRGQ 513 Query: 256 GNIHTLNSE 230 G I TLN++ Sbjct: 514 GPILTLNTD 522
>RED1_RAT (P51400) Double-stranded RNA-specific editase 1 (EC 3.5.-.-) (dsRNA| adenosine deaminase) (RNA-editing deaminase 1) (RNA-editing enzyme 1) Length = 711 Score = 28.9 bits (63), Expect = 6.7 Identities = 17/57 (29%), Positives = 26/57 (45%) Frame = -3 Query: 412 NPTPSNLDQLGNEGSQQYKPSSESQPLRGDGSQQPATHSSGNTLRRRPRQFGGNIHT 242 N + S++D N P S P G+G + G+T R+RP + G N H+ Sbjct: 8 NMSSSSIDVKENRNLDNMPPKDSSTPGPGEGIPL-SNGGGGSTSRKRPLEEGSNGHS 63
>ASPX_HUMAN (P26436) Acrosomal protein SP-10 precursor (Acrosomal vesicle| protein 1) Length = 265 Score = 28.5 bits (62), Expect = 8.7 Identities = 21/63 (33%), Positives = 26/63 (41%) Frame = -3 Query: 457 GAALSYVNPLSYLRGNPTPSNLDQLGNEGSQQYKPSSESQPLRGDGSQQPATHSSGNTLR 278 G LS PLS L PS+ G GS + +PS E + G Q H+SG Sbjct: 121 GEHLSGEQPLSELESGEQPSDEQPSGEHGSGE-QPSGE----QASGEQPSGEHASGEQAS 175 Query: 277 RRP 269 P Sbjct: 176 GAP 178 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 71,137,535 Number of Sequences: 219361 Number of extensions: 1527019 Number of successful extensions: 4690 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 4471 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4684 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2968155324 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
