Clone Name | rbart06b02 |
---|---|
Clone Library Name | barley_pub |
>gb|L28008.1|WHTWALI Triticum aestivum (wali7) mRNA, 3' end, partial cds Length = 956 Score = 575 bits (290), Expect = e-161 Identities = 379/406 (93%), Gaps = 5/406 (1%) Strand = Plus / Minus Query: 33 gaaagcttatttgctactaccttataattgttacattcaactgaaaacggccggtcttga 92 |||||||||||||||||| | ||| |||||||||| |||||||| |||||||||||||| Sbjct: 943 gaaagcttatttgctactgcatta--attgttacatccaactgaagacggccggtcttga 886 Query: 93 atcccctgcgagaatttgaagagctagagatacagatgatcagattcacaaccgaacagt 152 |||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||||| Sbjct: 885 atccactgcgagaatttgaacagctagagatacagatgatcagatacacaaccgaacagt 826 Query: 153 tcccataagatcacaagagagagtagcacacgcgccttgttgcattatattacaccacca 212 || |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 825 tcacataagatcacaagagag--tagcacacgcgccttgttgcattatattacaccacca 768 Query: 213 ccacctacacacgaccggtgttgcctgctttgcccagcgacggaaacaagagaatctcct 272 ||| |||||||||| ||| |||||||||||||||||||||| || || ||||||||||| Sbjct: 767 ccatctacacacgaacggcgttgcctgctttgcccagcgacagagacgggagaatctcct 708 Query: 273 actgaagtgccgcgagaacggtagatccttccaccatgaaggttgcaccacagatttcct 332 ||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||| Sbjct: 707 actgaagtgccgcgacaacggtagatccttccaccatgaagg-tgcaccacatatttcct 649 Query: 333 cctcatctgcaggcacagcggtcaccttgttcttgggattctcgtacgacttgaggcctc 392 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 648 cctcatctgcaggcacagcggtgaccttgttcttgggattctcgtacgacttgaggcctc 589 Query: 393 cnagggcgttccagtagaagcagccttgcgggaaaggcgccngtga 438 | || ||||||||||||||||| |||||||||||||||||| |||| Sbjct: 588 caagagcgttccagtagaagcaaccttgcgggaaaggcgccagtga 543
>gb|AY106409.1| Zea mays PCO130569 mRNA sequence Length = 1186 Score = 109 bits (55), Expect = 8e-21 Identities = 114/134 (85%) Strand = Plus / Minus Query: 299 ccttccaccatgaaggttgcaccacagatttcctcctcatctgcaggcacagcggtcacc 358 ||||||||| ||||||||| || |||||||||||||| | |||||| || || ||||| Sbjct: 768 ccttccacctggaaggttgcgccgcagatttcctcctcgtttgcaggaacggcagtcact 709 Query: 359 ttgttcttgggattctcgtacgacttgaggcctccnagggcgttccagtagaagcagcct 418 |||||||||||||||||||| |||| | ||||| ||||| || |||||||||| ||| Sbjct: 708 ttgttcttgggattctcgtagcacttcaatcctccaagggcattagagtagaagcaacct 649 Query: 419 tgcgggaaaggcgc 432 |||||||||||||| Sbjct: 648 tgcgggaaaggcgc 635
>gb|BT017472.1| Zea mays clone EL01N0408D08.c mRNA sequence Length = 1157 Score = 93.7 bits (47), Expect = 5e-16 Identities = 76/86 (88%) Strand = Plus / Minus Query: 347 acagcggtcaccttgttcttgggattctcgtacgacttgaggcctccnagggcgttccag 406 |||||||| ||||||| |||||| |||||||| ||||||| ||||| |||||||| || Sbjct: 744 acagcggtgaccttgtgcttggggttctcgtagcacttgagccctccgagggcgttggag 685 Query: 407 tagaagcagccttgcgggaaaggcgc 432 |||||||||||||||||||| ||||| Sbjct: 684 tagaagcagccttgcgggaacggcgc 659
>gb|AY104105.1| Zea mays PCO130572 mRNA sequence Length = 1280 Score = 93.7 bits (47), Expect = 5e-16 Identities = 76/86 (88%) Strand = Plus / Minus Query: 347 acagcggtcaccttgttcttgggattctcgtacgacttgaggcctccnagggcgttccag 406 |||||||| ||||||| |||||| |||||||| ||||||| ||||| |||||||| || Sbjct: 734 acagcggtgaccttgtgcttggggttctcgtagcacttgagccctccgagggcgttggag 675 Query: 407 tagaagcagccttgcgggaaaggcgc 432 |||||||||||||||||||| ||||| Sbjct: 674 tagaagcagccttgcgggaacggcgc 649
>gb|BT016691.1| Zea mays clone Contig524 mRNA sequence Length = 1198 Score = 89.7 bits (45), Expect = 7e-15 Identities = 116/140 (82%) Strand = Plus / Plus Query: 293 gtagatccttccaccatgaaggttgcaccacagatttcctcctcatctgcaggcacagcg 352 |||| |||||||||| ||||| ||| || || ||||||||||| | |||||| || || Sbjct: 419 gtagctccttccacctggaagggtgcgccgcaaatttcctcctcgtttgcaggaacggca 478 Query: 353 gtcaccttgttcttgggattctcgtacgacttgaggcctccnagggcgttccagtagaag 412 ||||| |||||||||||||||||||| |||| | ||||| ||||| || |||||||| Sbjct: 479 gtcactttgttcttgggattctcgtagcacttcaatcctccaagggcattagagtagaag 538 Query: 413 cagccttgcgggaaaggcgc 432 || || |||||||||||||| Sbjct: 539 caaccctgcgggaaaggcgc 558
>dbj|AK119185.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-G04, full insert sequence Length = 1135 Score = 75.8 bits (38), Expect = 1e-10 Identities = 100/121 (82%) Strand = Plus / Minus Query: 309 tgaaggttgcaccacagatttcctcctcatctgcaggcacagcggtcaccttgttcttgg 368 ||||||||||||||||||| || || |||| |||||| ||||| |||||||||||||| | Sbjct: 887 tgaaggttgcaccacagatctcttcttcatttgcaggaacagcagtcaccttgttctttg 828 Query: 369 gattctcgtacgacttgaggcctccnagggcgttccagtagaagcagccttgcgggaaag 428 | ||||| || |||| | |||||| || || || | |||||||| ||||| ||||||| Sbjct: 827 ggttctcatagcacttcaagcctccaagagcattggaatagaagcaaccttgtgggaaag 768 Query: 429 g 429 | Sbjct: 767 g 767
>dbj|AK104445.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-B05, full insert sequence Length = 1124 Score = 75.8 bits (38), Expect = 1e-10 Identities = 100/121 (82%) Strand = Plus / Minus Query: 309 tgaaggttgcaccacagatttcctcctcatctgcaggcacagcggtcaccttgttcttgg 368 ||||||||||||||||||| || || |||| |||||| ||||| |||||||||||||| | Sbjct: 887 tgaaggttgcaccacagatctcttcttcatttgcaggaacagcagtcaccttgttctttg 828 Query: 369 gattctcgtacgacttgaggcctccnagggcgttccagtagaagcagccttgcgggaaag 428 | ||||| || |||| | |||||| || || || | |||||||| ||||| ||||||| Sbjct: 827 ggttctcatagcacttcaagcctccaagagcattggaatagaagcaaccttgtgggaaag 768 Query: 429 g 429 | Sbjct: 767 g 767
>dbj|AK071762.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023109H06, full insert sequence Length = 1136 Score = 75.8 bits (38), Expect = 1e-10 Identities = 100/121 (82%) Strand = Plus / Minus Query: 309 tgaaggttgcaccacagatttcctcctcatctgcaggcacagcggtcaccttgttcttgg 368 ||||||||||||||||||| || || |||| |||||| ||||| |||||||||||||| | Sbjct: 888 tgaaggttgcaccacagatctcttcttcatttgcaggaacagcagtcaccttgttctttg 829 Query: 369 gattctcgtacgacttgaggcctccnagggcgttccagtagaagcagccttgcgggaaag 428 | ||||| || |||| | |||||| || || || | |||||||| ||||| ||||||| Sbjct: 828 ggttctcatagcacttcaagcctccaagagcattggaatagaagcaaccttgtgggaaag 769 Query: 429 g 429 | Sbjct: 768 g 768
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 69.9 bits (35), Expect = 7e-09 Identities = 59/67 (88%) Strand = Plus / Plus Query: 309 tgaaggttgcaccacagatttcctcctcatctgcaggcacagcggtcaccttgttcttgg 368 ||||||||||||||||||| || || |||| |||||| ||||| |||||||||||||| | Sbjct: 2187475 tgaaggttgcaccacagatctcttcttcatttgcaggaacagcagtcaccttgttctttg 2187534 Query: 369 gattctc 375 | ||||| Sbjct: 2187535 ggttctc 2187541
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 69.9 bits (35), Expect = 7e-09 Identities = 59/67 (88%) Strand = Plus / Plus Query: 309 tgaaggttgcaccacagatttcctcctcatctgcaggcacagcggtcaccttgttcttgg 368 ||||||||||||||||||| || || |||| |||||| ||||| |||||||||||||| | Sbjct: 2195256 tgaaggttgcaccacagatctcttcttcatttgcaggaacagcagtcaccttgttctttg 2195315 Query: 369 gattctc 375 | ||||| Sbjct: 2195316 ggttctc 2195322
>emb|BX000499.1|CNS08CDP Oryza sativa chromosome 11, . BAC OSJNBa0039D03 of library OSJNBa from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 125593 Score = 69.9 bits (35), Expect = 7e-09 Identities = 59/67 (88%) Strand = Plus / Plus Query: 309 tgaaggttgcaccacagatttcctcctcatctgcaggcacagcggtcaccttgttcttgg 368 ||||||||||||||||||| || || |||| |||||| ||||| |||||||||||||| | Sbjct: 84169 tgaaggttgcaccacagatctcttcttcatttgcaggaacagcagtcaccttgttctttg 84228 Query: 369 gattctc 375 | ||||| Sbjct: 84229 ggttctc 84235
>dbj|AK104347.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-F10, full insert sequence Length = 1101 Score = 61.9 bits (31), Expect = 2e-06 Identities = 70/83 (84%) Strand = Plus / Minus Query: 293 gtagatccttccaccatgaaggttgcaccacagatttcctcctcatctgcaggcacagcg 352 ||||||||||||||| ||||||||||||| || ||||| || || | ||||| || ||| Sbjct: 857 gtagatccttccaccttgaaggttgcaccgcaaatttcttcttctttggcaggaactgcg 798 Query: 353 gtcaccttgttcttgggattctc 375 |||||||||| ||| || ||||| Sbjct: 797 gtcaccttgtgctttgggttctc 775
>dbj|AK104102.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-202-B06, full insert sequence Length = 1099 Score = 61.9 bits (31), Expect = 2e-06 Identities = 70/83 (84%) Strand = Plus / Minus Query: 293 gtagatccttccaccatgaaggttgcaccacagatttcctcctcatctgcaggcacagcg 352 ||||||||||||||| ||||||||||||| || ||||| || || | ||||| || ||| Sbjct: 869 gtagatccttccaccttgaaggttgcaccgcaaatttcttcttctttggcaggaactgcg 810 Query: 353 gtcaccttgttcttgggattctc 375 |||||||||| ||| || ||||| Sbjct: 809 gtcaccttgtgctttgggttctc 787
>dbj|AK067141.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013095J21, full insert sequence Length = 1130 Score = 61.9 bits (31), Expect = 2e-06 Identities = 70/83 (84%) Strand = Plus / Minus Query: 293 gtagatccttccaccatgaaggttgcaccacagatttcctcctcatctgcaggcacagcg 352 ||||||||||||||| ||||||||||||| || ||||| || || | ||||| || ||| Sbjct: 870 gtagatccttccaccttgaaggttgcaccgcaaatttcttcttctttggcaggaactgcg 811 Query: 353 gtcaccttgttcttgggattctc 375 |||||||||| ||| || ||||| Sbjct: 810 gtcaccttgtgctttgggttctc 788
>dbj|AB012110.1| Vigna radiata mRNA for ARG10, complete cds Length = 959 Score = 48.1 bits (24), Expect = 0.024 Identities = 66/80 (82%) Strand = Plus / Minus Query: 296 gatccttccaccatgaaggttgcaccacagatttcctcctcatctgcaggcacagcggtc 355 ||||| |||||| | || |||||||| ||||||||||| || || ||||| || || || Sbjct: 726 gatccctccaccttaaaagttgcaccccagatttcctcttcttcggcaggtactgcagta 667 Query: 356 accttgttcttgggattctc 375 | ||||||||| |||||||| Sbjct: 666 atcttgttctttggattctc 647
>dbj|AP004960.1| Lotus japonicus genomic DNA, chromosome 6, clone:LjT19B18, TM0139, complete sequence Length = 106089 Score = 46.1 bits (23), Expect = 0.096 Identities = 56/67 (83%) Strand = Plus / Minus Query: 309 tgaaggttgcaccacagatttcctcctcatctgcaggcacagcggtcaccttgttcttgg 368 ||||||||||||| || ||||||||||| || ||||| || || || | ||| ||||| | Sbjct: 71058 tgaaggttgcaccccaaatttcctcctcctcagcaggaactgcagtgatcttattcttag 70999 Query: 369 gattctc 375 ||||||| Sbjct: 70998 gattctc 70992
>emb|Z99976.1|MAZ99976 Musa acuminata mRNA for putative WALI7-related protein (clone pBAN ED141) Length = 750 Score = 46.1 bits (23), Expect = 0.096 Identities = 80/99 (80%) Strand = Plus / Plus Query: 280 tgccgcgagaacggtagatccttccaccatgaaggttgcaccacagatttcctcctcatc 339 |||||||| ||| | ||| ||||||||| |||| || |||||||| | ||| ||||| | Sbjct: 324 tgccgcgacaaccgcagacccttccaccttgaaagtggcaccacatacttcttcctcgtt 383 Query: 340 tgcaggcacagcggtcaccttgttcttgggattctcgta 378 | || | || ||||| ||||||| ||| ||||||||||| Sbjct: 384 ttcaagaacggcggtgaccttgtgcttaggattctcgta 422
>gb|AC025674.10| Homo sapiens chromosome 8, clone RP11-513O17, complete sequence Length = 152451 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 106 atttgaagagctagagatacag 127 |||||||||||||||||||||| Sbjct: 75017 atttgaagagctagagatacag 75038
>gb|AC010894.10| Homo sapiens BAC clone RP11-483E17 from 2, complete sequence Length = 181663 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 15 ttcttttagatggagaaggaaa 36 |||||||||||||||||||||| Sbjct: 25284 ttcttttagatggagaaggaaa 25305
>dbj|AP006689.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT27F14, TM0387, complete sequence Length = 96031 Score = 44.1 bits (22), Expect = 0.38 Identities = 28/30 (93%) Strand = Plus / Plus Query: 309 tgaaggttgcaccacagatttcctcctcat 338 ||||||||||||| ||||||||||| |||| Sbjct: 41219 tgaaggttgcaccccagatttcctcttcat 41248
>gb|AC011284.3| Homo sapiens BAC clone CTD-2326L19 from 7, complete sequence Length = 92959 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 108 ttgaagagctagagatacaga 128 ||||||||||||||||||||| Sbjct: 59521 ttgaagagctagagatacaga 59541
>gb|AC142336.1| Pan troglodytes BAC clone RP43-39E5 from 7, complete sequence Length = 75539 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 108 ttgaagagctagagatacaga 128 ||||||||||||||||||||| Sbjct: 47729 ttgaagagctagagatacaga 47709
>gb|DQ107223.1| Astragalus brandegei clone 5 aluminum-induced protein-like gene, partial sequence Length = 327 Score = 42.1 bits (21), Expect = 1.5 Identities = 36/41 (87%) Strand = Plus / Plus Query: 311 aaggttgcaccacagatttcctcctcatctgcaggcacagc 351 |||||||| || ||||||||||| |||| ||||||||||| Sbjct: 160 aaggttgcgccccagatttcctcatcattagcaggcacagc 200
>gb|DQ107222.1| Astragalus brandegei clone 6 aluminum-induced protein-like gene, partial sequence Length = 320 Score = 42.1 bits (21), Expect = 1.5 Identities = 36/41 (87%) Strand = Plus / Plus Query: 311 aaggttgcaccacagatttcctcctcatctgcaggcacagc 351 |||||||| || ||||||||||| |||| ||||||||||| Sbjct: 152 aaggttgcgccccagatttcctcatcattagcaggcacagc 192
>gb|DQ107191.1| Astragalus falcatus clone 3 aluminum-induced protein-like gene, partial sequence Length = 332 Score = 42.1 bits (21), Expect = 1.5 Identities = 36/41 (87%) Strand = Plus / Plus Query: 311 aaggttgcaccacagatttcctcctcatctgcaggcacagc 351 |||||||| || ||||||||||| |||| ||||||||||| Sbjct: 167 aaggttgcgccccagatttcctcatcattagcaggcacagc 207
>gb|DQ107190.1| Astragalus falcatus clone 2 aluminum-induced protein-like gene, partial sequence Length = 332 Score = 42.1 bits (21), Expect = 1.5 Identities = 36/41 (87%) Strand = Plus / Plus Query: 311 aaggttgcaccacagatttcctcctcatctgcaggcacagc 351 |||||||| || ||||||||||| |||| ||||||||||| Sbjct: 167 aaggttgcgccccagatttcctcatcattagcaggcacagc 207
>gb|DQ107189.1| Astragalus falcatus clone 12 aluminum-induced protein-like gene, partial sequence Length = 332 Score = 42.1 bits (21), Expect = 1.5 Identities = 36/41 (87%) Strand = Plus / Plus Query: 311 aaggttgcaccacagatttcctcctcatctgcaggcacagc 351 |||||||| || ||||||||||| |||| ||||||||||| Sbjct: 167 aaggttgcgccccagatttcctcatcattagcaggcacagc 207
>gb|DQ107188.1| Astragalus falcatus clone 11 aluminum-induced protein-like gene, partial sequence Length = 332 Score = 42.1 bits (21), Expect = 1.5 Identities = 36/41 (87%) Strand = Plus / Plus Query: 311 aaggttgcaccacagatttcctcctcatctgcaggcacagc 351 |||||||| || ||||||||||| |||| ||||||||||| Sbjct: 167 aaggttgcgccccagatttcctcatcattagcaggcacagc 207
>gb|DQ107187.1| Astragalus falcatus clone 10 aluminum-induced protein-like gene, partial sequence Length = 331 Score = 42.1 bits (21), Expect = 1.5 Identities = 36/41 (87%) Strand = Plus / Plus Query: 311 aaggttgcaccacagatttcctcctcatctgcaggcacagc 351 |||||||| || ||||||||||| |||| ||||||||||| Sbjct: 167 aaggttgcgccccagatttcctcatcattagcaggcacagc 207
>gb|DQ107178.1| Astragalus lonchocarpus clone 19 aluminum-induced protein-like gene, partial sequence Length = 338 Score = 42.1 bits (21), Expect = 1.5 Identities = 36/41 (87%) Strand = Plus / Plus Query: 311 aaggttgcaccacagatttcctcctcatctgcaggcacagc 351 |||||||| || ||||||||||| |||| ||||||||||| Sbjct: 172 aaggttgcgccccagatttcctcatcattagcaggcacagc 212
>gb|DQ107177.1| Astragalus lonchocarpus clone 24 aluminum-induced protein-like gene, partial sequence Length = 335 Score = 42.1 bits (21), Expect = 1.5 Identities = 36/41 (87%) Strand = Plus / Plus Query: 311 aaggttgcaccacagatttcctcctcatctgcaggcacagc 351 |||||||| || ||||||||||| |||| ||||||||||| Sbjct: 172 aaggttgcgccccagatttcctcatcattagcaggcacagc 212
>gb|DQ107176.1| Astragalus ceramicus clone 6 aluminum-induced protein-like gene, partial sequence Length = 334 Score = 42.1 bits (21), Expect = 1.5 Identities = 36/41 (87%) Strand = Plus / Plus Query: 311 aaggttgcaccacagatttcctcctcatctgcaggcacagc 351 |||||||| || ||||||||||| |||| ||||||||||| Sbjct: 172 aaggttgcgccccagatttcctcatcattagcaggcacagc 212
>gb|DQ107175.1| Astragalus ceramicus clone 3 aluminum-induced protein-like gene, partial sequence Length = 334 Score = 42.1 bits (21), Expect = 1.5 Identities = 36/41 (87%) Strand = Plus / Plus Query: 311 aaggttgcaccacagatttcctcctcatctgcaggcacagc 351 |||||||| || ||||||||||| |||| ||||||||||| Sbjct: 172 aaggttgcgccccagatttcctcatcattagcaggcacagc 212
>gb|DQ107174.1| Astragalus ceramicus clone 2 aluminum-induced protein-like gene, partial sequence Length = 335 Score = 42.1 bits (21), Expect = 1.5 Identities = 36/41 (87%) Strand = Plus / Plus Query: 311 aaggttgcaccacagatttcctcctcatctgcaggcacagc 351 |||||||| || ||||||||||| |||| ||||||||||| Sbjct: 172 aaggttgcgccccagatttcctcatcattagcaggcacagc 212
>gb|DQ107171.1| Astragalus tetrapterus clone 21 aluminum-induced protein-like gene, partial sequence Length = 336 Score = 42.1 bits (21), Expect = 1.5 Identities = 36/41 (87%) Strand = Plus / Plus Query: 311 aaggttgcaccacagatttcctcctcatctgcaggcacagc 351 |||||||| || ||||||||||| |||| ||||||||||| Sbjct: 172 aaggttgcgccccagatttcctcatcattagcaggcacagc 212
>gb|DQ107170.1| Astragalus tetrapterus clone 20 aluminum-induced protein-like gene, partial sequence Length = 337 Score = 42.1 bits (21), Expect = 1.5 Identities = 36/41 (87%) Strand = Plus / Plus Query: 311 aaggttgcaccacagatttcctcctcatctgcaggcacagc 351 |||||||| || ||||||||||| |||| ||||||||||| Sbjct: 172 aaggttgcgccccagatttcctcatcattagcaggcacagc 212
>gb|AC129093.34| Mus musculus strain C57BL/6J clone rp23-198m10 map 19, complete sequence Length = 190697 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 112 agagctagagatacagatga 131 |||||||||||||||||||| Sbjct: 35605 agagctagagatacagatga 35586
>gb|AF009660.1|HSTCRBK17 Homo sapiens T cell receptor beta locus, TCRBV7S3A2 to TCRBV12S2 region Length = 62262 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 317 gcaccacagatttcctcctcatct 340 |||||||||||||| ||||||||| Sbjct: 58705 gcaccacagatttcttcctcatct 58682
>gb|AC103380.13| Mus musculus chromosome 1, clone RP24-263A16, complete sequence Length = 173136 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 112 agagctagagatacagatga 131 |||||||||||||||||||| Sbjct: 16259 agagctagagatacagatga 16278
>ref|NG_001333.1| Homo sapiens T cell receptor beta locus (TRB@) on chromosome 7 Length = 684973 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 317 gcaccacagatttcctcctcatct 340 |||||||||||||| ||||||||| Sbjct: 218594 gcaccacagatttcttcctcatct 218571
>gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, complete sequence Length = 6365727 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 15 ttcttttagatggagaaggaaagc 38 |||||| ||||||||||||||||| Sbjct: 4088128 ttctttaagatggagaaggaaagc 4088151
>gb|AC021016.5| Homo sapiens BAC clone RP11-378A13 from 2, complete sequence Length = 191755 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 205 caccaccaccacctacacac 224 |||||||||||||||||||| Sbjct: 153105 caccaccaccacctacacac 153124
>gb|AC117662.13| Mus musculus chromosome 16, clone RP23-351D19, complete sequence Length = 293822 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 205 caccaccaccacctacacac 224 |||||||||||||||||||| Sbjct: 167383 caccaccaccacctacacac 167364
>emb|CT010426.3| Mouse DNA sequence from clone RP23-17A17 on chromosome 17, complete sequence Length = 221525 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 205 caccaccaccacctacacac 224 |||||||||||||||||||| Sbjct: 94535 caccaccaccacctacacac 94554
>gb|AC122815.3| Mus musculus BAC clone RP23-234O3 from chromosome 2, complete sequence Length = 176452 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 29 gaaggaaagcttatttgcta 48 |||||||||||||||||||| Sbjct: 105241 gaaggaaagcttatttgcta 105260
>gb|AC131722.4| Mus musculus BAC clone RP23-143M5 from chromosome 9, complete sequence Length = 228144 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 113 gagctagagatacagatgat 132 |||||||||||||||||||| Sbjct: 164138 gagctagagatacagatgat 164119
>gb|AC118608.7| Mus musculus chromosome 17, clone RP23-478J10, complete sequence Length = 196566 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 205 caccaccaccacctacacac 224 |||||||||||||||||||| Sbjct: 19345 caccaccaccacctacacac 19364
>emb|AL032821.2|HS55C23 Human DNA sequence from clone RP1-55C23 on chromosome 6q22.3-23.3 Contains a pseudogene similar to part of hepatic leukemia factor (HLF), the VNN1 gene for vanin 1, a cyclin G (CCNG1) pseudogene, the VVN3 gene for vanin 3, the VNN2 gene for vanin 2, a novel gene, and the 3' end of the gene for a novel protein, complete sequence Length = 143563 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 acagatgatcagattcacaa 143 |||||||||||||||||||| Sbjct: 106976 acagatgatcagattcacaa 106957
>gb|AC153359.4| Mus musculus BAC clone RP23-477I1 from chromosome 9, complete sequence Length = 195269 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 113 gagctagagatacagatgat 132 |||||||||||||||||||| Sbjct: 168771 gagctagagatacagatgat 168790
>gb|AC130814.3| Homo sapiens BAC clone RP11-599B8 from 2, complete sequence Length = 129660 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 aggaaagcttatttgctact 50 |||||||||||||||||||| Sbjct: 7147 aggaaagcttatttgctact 7128
>gb|AF229163.1|AF229163 Homo sapiens natural resistance-associated macrophage protein 1 (SLC11A1) gene, complete cds, alternatively spliced; and nuclear LIM interactor-interacting factor (NLI-IF) gene, complete cds Length = 32198 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 205 caccaccaccacctacacac 224 |||||||||||||||||||| Sbjct: 31094 caccaccaccacctacacac 31113
>gb|AC092594.2| Homo sapiens BAC clone RP11-78J22 from 2, complete sequence Length = 159471 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 aggaaagcttatttgctact 50 |||||||||||||||||||| Sbjct: 928 aggaaagcttatttgctact 909
>dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome Length = 6413771 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 15 ttcttttagatggagaaggaaagc 38 |||||| ||||||||||||||||| Sbjct: 5274094 ttctttaagatggagaaggaaagc 5274071
>gb|AC151833.3| Mus musculus BAC clone RP23-374P15 from 14, complete sequence Length = 197918 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 29 gaaggaaagcttatttgcta 48 |||||||||||||||||||| Sbjct: 37432 gaaggaaagcttatttgcta 37451
>gb|AC138308.3| Mus musculus BAC clone RP23-286G16 from 14, complete sequence Length = 148679 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 29 gaaggaaagcttatttgcta 48 |||||||||||||||||||| Sbjct: 111508 gaaggaaagcttatttgcta 111527
>gb|AC122846.4| Mus musculus BAC clone RP23-156M18 from 19, complete sequence Length = 217949 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 29 gaaggaaagcttatttgcta 48 |||||||||||||||||||| Sbjct: 134693 gaaggaaagcttatttgcta 134674
>gb|U66059.1| Human germline T-cell receptor beta chain Dopamine-beta-hydroxylase-like, TRY1, TRY2, TRY3, TCRBV27S1P, TCRBV22S1A2N1T, TCRBV9S1A1T, TCRBV7S1A1N2T, TCRBV5S1A1T, TCRBV13S3, TCRBV6S7P, TCRBV7S3A2T, TCRBV13S2A1T, TCRBV9S2A2PT, TCRBV7S2A1N4T, TCRBV13S9/13S2A1T, TCRBV6S5A1N1, TCRBV30S1P, TCRBV31S1, TCRBV13S5, TCRBV6S1A1N1, TCRBV32S1P, TCRBV5S5P, TCRBV1S1A1N1, TCRBV12S2A1T, TCRBV21S1, TCRBV8S4P, TCRBV12S3, TCRBV21S3A2N2T, TCRBV8S5P, TCRBV13S1 genes from bases 1 to 267156 (section 1 of 3) Length = 267156 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 317 gcaccacagatttcctcctcatct 340 |||||||||||||| ||||||||| Sbjct: 218594 gcaccacagatttcttcctcatct 218571
>gb|AC099701.4| Mus musculus chromosome 7, clone RP23-184F6, complete sequence Length = 226167 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 23 gatggagaaggaaagcttat 42 |||||||||||||||||||| Sbjct: 171373 gatggagaaggaaagcttat 171392
>emb|AL772389.10| Mouse DNA sequence from clone RP23-106D7 on chromosome 2, complete sequence Length = 211326 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 29 gaaggaaagcttatttgcta 48 |||||||||||||||||||| Sbjct: 22595 gaaggaaagcttatttgcta 22576
>gb|AC138106.9| Mus musculus chromosome 1, clone RP23-278C19, complete sequence Length = 173026 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 112 agagctagagatacagatga 131 |||||||||||||||||||| Sbjct: 103588 agagctagagatacagatga 103607 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,028,177 Number of Sequences: 3902068 Number of extensions: 4028177 Number of successful extensions: 91142 Number of sequences better than 10.0: 60 Number of HSP's better than 10.0 without gapping: 60 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 90939 Number of HSP's gapped (non-prelim): 200 length of query: 439 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 417 effective length of database: 17,147,199,772 effective search space: 7150382304924 effective search space used: 7150382304924 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)