ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart06b02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CAKI_DROME (Q24210) Calcium/calmodulin-dependent protein kinase ... 31 1.5
2P2SAF_ARATH (O82660) Photosystem II stability/assembly factor HC... 30 2.0
3M4K4_HUMAN (O95819) Mitogen-activated protein kinase kinase kina... 30 3.4
4M4K4_MOUSE (P97820) Mitogen-activated protein kinase kinase kina... 29 4.4
5EFTS_RHOPA (P61338) Elongation factor Ts (EF-Ts) 28 7.6
6ADA2B_PROHA (O19054) Alpha-2B adrenergic receptor (Alpha-2B adre... 28 9.9
7ASNS_ARATH (P49078) Asparagine synthetase [glutamine-hydrolyzing... 28 9.9

>CAKI_DROME (Q24210) Calcium/calmodulin-dependent protein kinase (EC 2.7.11.17)|
           (CAKI) (Peripheral plasma membrane protein CaMGUK)
          Length = 898

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 313 LHGGRIYRSRGTSVGDSLVSVAGQSRQHRS 224
           +HGG I+R     VGD +  + GQ  QH+S
Sbjct: 524 MHGGMIHRQATLHVGDEIREINGQPVQHQS 553



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>P2SAF_ARATH (O82660) Photosystem II stability/assembly factor HCF136,|
           chloroplast precursor
          Length = 403

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 331 GNLWCNLHGGRIYRSRGTSVGDSLVSVAGQSR 236
           G LW  + GG +Y S+GT + +    V  QSR
Sbjct: 300 GGLWLLVRGGGLYLSKGTGITEEFEEVPVQSR 331



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>M4K4_HUMAN (O95819) Mitogen-activated protein kinase kinase kinase kinase 4|
           (EC 2.7.11.1) (MAPK/ERK kinase kinase kinase 4) (MEK
           kinase kinase 4) (MEKKK 4) (HPK/GCK-like kinase HGK)
           (Nck-interacting kinase)
          Length = 1239

 Score = 29.6 bits (65), Expect = 3.4
 Identities = 17/47 (36%), Positives = 27/47 (57%)
 Frame = +2

Query: 293 VDPSTMKVAPQISSSSAGTAVTLFLGFSYDLRPPRAFQ*KQPCGKGA 433
           +DP  ++++P     S+GT VT  +GFS D   P A + + P  KG+
Sbjct: 860 IDPRLLQISP-----SSGTTVTSVVGFSCDGMRPEAIR-QDPTRKGS 900



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>M4K4_MOUSE (P97820) Mitogen-activated protein kinase kinase kinase kinase 4|
           (EC 2.7.11.1) (MAPK/ERK kinase kinase kinase 4) (MEK
           kinase kinase 4) (MEKKK 4) (HPK/GCK-like kinase HGK)
           (Nck-interacting kinase)
          Length = 1233

 Score = 29.3 bits (64), Expect = 4.4
 Identities = 17/47 (36%), Positives = 27/47 (57%)
 Frame = +2

Query: 293 VDPSTMKVAPQISSSSAGTAVTLFLGFSYDLRPPRAFQ*KQPCGKGA 433
           +DP  ++++P     S+GT VT  +GFS D   P A + + P  KG+
Sbjct: 854 IDPRLLQISP-----SSGTTVTSVVGFSCDGLRPEAIR-QDPTRKGS 894



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>EFTS_RHOPA (P61338) Elongation factor Ts (EF-Ts)|
          Length = 308

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +1

Query: 241 FAQRRKQENLLLKCRENG-RSFHHEGCTTDFLLICRHSGHLVLGILVRLEASXGVPVE 411
           + Q+ K EN++ K  ENG ++++ E C  +   I    G  V   +   E   G P++
Sbjct: 220 YRQQGKPENMIEKIVENGLKTYYKEVCLLEQAYIHDEKGKSVAQAVKEAEGKVGAPIK 277



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>ADA2B_PROHA (O19054) Alpha-2B adrenergic receptor (Alpha-2B adrenoceptor)|
           (Alpha-2B adrenoreceptor) (Fragment)
          Length = 389

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -2

Query: 375 ENPKNKVTAVPADEEEICGATFMV-EGSTVLAALQ*EILLFPSLGKAG 235
           E   ++  +VPA     CG      +GS VLA L+ ++LL   +G AG
Sbjct: 287 EEEGSRPLSVPASPASACGPHLQQPQGSQVLATLRGQVLLGRGVGAAG 334



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>ASNS_ARATH (P49078) Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4)|
           (Glutamine-dependent asparagine synthetase)
          Length = 583

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -2

Query: 426 FPQGCFYWNALGGLKSYENPKNKVTAVPADEEE 328
           FP G FY + LGG K + NP     +VP+   E
Sbjct: 173 FPPGHFYSSKLGGFKQWYNPPWFNESVPSTPYE 205


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,116,774
Number of Sequences: 219361
Number of extensions: 975097
Number of successful extensions: 2575
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2575
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2570413340
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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