ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart06a09 |
|---|---|
| Clone Library Name | barley_pub |
>DROS_DROSI (Q6XMH8) Drosocin precursor| Length = 64 Score = 32.3 bits (72), Expect = 0.28 Identities = 16/36 (44%), Positives = 21/36 (58%) Frame = -2 Query: 287 YSPRPSRHDRPT*PRPAPIQTLPVHNAASLIRPPPV 180 YSPRP+ H RP R + + H A + IRPPP+ Sbjct: 27 YSPRPTSHPRPIRVRREAL-AIEDHLAQAAIRPPPI 61
>DROS_DROME (P36193) Drosocin precursor| Length = 64 Score = 32.3 bits (72), Expect = 0.28 Identities = 16/36 (44%), Positives = 21/36 (58%) Frame = -2 Query: 287 YSPRPSRHDRPT*PRPAPIQTLPVHNAASLIRPPPV 180 YSPRP+ H RP R + + H A + IRPPP+ Sbjct: 27 YSPRPTSHPRPIRVRREAL-AIEDHLAQAAIRPPPI 61
>AMYG_CANAL (O74254) Glucoamylase 1 precursor (EC 3.2.1.3) (Glucan| 1,4-alpha-glucosidase) (1,4-alpha-D-glucan glucohydrolase) Length = 946 Score = 32.3 bits (72), Expect = 0.28 Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 3/64 (4%) Frame = +1 Query: 112 HIDGTHA*LSIRTHSDWS-QYDIHTGGGLISDAALWTGSV*IGAGRGQ--VGRSCLDGRG 282 H THA TH+D + +YDIH GLI + A++ + I + +GRS G G Sbjct: 560 HDLATHAISPNATHADGTVEYDIHNIYGLIQERAIYEALLEIHPNKRPFIIGRSSFAGSG 619 Query: 283 LYDG 294 Y G Sbjct: 620 KYMG 623
>PDC6I_HUMAN (Q8WUM4) Programmed cell death 6-interacting protein| (PDCD6-interacting protein) (ALG-2-interacting protein 1) (Hp95) Length = 868 Score = 31.6 bits (70), Expect = 0.48 Identities = 16/38 (42%), Positives = 20/38 (52%) Frame = -2 Query: 296 TPSYSPRPSRHDRPT*PRPAPIQTLPVHNAASLIRPPP 183 TP+Y P+ PT P PAP +T+P RPPP Sbjct: 724 TPAYQSSPAGGHAPTPPTPAP-RTMPPTKPQPPARPPP 760
>ATX2_MOUSE (O70305) Ataxin-2 (Spinocerebellar ataxia type 2 protein homolog)| Length = 1285 Score = 31.2 bits (69), Expect = 0.63 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 3/45 (6%) Frame = -2 Query: 305 PSWTPSYSPRPSRHDRPT*---PRPAPIQTLPVHNAASLIRPPPV 180 PS TP+ SPRP P+ +PAP+ T PV A +++ P PV Sbjct: 902 PSTTPT-SPRPQAQPSPSMVGHQQPAPVYTQPVCFAPNMMYPVPV 945
>EXTN_TOBAC (P13983) Extensin precursor (Cell wall hydroxyproline-rich| glycoprotein) Length = 620 Score = 30.8 bits (68), Expect = 0.82 Identities = 15/42 (35%), Positives = 22/42 (52%) Frame = -2 Query: 305 PSWTPSYSPRPSRHDRPT*PRPAPIQTLPVHNAASLIRPPPV 180 P+ TP++SP P + P P P LP+ ++ PPPV Sbjct: 311 PTPTPTFSPPPPAYSPPPTYSPPPPTYLPLPSSPIYSPPPPV 352 Score = 27.7 bits (60), Expect = 6.9 Identities = 11/31 (35%), Positives = 17/31 (54%) Frame = -2 Query: 275 PSRHDRPT*PRPAPIQTLPVHNAASLIRPPP 183 PSRH P P A P+++ + ++PPP Sbjct: 172 PSRHGHPPPPTYAQPPPTPIYSPSPQVQPPP 202
>IF1C_SOYBN (Q94KR7) Translation initiation factor IF-1, chloroplast precursor| Length = 138 Score = 30.4 bits (67), Expect = 1.1 Identities = 13/39 (33%), Positives = 19/39 (48%) Frame = -2 Query: 296 TPSYSPRPSRHDRPT*PRPAPIQTLPVHNAASLIRPPPV 180 TP PR H P+ + +P+ P H S + PPP+ Sbjct: 7 TPILHPRYCHHPTPSCTQFSPLALPPFHRTLSFLAPPPL 45
>NOTC2_MOUSE (O35516) Neurogenic locus notch homolog protein 2 precursor (Notch 2)| (Motch B) [Contains: Notch 2 extracellular truncation; Notch 2 intracellular domain] Length = 2470 Score = 30.4 bits (67), Expect = 1.1 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%) Frame = +2 Query: 5 LQLSCFV*SALQHGADQNHTCRL--FCLSAGRYHYCTC 112 L +SC +ALQ G H C+ C++AG H+C C Sbjct: 1099 LNVSCKA-AALQKGVPVEHLCQHSGICINAGNTHHCQC 1135
>NOTC2_RAT (Q9QW30) Neurogenic locus notch homolog protein 2 precursor (Notch 2)| [Contains: Notch 2 extracellular truncation; Notch 2 intracellular domain] Length = 2471 Score = 30.4 bits (67), Expect = 1.1 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%) Frame = +2 Query: 5 LQLSCFV*SALQHGADQNHTCRL--FCLSAGRYHYCTC 112 L +SC +ALQ G H C+ C++AG H+C C Sbjct: 1101 LNVSCKA-AALQKGVPVEHLCQHSGICINAGNTHHCQC 1137
>IF2_STRCO (Q8CJQ8) Translation initiation factor IF-2| Length = 1033 Score = 30.0 bits (66), Expect = 1.4 Identities = 16/48 (33%), Positives = 20/48 (41%) Frame = -2 Query: 377 RSGAARPXXXXXXXXXXXXXXX*GPSWTPSYSPRPSRHDRPT*PRPAP 234 R+ A RP P+ PS PRP+ +P PRPAP Sbjct: 93 RAAAPRPSAAPKAPAAQQPAAPSAPAPAPSQGPRPTPGPKPA-PRPAP 139
>SC6A5_MOUSE (Q761V0) Sodium- and chloride-dependent glycine transporter 2| (GlyT2) (GlyT-2) (Solute carrier family 6 member 5) Length = 799 Score = 30.0 bits (66), Expect = 1.4 Identities = 13/32 (40%), Positives = 17/32 (53%) Frame = -2 Query: 275 PSRHDRPT*PRPAPIQTLPVHNAASLIRPPPV 180 P D P PR +P Q LP A+ ++PP V Sbjct: 22 PGHRDSPRAPRTSPEQDLPAEAPAATVQPPRV 53
>EXTN_SORBI (P24152) Extensin precursor (Proline-rich glycoprotein)| Length = 283 Score = 29.6 bits (65), Expect = 1.8 Identities = 13/37 (35%), Positives = 17/37 (45%) Frame = -2 Query: 293 PSYSPRPSRHDRPT*PRPAPIQTLPVHNAASLIRPPP 183 P+Y+P P P P+P P P S + PPP Sbjct: 72 PTYTPSPKPTPPPATPKPTPPTYTPSPKPKSPVYPPP 108
>ATX2_HUMAN (Q99700) Ataxin-2 (Spinocerebellar ataxia type 2 protein)| (Trinucleotide repeat-containing gene 13 protein) Length = 1312 Score = 29.6 bits (65), Expect = 1.8 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 3/45 (6%) Frame = -2 Query: 305 PSWTPSYSPRPSRHDRPT*---PRPAPIQTLPVHNAASLIRPPPV 180 PS TP+ SPRP P+ +P P+ T PV A +++ P PV Sbjct: 930 PSTTPT-SPRPQAQPSPSMVGHQQPTPVYTQPVCFAPNMMYPVPV 973
>PGCB_BOVIN (Q28062) Brevican core protein precursor| Length = 912 Score = 29.6 bits (65), Expect = 1.8 Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 5/42 (11%) Frame = -2 Query: 293 PSYSPRPSRHDRPT*PRPA-----PIQTLPVHNAASLIRPPP 183 P SP P +D P PRP P +TLP +L PPP Sbjct: 518 PGVSPPP--YDEPEAPRPPRVLGPPTKTLPTPREGNLASPPP 557
>ICP4_HHV11 (P08392) Trans-acting transcriptional protein ICP4 (Transcriptional| activator IE175) (Alpha-4 protein) Length = 1298 Score = 29.6 bits (65), Expect = 1.8 Identities = 15/37 (40%), Positives = 18/37 (48%) Frame = -2 Query: 281 PRPSRHDRPT*PRPAPIQTLPVHNAASLIRPPPVCMS 171 P P+ P P PAP Q AA+ RP PV +S Sbjct: 765 PAPAPPSTPPGPEPAPAQPAAPRAAAAQARPRPVAVS 801
>PROK2_MOUSE (Q9QXU7) Prokineticin-2 precursor (PK2) (Protein Bv8 homolog)| Length = 128 Score = 29.3 bits (64), Expect = 2.4 Identities = 13/32 (40%), Positives = 17/32 (53%) Frame = +1 Query: 172 DIHTGGGLISDAALWTGSV*IGAGRGQVGRSC 267 D GGG+ ++W S+ I GQVG SC Sbjct: 36 DSQCGGGMCCAVSIWVKSIRICTPMGQVGDSC 67
>SC6A5_RAT (P58295) Sodium- and chloride-dependent glycine transporter 2| (GlyT2) (GlyT-2) (Solute carrier family 6 member 5) Length = 799 Score = 29.3 bits (64), Expect = 2.4 Identities = 13/32 (40%), Positives = 17/32 (53%) Frame = -2 Query: 275 PSRHDRPT*PRPAPIQTLPVHNAASLIRPPPV 180 P D P PR +P Q LP A+ ++PP V Sbjct: 22 PGHRDSPRAPRTSPEQDLPAAAPAAAVQPPRV 53
>PROK2_RAT (Q8R413) Prokineticin-2 precursor (PK2)| Length = 107 Score = 29.3 bits (64), Expect = 2.4 Identities = 13/32 (40%), Positives = 17/32 (53%) Frame = +1 Query: 172 DIHTGGGLISDAALWTGSV*IGAGRGQVGRSC 267 D GGG+ ++W S+ I GQVG SC Sbjct: 36 DSQCGGGMCCAVSIWVKSIRICTPMGQVGDSC 67
>ITCH_MOUSE (Q8C863) Itchy E3 ubiquitin protein ligase (EC 6.3.2.-)| Length = 864 Score = 28.9 bits (63), Expect = 3.1 Identities = 15/31 (48%), Positives = 17/31 (54%) Frame = -2 Query: 293 PSYSPRPSRHDRPT*PRPAPIQTLPVHNAAS 201 PS PRPSR PT RPA + P N+ S Sbjct: 209 PSRPPRPSRPPPPTPRRPASVNGSPSTNSDS 239
>GUNH_CLOTM (P16218) Endoglucanase H precursor (EC 3.2.1.4) (EGH)| (Endo-1,4-beta-glucanase) (Cellulase H) Length = 900 Score = 28.9 bits (63), Expect = 3.1 Identities = 13/24 (54%), Positives = 14/24 (58%) Frame = -2 Query: 305 PSWTPSYSPRPSRHDRPT*PRPAP 234 P PSYSP+PS RPT P P Sbjct: 631 PGTYPSYSPKPSPTPRPTKPPVTP 654
>ILVD_BACSK (Q5WEM9) Dihydroxy-acid dehydratase (EC 4.2.1.9) (DAD)| Length = 554 Score = 28.5 bits (62), Expect = 4.1 Identities = 17/48 (35%), Positives = 27/48 (56%) Frame = +1 Query: 154 SDWSQYDIHTGGGLISDAALWTGSV*IGAGRGQVGRSCLDGRGLYDGV 297 SD+S D+H GG+ AA+ + +GA +G R + G+ LY+ V Sbjct: 308 SDYSMDDVHKAGGV---AAIMKELIEMGAVKGD--RITITGKSLYENV 350
>ZAP70_HUMAN (P43403) Tyrosine-protein kinase ZAP-70 (EC 2.7.10.2) (70 kDa| zeta-associated protein) (Syk-related tyrosine kinase) Length = 619 Score = 28.1 bits (61), Expect = 5.3 Identities = 16/53 (30%), Positives = 20/53 (37%) Frame = -2 Query: 383 SRRSGAARPXXXXXXXXXXXXXXX*GPSWTPSYSPRPSRHDRPT*PRPAPIQT 225 S SGAA P + Y+P P+R P PRP P+ T Sbjct: 260 SNASGAAAPTLPAHPSTLTHPQRRIDTLNSDGYTPEPARITSPDKPRPMPMDT 312
>MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, tracheobronchial)| (High molecular weight salivary mucin MG1) (Sublingual gland mucin) Length = 5703 Score = 28.1 bits (61), Expect = 5.3 Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 4/61 (6%) Frame = -2 Query: 260 RPT*PRPAPIQTLPVHNAASLIRPPPVCM----SYCDQSE*VLMLNYACVPSICMYSSGT 93 RP P +T+ V N + + PVC S C Q E + C P +C Y+ Sbjct: 5411 RPRAENPCCPETVCVCNTTTCPQSLPVCPPGQESICTQEEGDCCPTFRCRPQLCSYNGTF 5470 Query: 92 Y 90 Y Sbjct: 5471 Y 5471
>MUTL_BACSU (P49850) DNA mismatch repair protein mutL| Length = 627 Score = 27.7 bits (60), Expect = 6.9 Identities = 12/25 (48%), Positives = 15/25 (60%) Frame = -2 Query: 98 GTYQLTGRINGMYDFDQHRVAKQIK 24 GTY L NG+Y DQH ++IK Sbjct: 447 GTYILAQNENGLYIIDQHAAQERIK 471
>K1543_HUMAN (Q9P1Y5) Protein KIAA1543| Length = 1249 Score = 27.7 bits (60), Expect = 6.9 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 2/38 (5%) Frame = -2 Query: 305 PSWTPSYSPRPSRHDRPT*PRPAPIQTL--PVHNAASL 198 P PS SPR +H RP R AP+ + P H+ SL Sbjct: 770 PGPGPSQSPRSPKHTRPAELRLAPLTRVLTPPHDVDSL 807
>CNG1_CHICK (Q90805) Cyclic nucleotide-gated channel, cone photoreceptor,| subunit alpha (CNG channel 1) (CNG-1) Length = 735 Score = 27.7 bits (60), Expect = 6.9 Identities = 8/22 (36%), Positives = 14/22 (63%) Frame = +2 Query: 206 LHYGQVASELELDAVKWVDHAW 271 +H+ +V +LE +KW D+ W Sbjct: 466 MHFRKVTKDLEARVIKWFDYLW 487
>SAPS1_HUMAN (Q9UPN7) SAPS domain family member 1| Length = 881 Score = 27.7 bits (60), Expect = 6.9 Identities = 12/22 (54%), Positives = 15/22 (68%) Frame = -2 Query: 308 GPSWTPSYSPRPSRHDRPT*PR 243 GPSWT ++ P P+ D PT PR Sbjct: 709 GPSWTATFDPVPT--DAPTSPR 728
>SNF5_YEAST (P18480) Transcription regulatory protein SNF5 (SWI/SNF complex| component SNF5) (Transcription factor TYE4) Length = 905 Score = 27.7 bits (60), Expect = 6.9 Identities = 13/34 (38%), Positives = 17/34 (50%) Frame = -2 Query: 284 SPRPSRHDRPT*PRPAPIQTLPVHNAASLIRPPP 183 SP P H P P P Q+ P+ N ++ PPP Sbjct: 71 SPPPQTHQSPP---PPPQQSQPIANQSATSTPPP 101
>TARSH_HUMAN (Q7Z7G0) Target of Nesh-SH3 precursor (Tarsh) (Nesh-binding| protein) (NeshBP) (ABI gene family member 3-binding protein) Length = 1075 Score = 27.7 bits (60), Expect = 6.9 Identities = 16/64 (25%), Positives = 26/64 (40%) Frame = -2 Query: 305 PSWTPSYSPRPSRHDRPT*PRPAPIQTLPVHNAASLIRPPPVCMSYCDQSE*VLMLNYAC 126 P TP P+P RP P+ P+ +P A P +SY + ++L + Sbjct: 534 PKQTPRAPPKPKTSPRPRIPQTQPVPKVPQRVTAKPKTSPSPEVSYTTPAPKDVLLPHKP 593 Query: 125 VPSI 114 P + Sbjct: 594 YPEV 597
>PHC3_MOUSE (Q8CHP6) Polyhomeotic-like protein 3| Length = 981 Score = 27.7 bits (60), Expect = 6.9 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 3/45 (6%) Frame = -2 Query: 296 TPSYSPRPSRHDRPT*PR---PAPIQTLPVHNAASLIRPPPVCMS 171 +PS P PS+H P PAP P H + PPP+ +S Sbjct: 338 SPSQDPPPSQHCIPLPNHGLSPAPSNAQPQHCSPVQSHPPPLTVS 382
>PUR5_PROMP (Q7UZR7) Phosphoribosylformylglycinamidine cyclo-ligase (EC| 6.3.3.1) (AIRS) (Phosphoribosyl-aminoimidazole synthetase) (AIR synthase) Length = 347 Score = 27.3 bits (59), Expect = 9.1 Identities = 15/54 (27%), Positives = 26/54 (48%) Frame = +1 Query: 43 RC*SKSYMPFILPVSW*VPLLYMHIDGTHA*LSIRTHSDWSQYDIHTGGGLISD 204 RC S ++P+I SW +P+L+ + I W+ +++ G LI D Sbjct: 256 RCMSSDFIPYIDKKSWKIPVLFEFLKDVG---QIPEKDFWNTFNLGVGFCLIID 306 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,852,408 Number of Sequences: 219361 Number of extensions: 1138319 Number of successful extensions: 3416 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 3239 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3404 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 1380984984 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
