ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart06a02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 163 4e-37
2dbj|AP005445.3| Oryza sativa (japonica cultivar-group) genomic D... 163 4e-37
3dbj|AP003771.2| Oryza sativa (japonica cultivar-group) genomic D... 163 4e-37
4gb|AC022260.6| Homo sapiens chromosome 8, clone RP11-426C8, comp... 46 0.060
5ref|XM_473793.1| Oryza sativa (japonica cultivar-group), predic... 40 3.7
6ref|XM_748589.1| Aspergillus fumigatus Af293 hypothetical protei... 40 3.7
7gb|AC084033.33| Homo sapiens 12q BAC RP11-58A17 (Roswell Park Ca... 40 3.7
8emb|AL939123.1|SCO939123 Streptomyces coelicolor A3(2) complete ... 40 3.7
9emb|AL662996.3|OSJN00198 Oryza sativa genomic DNA, chromosome 4,... 40 3.7
10ref|XM_680962.1| PREDICTED: Danio rerio similar to Glutamyl amin... 40 3.7
11dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.7
12dbj|AK059203.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.7
13emb|CT025771.7| Zebrafish DNA sequence from clone DKEY-20I10 in ... 40 3.7
14gb|AC140934.1| Gallus gallus BAC clone TAM31-90J8 from chromosom... 40 3.7 
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  163 bits (82), Expect = 4e-37
 Identities = 124/138 (89%)
 Strand = Plus / Minus

                                                                            
Query: 141      ccgatggggatgatgcactcggcggggaacccgtgggggtaccgcttccggtcggcgcaa 200
                ||||||||||||||||||||||||||||| | ||| ||| | ||||||| ||||||||| 
Sbjct: 28755587 ccgatggggatgatgcactcggcggggaaacggtgcgggaatcgcttcctgtcggcgcag 28755528

                                                                            
Query: 201      taatcgtaggtcatgtagttcatgcgcacccagttgagcgtcatccagctccaccagtcc 260
                || ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 28755527 tagtcgtaggccatgtagttcatccgcacccagttgagcgtcatccagctccaccagtcc 28755468

                                  
Query: 261      agccgctgccccatccac 278
                | || | ||| |||||||
Sbjct: 28755467 atcctccgcctcatccac 28755450
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>dbj|AP005445.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0028E05
          Length = 157631

 Score =  163 bits (82), Expect = 4e-37
 Identities = 124/138 (89%)
 Strand = Plus / Minus

                                                                         
Query: 141   ccgatggggatgatgcactcggcggggaacccgtgggggtaccgcttccggtcggcgcaa 200
             ||||||||||||||||||||||||||||| | ||| ||| | ||||||| ||||||||| 
Sbjct: 63362 ccgatggggatgatgcactcggcggggaaacggtgcgggaatcgcttcctgtcggcgcag 63303

                                                                         
Query: 201   taatcgtaggtcatgtagttcatgcgcacccagttgagcgtcatccagctccaccagtcc 260
             || ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 63302 tagtcgtaggccatgtagttcatccgcacccagttgagcgtcatccagctccaccagtcc 63243

                               
Query: 261   agccgctgccccatccac 278
             | || | ||| |||||||
Sbjct: 63242 atcctccgcctcatccac 63225
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>dbj|AP003771.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0622F03
          Length = 170064

 Score =  163 bits (82), Expect = 4e-37
 Identities = 124/138 (89%)
 Strand = Plus / Minus

                                                                          
Query: 141    ccgatggggatgatgcactcggcggggaacccgtgggggtaccgcttccggtcggcgcaa 200
              ||||||||||||||||||||||||||||| | ||| ||| | ||||||| ||||||||| 
Sbjct: 156153 ccgatggggatgatgcactcggcggggaaacggtgcgggaatcgcttcctgtcggcgcag 156094

                                                                          
Query: 201    taatcgtaggtcatgtagttcatgcgcacccagttgagcgtcatccagctccaccagtcc 260
              || ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 156093 tagtcgtaggccatgtagttcatccgcacccagttgagcgtcatccagctccaccagtcc 156034

                                
Query: 261    agccgctgccccatccac 278
              | || | ||| |||||||
Sbjct: 156033 atcctccgcctcatccac 156016
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>gb|AC022260.6| Homo sapiens chromosome 8, clone RP11-426C8, complete sequence
          Length = 168515

 Score = 46.1 bits (23), Expect = 0.060
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 1     cacagacaaaacaaaagctctttacat 27
             |||||||||||||||||||| ||||||
Sbjct: 48386 cacagacaaaacaaaagctccttacat 48360
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>ref|XM_473793.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 966

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 190 ggtcggcgcaataatcgtaggtcatgtagttc 221
           ||||| |||| ||||||||| |||||||||||
Sbjct: 898 ggtcgccgcagtaatcgtagatcatgtagttc 867
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>ref|XM_748589.1| Aspergillus fumigatus Af293 hypothetical protein (Afu5g09570)
           partial mRNA
          Length = 879

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 136 tcctcccgatggggatgatg 155
           ||||||||||||||||||||
Sbjct: 309 tcctcccgatggggatgatg 328
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>gb|AC084033.33| Homo sapiens 12q BAC RP11-58A17 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 162023

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 5      gacaaaacaaaagctcttta 24
              ||||||||||||||||||||
Sbjct: 133943 gacaaaacaaaagctcttta 133924
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>emb|AL939123.1|SCO939123 Streptomyces coelicolor A3(2) complete genome; segment 20/29
          Length = 300100

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 165    gggaacccgtgggggtaccg 184
              ||||||||||||||||||||
Sbjct: 281430 gggaacccgtgggggtaccg 281411
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>emb|AL662996.3|OSJN00198 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0015N08,
             complete sequence
          Length = 129037

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 190   ggtcggcgcaataatcgtaggtcatgtagttc 221
             ||||| |||| ||||||||| |||||||||||
Sbjct: 30341 ggtcgccgcagtaatcgtagatcatgtagttc 30372
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>ref|XM_680962.1| PREDICTED: Danio rerio similar to Glutamyl aminopeptidase (EAP)
            (Aminopeptidase A) (APA) (Differentiation antigen gp160)
            (LOC557818), mRNA
          Length = 3083

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 229  cccagttgagcgtcatccag 248
            ||||||||||||||||||||
Sbjct: 2611 cccagttgagcgtcatccag 2592
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                                
Query: 190      ggtcggcgcaataatcgtaggtcatgtagttc 221
                ||||| |||| ||||||||| |||||||||||
Sbjct: 30554633 ggtcgccgcagtaatcgtagatcatgtagttc 30554664
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>dbj|AK059203.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-024-A11, full
           insert sequence
          Length = 1234

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 190 ggtcggcgcaataatcgtaggtcatgtagttc 221
           ||||| |||| ||||||||| |||||||||||
Sbjct: 966 ggtcgccgcagtaatcgtagatcatgtagttc 935
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>emb|CT025771.7| Zebrafish DNA sequence from clone DKEY-20I10 in linkage group 13,
            complete sequence
          Length = 190607

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 229  cccagttgagcgtcatccag 248
            ||||||||||||||||||||
Sbjct: 6452 cccagttgagcgtcatccag 6433
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>gb|AC140934.1| Gallus gallus BAC clone TAM31-90J8 from chromosome ul, complete
             sequence
          Length = 97842

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 1     cacagacaaaacaaaagctcttta 24
             ||||||||||| ||||||||||||
Sbjct: 88869 cacagacaaaagaaaagctcttta 88892


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,427,824
Number of Sequences: 3902068
Number of extensions: 2427824
Number of successful extensions: 33052
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 33007
Number of HSP's gapped (non-prelim): 45
length of query: 282
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 260
effective length of database: 17,147,199,772
effective search space: 4458271940720
effective search space used: 4458271940720
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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