ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart06b06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC136448.2| Oryza sativa (japonica cultivar-group) chromosome... 74 4e-10
2dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 74 4e-10
3dbj|AK067658.1| Oryza sativa (japonica cultivar-group) cDNA clon... 74 4e-10
4gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 74 4e-10
5dbj|AK071663.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.10
6gb|AF467804.1| Tachypleus tridentatus factor C precursor, mRNA, ... 44 0.40
7gb|S77064.1| factor C=endotoxin-sensitive intracellular serine p... 44 0.40
8gb|S77063.1| factor C=endotoxin-sensitive intracellular serine p... 44 0.40
9gb|AC120132.11| Mus musculus chromosome 6, clone RP23-105D1, com... 44 0.40
10dbj|D90271.1|TATLFC1 Tachypleus tridentatus mRNA for limulus fac... 44 0.40
11emb|AL732618.6| Human DNA sequence from clone RP11-25L19 on chro... 42 1.6
12gb|AC115778.11| Mus musculus chromosome 8, clone RP23-148F13, co... 42 1.6
13emb|AL627427.11| Human DNA sequence from clone RP11-350G11 on ch... 40 6.2
14emb|CR376863.10| Zebrafish DNA sequence from clone DKEY-93F15 in... 40 6.2
15gb|AC142249.6| Mus musculus chromosome 19, clone RP23-388O22, co... 40 6.2
16gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome 40 6.2
17emb|CR385171.1| Gallus gallus finished cDNA, clone ChEST539a1 40 6.2
18dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
19gb|AC175466.2| Gallus gallus BAC clone CH261-8A20 from chromosom... 40 6.2
20dbj|AP002861.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
21dbj|AP001633.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
22dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome 40 6.2
23gb|AY108418.1| Zea mays PCO104228 mRNA sequence 40 6.2
24gb|AC132449.4| Mus musculus BAC clone RP23-183J18 from 8, comple... 40 6.2
25emb|CT009684.7| Mouse DNA sequence from clone RP23-127L21 on chr... 40 6.2 
>gb|AC136448.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0077O14, complete sequence
          Length = 124915

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 109/133 (81%)
 Strand = Plus / Minus

                                                                         
Query: 154   atttcttttcatcgcctcccaactctgtagaattcccattccagaagacgtttctattat 213
             ||||||| || |||||||| ||||||||||||||||| |||||| | || || |||| ||
Sbjct: 78012 atttcttatcttcgcctccgaactctgtagaattcccgttccagtaaacattcctatcat 77953

                                                                         
Query: 214   cagatgaatcttgttcttcactgtttagagtgtgaatgttgccaccgaactgtcggggcc 273
             ||||||   |||| || |||||  | | | |||||| |||||||||||| ||||  ||||
Sbjct: 77952 cagatgggccttggtcatcacttctcaaactgtgaacgttgccaccgaattgtctcggcc 77893

                          
Query: 274   gccttctcaaggt 286
             |||| ||||||||
Sbjct: 77892 gcctcctcaaggt 77880



 Score = 46.1 bits (23), Expect = 0.10
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                            
Query: 410   atttcctctcaagtaggacaatggattcaca 440
             |||| ||||||||||||||| ||||||||||
Sbjct: 77591 atttgctctcaagtaggacagtggattcaca 77561
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 109/133 (81%)
 Strand = Plus / Plus

                                                                            
Query: 154      atttcttttcatcgcctcccaactctgtagaattcccattccagaagacgtttctattat 213
                ||||||| || |||||||| ||||||||||||||||| |||||| | || || |||| ||
Sbjct: 10637820 atttcttatcttcgcctccgaactctgtagaattcccgttccagtaaacattcctatcat 10637879

                                                                            
Query: 214      cagatgaatcttgttcttcactgtttagagtgtgaatgttgccaccgaactgtcggggcc 273
                ||||||   |||| || |||||  | | | |||||| |||||||||||| ||||  ||||
Sbjct: 10637880 cagatgggccttggtcatcacttctcaaactgtgaacgttgccaccgaattgtctcggcc 10637939

                             
Query: 274      gccttctcaaggt 286
                |||| ||||||||
Sbjct: 10637940 gcctcctcaaggt 10637952



 Score = 46.1 bits (23), Expect = 0.10
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                               
Query: 410      atttcctctcaagtaggacaatggattcaca 440
                |||| ||||||||||||||| ||||||||||
Sbjct: 10638241 atttgctctcaagtaggacagtggattcaca 10638271
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>dbj|AK067658.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013114I10, full
            insert sequence
          Length = 2068

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 109/133 (81%)
 Strand = Plus / Minus

                                                                        
Query: 154  atttcttttcatcgcctcccaactctgtagaattcccattccagaagacgtttctattat 213
            ||||||| || |||||||| ||||||||||||||||| |||||| | || || |||| ||
Sbjct: 1835 atttcttatcttcgcctccgaactctgtagaattcccgttccagtaaacattcctatcat 1776

                                                                        
Query: 214  cagatgaatcttgttcttcactgtttagagtgtgaatgttgccaccgaactgtcggggcc 273
            ||||||   |||| || |||||  | | | |||||| |||||||||||| ||||  ||||
Sbjct: 1775 cagatgggccttggtcatcacttctcaaactgtgaacgttgccaccgaattgtctcggcc 1716

                         
Query: 274  gccttctcaaggt 286
            |||| ||||||||
Sbjct: 1715 gcctcctcaaggt 1703



 Score = 46.1 bits (23), Expect = 0.10
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 410  atttcctctcaagtaggacaatggattcaca 440
            |||| ||||||||||||||| ||||||||||
Sbjct: 1543 atttgctctcaagtaggacagtggattcaca 1513
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 109/133 (81%)
 Strand = Plus / Plus

                                                                            
Query: 154      atttcttttcatcgcctcccaactctgtagaattcccattccagaagacgtttctattat 213
                ||||||| || |||||||| ||||||||||||||||| |||||| | || || |||| ||
Sbjct: 10709364 atttcttatcttcgcctccgaactctgtagaattcccgttccagtaaacattcctatcat 10709423

                                                                            
Query: 214      cagatgaatcttgttcttcactgtttagagtgtgaatgttgccaccgaactgtcggggcc 273
                ||||||   |||| || |||||  | | | |||||| |||||||||||| ||||  ||||
Sbjct: 10709424 cagatgggccttggtcatcacttctcaaactgtgaacgttgccaccgaattgtctcggcc 10709483

                             
Query: 274      gccttctcaaggt 286
                |||| ||||||||
Sbjct: 10709484 gcctcctcaaggt 10709496



 Score = 46.1 bits (23), Expect = 0.10
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                               
Query: 410      atttcctctcaagtaggacaatggattcaca 440
                |||| ||||||||||||||| ||||||||||
Sbjct: 10709785 atttgctctcaagtaggacagtggattcaca 10709815
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>dbj|AK071663.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023106G11, full
            insert sequence
          Length = 1557

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 410  atttcctctcaagtaggacaatggattcaca 440
            |||| ||||||||||||||| ||||||||||
Sbjct: 1457 atttgctctcaagtaggacagtggattcaca 1427
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>gb|AF467804.1| Tachypleus tridentatus factor C precursor, mRNA, complete cds
          Length = 3060

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 177  tctgtagaattcccattccaga 198
            ||||||||||||||||||||||
Sbjct: 2309 tctgtagaattcccattccaga 2288
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>gb|S77064.1| factor C=endotoxin-sensitive intracellular serine protease zymogen
            {clone CrFC26} [Carcinoscorpius rotundicauda=Singapore
            horseshoe crabs, blood, amoebocytes, mRNA, 4182 nt]
          Length = 4182

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 177  tctgtagaattcccattccaga 198
            ||||||||||||||||||||||
Sbjct: 3069 tctgtagaattcccattccaga 3048
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>gb|S77063.1| factor C=endotoxin-sensitive intracellular serine protease zymogen
            {clone CrFC21} [Carcinoscorpius rotundicauda=Singapore
            horseshoe crabs, blood, amoebocytes, mRNA, 3438 nt]
          Length = 3438

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 177  tctgtagaattcccattccaga 198
            ||||||||||||||||||||||
Sbjct: 2326 tctgtagaattcccattccaga 2305
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>gb|AC120132.11| Mus musculus chromosome 6, clone RP23-105D1, complete sequence
          Length = 203185

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 110    tttatttcccaacatatttaac 131
              ||||||||||||||||||||||
Sbjct: 126093 tttatttcccaacatatttaac 126072
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>dbj|D90271.1|TATLFC1 Tachypleus tridentatus mRNA for limulus factor C, complete cds
          Length = 3467

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 177  tctgtagaattcccattccaga 198
            ||||||||||||||||||||||
Sbjct: 2353 tctgtagaattcccattccaga 2332
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>emb|AL732618.6| Human DNA sequence from clone RP11-25L19 on chromosome 1, complete
             sequence
          Length = 95333

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 218   tgaatcttgttcttcactgtt 238
             |||||||||||||||||||||
Sbjct: 10220 tgaatcttgttcttcactgtt 10240
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>gb|AC115778.11| Mus musculus chromosome 8, clone RP23-148F13, complete sequence
          Length = 234778

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 182   agaattcccattccagaagac 202
             |||||||||||||||||||||
Sbjct: 53933 agaattcccattccagaagac 53913
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>emb|AL627427.11| Human DNA sequence from clone RP11-350G11 on chromosome 13, complete
             sequence
          Length = 102564

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 15    aatacttatgtataagggctataa 38
             |||||||||||||||||| |||||
Sbjct: 16876 aatacttatgtataagggatataa 16853
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>emb|CR376863.10| Zebrafish DNA sequence from clone DKEY-93F15 in linkage group 5,
             complete sequence
          Length = 183007

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 27    taagggctataatttaacac 46
             ||||||||||||||||||||
Sbjct: 15627 taagggctataatttaacac 15646
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>gb|AC142249.6| Mus musculus chromosome 19, clone RP23-388O22, complete sequence
          Length = 201321

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 422   gtaggacaatggattcacat 441
             ||||||||||||||||||||
Sbjct: 59351 gtaggacaatggattcacat 59370
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>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome
          Length = 3046682

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 357    ttgtactgctgcgagccctc 376
              ||||||||||||||||||||
Sbjct: 858125 ttgtactgctgcgagccctc 858144
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>emb|CR385171.1| Gallus gallus finished cDNA, clone ChEST539a1
          Length = 1061

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 114 tttcccaacatatttaactc 133
           ||||||||||||||||||||
Sbjct: 884 tttcccaacatatttaactc 903
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 286     tatttccagagctatgagta 305
               ||||||||||||||||||||
Sbjct: 6378380 tatttccagagctatgagta 6378361
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>gb|AC175466.2| Gallus gallus BAC clone CH261-8A20 from chromosome ul, complete
            sequence
          Length = 233533

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 182  agaattcccattccagaaga 201
            ||||||||||||||||||||
Sbjct: 8541 agaattcccattccagaaga 8522
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>dbj|AP002861.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
           PAC clone:P0665D10
          Length = 134967

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 286 tatttccagagctatgagta 305
           ||||||||||||||||||||
Sbjct: 775 tatttccagagctatgagta 756
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>dbj|AP001633.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0515G01
          Length = 175072

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 286    tatttccagagctatgagta 305
              ||||||||||||||||||||
Sbjct: 149446 tatttccagagctatgagta 149427
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>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome
          Length = 4659019

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 308    tggttgttgacttccatcaccacgaaga 335
              ||||||| ||||||||||||| ||||||
Sbjct: 977984 tggttgtcgacttccatcacctcgaaga 978011
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>gb|AY108418.1| Zea mays PCO104228 mRNA sequence
          Length = 857

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 41/48 (85%)
 Strand = Plus / Minus

                                                           
Query: 395 atttgatggggtgggatttcctctcaagtaggacaatggattcacata 442
           |||||||| | ||| |||||| |||| |||||| | ||||||||||||
Sbjct: 331 atttgatgagttggtatttcccctcaggtaggagagtggattcacata 284
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>gb|AC132449.4| Mus musculus BAC clone RP23-183J18 from 8, complete sequence
          Length = 206312

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 82     gttcaacacctcagttgttc 101
              ||||||||||||||||||||
Sbjct: 162200 gttcaacacctcagttgttc 162181
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>emb|CT009684.7| Mouse DNA sequence from clone RP23-127L21 on chromosome 13, complete
             sequence
          Length = 205067

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 288   tttccagagctatgagtagc 307
             ||||||||||||||||||||
Sbjct: 45185 tttccagagctatgagtagc 45166


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,687,126
Number of Sequences: 3902068
Number of extensions: 4687126
Number of successful extensions: 74267
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 74155
Number of HSP's gapped (non-prelim): 112
length of query: 462
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 440
effective length of database: 17,147,199,772
effective search space: 7544767899680
effective search space used: 7544767899680
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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