ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet99g08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1BRD1_HUMAN (O95696) Bromodomain-containing protein 1 (BR140-like... 29 2.7
2POT13_ARATH (Q8LPL8) Potassium transporter 13 (AtPOT13) (AtKT5) 28 4.6

>BRD1_HUMAN (O95696) Bromodomain-containing protein 1 (BR140-like protein)|
          Length = 1058

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = +1

Query: 34  LSRSKHLMNRIKRTNELV*SMTHPPFSDNTKKHLI*PQGTVRIYFYSPPA 183
           L   +H  NR+K+ NE + S    P S +       P+  VRI  YSPP+
Sbjct: 87  LRTKRHKNNRVKKKNEALPSAHGTPASASAL-----PEPKVRIVEYSPPS 131



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>POT13_ARATH (Q8LPL8) Potassium transporter 13 (AtPOT13) (AtKT5)|
          Length = 855

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
 Frame = -3

Query: 145 VVKLGVFSC-CRKTVGGSWIILVHLFS*FCSLDVWTWTTS---STKIQK 11
           +V+L  FS  C     GSWIILV     F  + VW + +     T++QK
Sbjct: 541 IVELVFFSSVCSSVADGSWIILVFATIMFLIMFVWNYGSKLKYETEVQK 589


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,402,499
Number of Sequences: 219361
Number of extensions: 709290
Number of successful extensions: 1168
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1168
length of database: 80,573,946
effective HSP length: 70
effective length of database: 65,218,676
effective search space used: 1565248224
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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