ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet99g09 |
|---|---|
| Clone Library Name | barley_pub |
>PSBO_FRIAG (O49079) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 329 Score = 102 bits (253), Expect = 3e-22 Identities = 48/52 (92%), Positives = 51/52 (98%) Frame = -2 Query: 376 STGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 221 STG ITLSVTKSKPETGEVIGVFES+QPSDTDLG+KAPKDVKIQG+WYAQLE Sbjct: 278 STGKITLSVTKSKPETGEVIGVFESIQPSDTDLGSKAPKDVKIQGIWYAQLE 329
>PSBO_TOBAC (Q40459) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 332 Score = 100 bits (248), Expect = 1e-21 Identities = 47/52 (90%), Positives = 50/52 (96%) Frame = -2 Query: 376 STGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 221 STG ITLSVT+SKPETGEVIGVFES+QPSDTDLGAK PKDVKIQG+WYAQLE Sbjct: 281 STGKITLSVTQSKPETGEVIGVFESIQPSDTDLGAKVPKDVKIQGIWYAQLE 332
>PSBO_PEA (P14226) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 329 Score = 100 bits (248), Expect = 1e-21 Identities = 48/53 (90%), Positives = 51/53 (96%) Frame = -2 Query: 376 STGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLES 218 S G ITLSVT++KPETGEVIGVFES+QPSDTDLGAKAPKDVKIQGVWYAQLES Sbjct: 277 SKGKITLSVTQTKPETGEVIGVFESIQPSDTDLGAKAPKDVKIQGVWYAQLES 329
>PSBO_WHEAT (P27665) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 325 Score = 99.8 bits (247), Expect = 1e-21 Identities = 51/54 (94%), Positives = 52/54 (96%) Frame = -2 Query: 376 STGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLESN 215 STGNITLSVTKSKPETGEVIGVFESVQPSDTDL +APKDVKIQGVWYAQLESN Sbjct: 274 STGNITLSVTKSKPETGEVIGVFESVQPSDTDL--EAPKDVKIQGVWYAQLESN 325
>PSBO_LYCES (P23322) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 329 Score = 98.6 bits (244), Expect = 3e-21 Identities = 46/51 (90%), Positives = 49/51 (96%) Frame = -2 Query: 373 TGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 221 TG ITLSVT+SKPETGEVIGVFES+QPSDTDLGAK PKDVKIQG+WYAQLE Sbjct: 279 TGKITLSVTQSKPETGEVIGVFESIQPSDTDLGAKVPKDVKIQGIWYAQLE 329
>PSBO1_ARATH (P23321) Oxygen-evolving enhancer protein 1-1, chloroplast| precursor (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 332 Score = 96.3 bits (238), Expect = 2e-20 Identities = 46/52 (88%), Positives = 47/52 (90%) Frame = -2 Query: 376 STGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 221 S G ITL VTKSKPETGEVIGVFES+QPSDTDLGAK PKDVKIQGVWY QLE Sbjct: 281 SVGEITLKVTKSKPETGEVIGVFESLQPSDTDLGAKVPKDVKIQGVWYGQLE 332
>PSBO_SOLTU (P26320) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 333 Score = 95.9 bits (237), Expect = 2e-20 Identities = 44/52 (84%), Positives = 48/52 (92%) Frame = -2 Query: 373 TGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLES 218 TG IT +VTKS P+TGEVIGVFES+QPSDTDLGAK PKDVKIQG+WYAQLES Sbjct: 282 TGKITFTVTKSNPQTGEVIGVFESIQPSDTDLGAKTPKDVKIQGIWYAQLES 333
>PSBO2_ARATH (Q9S841) Oxygen-evolving enhancer protein 1-2, chloroplast| precursor (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 331 Score = 95.1 bits (235), Expect = 4e-20 Identities = 44/52 (84%), Positives = 47/52 (90%) Frame = -2 Query: 376 STGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 221 S G ITL +TKSKPETGEVIGVFES+QPSDTDLGAK PKDVKIQGVWY Q+E Sbjct: 280 SVGEITLKITKSKPETGEVIGVFESLQPSDTDLGAKVPKDVKIQGVWYGQIE 331
>PSBO_SPIOL (P12359) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 332 Score = 94.7 bits (234), Expect = 5e-20 Identities = 45/52 (86%), Positives = 48/52 (92%) Frame = -2 Query: 376 STGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 221 S G ITLSVT SKPETGEVIGVF+S+QPSDTDLGAK PKDVKI+GVWYAQLE Sbjct: 279 SKGTITLSVTSSKPETGEVIGVFQSLQPSDTDLGAKVPKDVKIEGVWYAQLE 330
>PSBO_EUGGR (P46483) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) Length = 338 Score = 76.6 bits (187), Expect = 1e-14 Identities = 34/51 (66%), Positives = 38/51 (74%) Frame = -2 Query: 376 STGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQL 224 S G I V K ETGE+ GVFES+QPSDTDLGAK PKD+K GVWYAQ+ Sbjct: 284 SVGTIAFKVAKVNAETGEIAGVFESIQPSDTDLGAKVPKDIKTSGVWYAQI 334
>PSBO_CHLRE (P12853) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) Length = 291 Score = 75.9 bits (185), Expect = 2e-14 Identities = 33/50 (66%), Positives = 40/50 (80%) Frame = -2 Query: 370 GNITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 221 G+ SV K P TGE+ GVFES+QPSDTDLGAK PKD+K+ G+WYAQL+ Sbjct: 242 GSAVFSVAKVDPVTGEIAGVFESIQPSDTDLGAKPPKDIKVTGLWYAQLK 291
>PSBO_VOLCA (Q9SBN6) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) Length = 293 Score = 72.0 bits (175), Expect = 3e-13 Identities = 32/49 (65%), Positives = 37/49 (75%) Frame = -2 Query: 370 GNITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQL 224 G+ SV K TGE+ GVFES+QPSDTDLGAK PKD+KI G+WY QL Sbjct: 243 GSAVFSVAKVNTATGEIAGVFESIQPSDTDLGAKPPKDIKITGLWYGQL 291
>PSBO_CYAA5 (Q9R6W6) Photosystem II manganese-stabilizing polypeptide precursor| (MSP) Length = 275 Score = 65.5 bits (158), Expect = 3e-11 Identities = 30/49 (61%), Positives = 40/49 (81%) Frame = -2 Query: 370 GNITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQL 224 G+I+L VTK TGE+ GVF+S QPSDTDLGAK P +VKI+G++YA++ Sbjct: 223 GSISLQVTKVDQATGEIAGVFDSEQPSDTDLGAKEPVEVKIRGIFYARV 271
>PSBO_SYNY3 (P10549) Photosystem II manganese-stabilizing polypeptide precursor| (MSP) Length = 274 Score = 64.7 bits (156), Expect = 5e-11 Identities = 27/52 (51%), Positives = 41/52 (78%) Frame = -2 Query: 370 GNITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLESN 215 G ++L VT+ TGE+ G+FES QPSDTDLGAK P DVK++G++Y +++++ Sbjct: 222 GTLSLQVTQVDGSTGEIAGIFESEQPSDTDLGAKEPLDVKVRGIFYGRVDTD 273
>PSBO_ANASP (P13907) Photosystem II manganese-stabilizing polypeptide precursor| (MSP) Length = 273 Score = 63.5 bits (153), Expect = 1e-10 Identities = 28/50 (56%), Positives = 38/50 (76%) Frame = -2 Query: 370 GNITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 221 G I+L + K +GE+ G FES QPSDTDLGA PK+VKI+G++YA++E Sbjct: 224 GKISLQIAKVDSSSGEIAGTFESEQPSDTDLGADEPKEVKIRGIFYARVE 273
>PSBO_SYNEN (P0A432) Photosystem II manganese-stabilizing polypeptide precursor| (MSP) Length = 272 Score = 58.2 bits (139), Expect = 5e-09 Identities = 28/50 (56%), Positives = 35/50 (70%) Frame = -2 Query: 370 GNITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 221 G I+L+V K TGE+ G FES Q SD D+GA P +VKIQGV+YA +E Sbjct: 221 GQISLNVAKVDGRTGEIAGTFESEQLSDDDMGAHEPHEVKIQGVFYASIE 270
>PSBO_SYNEL (P0A431) Photosystem II manganese-stabilizing polypeptide precursor| (MSP) Length = 272 Score = 58.2 bits (139), Expect = 5e-09 Identities = 28/50 (56%), Positives = 35/50 (70%) Frame = -2 Query: 370 GNITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 221 G I+L+V K TGE+ G FES Q SD D+GA P +VKIQGV+YA +E Sbjct: 221 GQISLNVAKVDGRTGEIAGTFESEQLSDDDMGAHEPHEVKIQGVFYASIE 270
>PSBO_SYNP7 (P11472) Photosystem II manganese-stabilizing polypeptide precursor| (MSP) Length = 277 Score = 56.6 bits (135), Expect = 1e-08 Identities = 26/50 (52%), Positives = 36/50 (72%) Frame = -2 Query: 370 GNITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 221 G I+L+V+K TGEV GVF ++QPSDTD+G K DVK+ G +Y ++E Sbjct: 224 GEISLAVSKVDGATGEVAGVFTAIQPSDTDMGGKEAVDVKLVGQFYGRIE 273
>CH10_ENTFA (Q93EU7) 10 kDa chaperonin (Protein Cpn10) (groES protein)| Length = 94 Score = 32.7 bits (73), Expect = 0.22 Identities = 19/41 (46%), Positives = 23/41 (56%) Frame = -2 Query: 370 GNITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKI 248 G + SV K KP+TGEVI V E + G K P +VKI Sbjct: 23 GIVLASVAKEKPQTGEVIAVGEG---RVLENGTKVPMEVKI 60
>MECR_RAT (Q9Z311) Trans-2-enoyl-CoA reductase, mitochondrial precursor (EC| 1.3.1.38) (Nuclear receptor-binding factor 1) (NRBF-1) Length = 373 Score = 30.0 bits (66), Expect = 1.4 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 2/46 (4%) Frame = -2 Query: 298 QPSDTDLGAKAPKDVKIQGVWYAQLESN*SIAEVK--ILIFCACIR 167 QP + KD+K++G W +Q + N S E K ILI C IR Sbjct: 291 QPVTASVSMLIFKDLKLRGFWLSQWKKNHSPDEFKELILILCNLIR 336
>MECR_MOUSE (Q9DCS3) Trans-2-enoyl-CoA reductase, mitochondrial precursor (EC| 1.3.1.38) Length = 373 Score = 29.3 bits (64), Expect = 2.4 Identities = 15/42 (35%), Positives = 21/42 (50%) Frame = -2 Query: 298 QPSDTDLGAKAPKDVKIQGVWYAQLESN*SIAEVKILIFCAC 173 QP + KD+K++G W +Q + N S E K LI C Sbjct: 291 QPVTASVSLLIFKDLKLRGFWLSQWKKNHSPDEFKELILTLC 332
>BTD_DROME (Q24266) Transcription factor btd (Protein buttonhead)| Length = 644 Score = 29.3 bits (64), Expect = 2.4 Identities = 19/77 (24%), Positives = 36/77 (46%) Frame = +3 Query: 114 YTHKHIVASILSSPPTNPRMHAQKMSIFTSAML*LDSSCAYHTPWILTSLGALAPRSVSD 293 Y H S ++ PP P + Q+M+ TS+ ++ PW +S A+ P + S Sbjct: 474 YQHSTSAGSSVNPPPPPPPLFQQQMTTTTSSA----AASFVEQPWSSSSSRAIQPATTS- 528 Query: 294 GCTLSKTPITSPVSGLL 344 + S + +SP + ++ Sbjct: 529 ASSSSSSSASSPAAAVV 545
>ILVC_HELPJ (Q9ZMA9) Ketol-acid reductoisomerase (EC 1.1.1.86)| (Acetohydroxy-acid isomeroreductase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 330 Score = 28.9 bits (63), Expect = 3.2 Identities = 15/25 (60%), Positives = 19/25 (76%) Frame = -2 Query: 361 TLSVTKSKPETGEVIGVFESVQPSD 287 +LSV+K+K E EV+GV E VQ SD Sbjct: 52 SLSVSKAKKEGFEVLGVKELVQQSD 76
>DPOL_NPVAC (P18131) DNA polymerase (EC 2.7.7.7)| Length = 984 Score = 28.1 bits (61), Expect = 5.4 Identities = 14/47 (29%), Positives = 21/47 (44%) Frame = +2 Query: 116 HTQTHCCLDSFLSTDQPTYACTKDEYLHFCYALVRLELRVPHTLDLD 256 H + +D +S Y DEY FC+ +L ++P T D D Sbjct: 204 HNMSKASVDCIMSIGFVVYK--NDEYAKFCFMYHKLPTQIPETYDDD 248
>PI52B_RAT (O88377) Phosphatidylinositol-4-phosphate 5-kinase type-2 beta (EC| 2.7.1.68) (Phosphatidylinositol-4-phosphate 5-kinase type II beta) (1-phosphatidylinositol-4-phosphate 5-kinase 2-beta) (PtdIns(4)P-5-kinase isoform 2-beta) (PIP5KII-beta) (Diph Length = 416 Score = 28.1 bits (61), Expect = 5.4 Identities = 15/54 (27%), Positives = 27/54 (50%) Frame = +1 Query: 4 TKFVNIHIHGGSIS*AGEQEMITEAKI*TDHSGFILDTHTNTLLPRFFPLHRPT 165 T+F+ + I +++ I + FI++ H NTLLP+F ++R T Sbjct: 137 TRFLTTYDRRFVIKTVSSEDVAEMHNILKKYHQFIVECHGNTLLPQFLGMYRLT 190
>PI52B_MOUSE (Q80XI4) Phosphatidylinositol-4-phosphate 5-kinase type-2 beta (EC| 2.7.1.68) (Phosphatidylinositol-4-phosphate 5-kinase type II beta) (1-phosphatidylinositol-4-phosphate 5-kinase 2-beta) (PtdIns(4)P-5-kinase isoform 2-beta) (PIP5KII-beta) (Di Length = 416 Score = 28.1 bits (61), Expect = 5.4 Identities = 15/54 (27%), Positives = 27/54 (50%) Frame = +1 Query: 4 TKFVNIHIHGGSIS*AGEQEMITEAKI*TDHSGFILDTHTNTLLPRFFPLHRPT 165 T+F+ + I +++ I + FI++ H NTLLP+F ++R T Sbjct: 137 TRFLTTYDRRFVIKTVSSEDVAEMHNILKKYHQFIVECHGNTLLPQFLGMYRLT 190
>PI52B_HUMAN (P78356) Phosphatidylinositol-4-phosphate 5-kinase type-2 beta (EC| 2.7.1.68) (Phosphatidylinositol-4-phosphate 5-kinase type II beta) (1-phosphatidylinositol-4-phosphate 5-kinase 2-beta) (PtdIns(4)P-5-kinase isoform 2-beta) (PIP5KII-beta) (Di Length = 416 Score = 28.1 bits (61), Expect = 5.4 Identities = 15/54 (27%), Positives = 27/54 (50%) Frame = +1 Query: 4 TKFVNIHIHGGSIS*AGEQEMITEAKI*TDHSGFILDTHTNTLLPRFFPLHRPT 165 T+F+ + I +++ I + FI++ H NTLLP+F ++R T Sbjct: 137 TRFLTTYDRRFVIKTVSSEDVAEMHNILKKYHQFIVECHGNTLLPQFLGMYRLT 190
>PAND_AGRT5 (Q8U9Q9) Aspartate 1-decarboxylase precursor (EC 4.1.1.11)| (Aspartate alpha-decarboxylase) [Contains: Aspartate 1-decarboxylase beta chain; Aspartate 1-decarboxylase alpha chain] Length = 155 Score = 28.1 bits (61), Expect = 5.4 Identities = 11/34 (32%), Positives = 22/34 (64%) Frame = -1 Query: 140 RGNNVFVCVSSIKPE*SVYILASVIISCSPAHDI 39 RG+ V +C SS E ++Y A ++++ +P +D+ Sbjct: 80 RGDQVIICSSSYVEETALYDTAPMVLTFTPKNDV 113
>KCNKA_RAT (Q9JIS4) Potassium channel subfamily K member 10 (Outward| rectifying potassium channel protein TREK-2) (TREK-2 K(+) channel subunit) Length = 538 Score = 27.7 bits (60), Expect = 7.0 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 2/42 (4%) Frame = +2 Query: 146 FLSTDQPTYACTKDEYL--HFCYALVRLELRVPHTLDLDILG 265 F S+ + T A K E+L H C + LE + H LD D G Sbjct: 97 FESSQKNTIALEKAEFLRDHICVSPQELETLIQHALDADNAG 138
>PI52A_CHICK (Q5F356) Phosphatidylinositol-4-phosphate 5-kinase type-2 alpha (EC| 2.7.1.68) (Phosphatidylinositol-4-phosphate 5-kinase type II alpha) (1-phosphatidylinositol-4-phosphate 5-kinase 2-alpha) (PtdIns(4)P-5-kinase isoform 2-alpha) (PIP5KII-alpha Length = 405 Score = 27.7 bits (60), Expect = 7.0 Identities = 11/21 (52%), Positives = 16/21 (76%) Frame = +1 Query: 103 FILDTHTNTLLPRFFPLHRPT 165 FI++ H NTLLP+F ++R T Sbjct: 164 FIVECHGNTLLPQFLGMYRLT 184
>USH2A_MOUSE (Q2QI47) Usherin precursor (Usher syndrome type-2A protein homolog)| (Usher syndrome type IIa protein homolog) Length = 5193 Score = 27.7 bits (60), Expect = 7.0 Identities = 10/24 (41%), Positives = 14/24 (58%) Frame = +2 Query: 125 THCCLDSFLSTDQPTYACTKDEYL 196 T C D L QP Y+C +D+Y+ Sbjct: 3180 TKVCCDGLLYDPQPGYSCCEDKYI 3203
>TIBA_ECOLI (Q9XD84) Adhesin/invasin tibA precursor (Glycoprotein tibA)| Length = 989 Score = 27.7 bits (60), Expect = 7.0 Identities = 14/34 (41%), Positives = 19/34 (55%) Frame = -2 Query: 334 ETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWY 233 E G + VF+ Q SDT +G+ DV+ GV Y Sbjct: 347 ENGGYLTVFDGHQASDTMVGSDGTLDVRSGGVLY 380
>EBNA6_EBV (P03204) Epstein-Barr nuclear antigen 6 (EBV nuclear antigen 6)| (EBNA-6) (EBNA-3C) (EBNA-4B) Length = 992 Score = 27.3 bits (59), Expect = 9.2 Identities = 9/14 (64%), Positives = 10/14 (71%) Frame = +1 Query: 232 RTTHPGS*HPWAPW 273 R+ HP HPWAPW Sbjct: 799 RSQHPCYRHPWAPW 812
>KCNKA_HUMAN (P57789) Potassium channel subfamily K member 10 (Outward| rectifying potassium channel protein TREK-2) (TREK-2 K(+) channel subunit) Length = 538 Score = 27.3 bits (59), Expect = 9.2 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 2/42 (4%) Frame = +2 Query: 146 FLSTDQPTYACTKDEYL--HFCYALVRLELRVPHTLDLDILG 265 F S+ + T A K E+L H C + LE + H LD D G Sbjct: 97 FESSQKNTIALEKAEFLRDHVCVSPQELETLIQHALDADNAG 138
>DPOL_NPVBM (P41712) DNA polymerase (EC 2.7.7.7)| Length = 986 Score = 27.3 bits (59), Expect = 9.2 Identities = 14/47 (29%), Positives = 20/47 (42%) Frame = +2 Query: 116 HTQTHCCLDSFLSTDQPTYACTKDEYLHFCYALVRLELRVPHTLDLD 256 H + +D +S Y DEY FC+ +L +P T D D Sbjct: 204 HNMSKASVDCIMSIGFVVYK--NDEYARFCFMYHKLPTEIPETHDDD 248
>PK1L1_MOUSE (Q8R526) Polycystic kidney disease 1-like 1 protein| (Polycystin-1L1) (Fragment) Length = 531 Score = 27.3 bits (59), Expect = 9.2 Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 4/35 (11%) Frame = +3 Query: 102 FYTRYTHK----HIVASILSSPPTNPRMHAQKMSI 194 FY+++T HI S+ S PP+ +H Q++++ Sbjct: 199 FYSKFTEYLEDFHIWLSLYSQPPSRSYLHTQRLAV 233
>VCAP_SHV21 (Q00999) Major capsid protein (MCP)| Length = 1371 Score = 27.3 bits (59), Expect = 9.2 Identities = 21/84 (25%), Positives = 35/84 (41%) Frame = +3 Query: 114 YTHKHIVASILSSPPTNPRMHAQKMSIFTSAML*LDSSCAYHTPWILTSLGALAPRSVSD 293 YT + + ++ S + + H S F L S Y + +GA+ +V Sbjct: 198 YTERGLKKNVKSDLISMFKTHLVNNSFFLDKSEHLPHSRQYVLGILTEMIGAVCKETVFK 257 Query: 294 GCTLSKTPITSPVSGLLLVTLRVM 365 G + T P+SG+L T +VM Sbjct: 258 GISTYSTANGQPISGVLETTDKVM 281 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 49,720,504 Number of Sequences: 219361 Number of extensions: 926476 Number of successful extensions: 2589 Number of sequences better than 10.0: 37 Number of HSP's better than 10.0 without gapping: 2549 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2588 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 1402043640 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
