ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart06b01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CYB_PTEQU (Q9B0Y1) Cytochrome b 29 4.1
2CYB_PTEPR (Q9B365) Cytochrome b 29 4.1
3CYB_PTEMA (Q9B106) Cytochrome b 29 4.1
4CYB_PTEGY (Q9B0S2) Cytochrome b 29 4.1
5CYB_PTEDV (Q9B1N0) Cytochrome b 29 4.1
6DNJ5_CAEEL (Q09446) DnaJ homolog dnj-5 (DnaJ domain protein 5) 28 9.0

>CYB_PTEQU (Q9B0Y1) Cytochrome b|
          Length = 379

 Score = 28.9 bits (63), Expect = 4.1
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 68  TTDSHPFGLPPDPSMVPYVP 9
           T  S+P G+P DP MVP+ P
Sbjct: 203 TGSSNPTGIPSDPDMVPFHP 222



to top

>CYB_PTEPR (Q9B365) Cytochrome b|
          Length = 379

 Score = 28.9 bits (63), Expect = 4.1
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 68  TTDSHPFGLPPDPSMVPYVP 9
           T  S+P G+P DP MVP+ P
Sbjct: 203 TGSSNPTGIPSDPDMVPFHP 222



to top

>CYB_PTEMA (Q9B106) Cytochrome b|
          Length = 379

 Score = 28.9 bits (63), Expect = 4.1
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 68  TTDSHPFGLPPDPSMVPYVP 9
           T  S+P G+P DP MVP+ P
Sbjct: 203 TGSSNPTGIPSDPDMVPFHP 222



to top

>CYB_PTEGY (Q9B0S2) Cytochrome b|
          Length = 379

 Score = 28.9 bits (63), Expect = 4.1
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 68  TTDSHPFGLPPDPSMVPYVP 9
           T  S+P G+P DP MVP+ P
Sbjct: 203 TGSSNPTGIPSDPDMVPFHP 222



to top

>CYB_PTEDV (Q9B1N0) Cytochrome b|
          Length = 379

 Score = 28.9 bits (63), Expect = 4.1
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 68  TTDSHPFGLPPDPSMVPYVP 9
           T  S+P G+P DP MVP+ P
Sbjct: 203 TGSSNPTGIPSDPDMVPFHP 222



to top

>DNJ5_CAEEL (Q09446) DnaJ homolog dnj-5 (DnaJ domain protein 5)|
          Length = 915

 Score = 27.7 bits (60), Expect = 9.0
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = -3

Query: 146 HPASKKGLWPHAFHFHNFNPETENQVTTDSHPFGLPPDPSMVPYVPSR 3
           HP+S+   + H  H H       + V   +H FG PP P +  + P+R
Sbjct: 138 HPSSQVHHFHHNLHHHTHT----HNVQVQNHYFGAPP-PGLESFGPTR 180


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,386,443
Number of Sequences: 219361
Number of extensions: 509930
Number of successful extensions: 1947
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1946
length of database: 80,573,946
effective HSP length: 26
effective length of database: 74,870,560
effective search space used: 1796893440
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top