Clone Name | rbaet99g08 |
---|---|
Clone Library Name | barley_pub |
>gb|AY633768.1| Sus scrofa relaxin-3/INSL7 receptor 2 (GPCR142) mRNA, complete cds Length = 1122 Score = 48.1 bits (24), Expect = 0.015 Identities = 24/24 (100%) Strand = Plus / Plus Query: 175 ccaccagctacctgctgctgctgg 198 |||||||||||||||||||||||| Sbjct: 659 ccaccagctacctgctgctgctgg 682
>gb|AY633767.1| Bos taurus relaxin-3/INSL7 receptor 2 (GPCR142) mRNA, complete cds Length = 1122 Score = 48.1 bits (24), Expect = 0.015 Identities = 24/24 (100%) Strand = Plus / Plus Query: 175 ccaccagctacctgctgctgctgg 198 |||||||||||||||||||||||| Sbjct: 659 ccaccagctacctgctgctgctgg 682
>gb|AY633766.1| Macaca nemestrina relaxin-3/INSL7 receptor 2 (GPCR142) mRNA, complete cds Length = 1122 Score = 48.1 bits (24), Expect = 0.015 Identities = 24/24 (100%) Strand = Plus / Plus Query: 175 ccaccagctacctgctgctgctgg 198 |||||||||||||||||||||||| Sbjct: 659 ccaccagctacctgctgctgctgg 682
>ref|NM_181885.1| Homo sapiens relaxin/insulin-like family peptide receptor 4 (RXFP4), mRNA Length = 1125 Score = 48.1 bits (24), Expect = 0.015 Identities = 24/24 (100%) Strand = Plus / Plus Query: 175 ccaccagctacctgctgctgctgg 198 |||||||||||||||||||||||| Sbjct: 662 ccaccagctacctgctgctgctgg 685
>gb|AY394502.1| Homo sapiens relaxin-3 receptor-2 mRNA, complete cds Length = 1125 Score = 48.1 bits (24), Expect = 0.015 Identities = 24/24 (100%) Strand = Plus / Plus Query: 175 ccaccagctacctgctgctgctgg 198 |||||||||||||||||||||||| Sbjct: 662 ccaccagctacctgctgctgctgg 685
>gb|AY288415.1| Homo sapiens G protein-coupled receptor 100 (GPR100) mRNA, complete cds Length = 1125 Score = 48.1 bits (24), Expect = 0.015 Identities = 24/24 (100%) Strand = Plus / Plus Query: 175 ccaccagctacctgctgctgctgg 198 |||||||||||||||||||||||| Sbjct: 662 ccaccagctacctgctgctgctgg 685
>gb|AY170824.1| Homo sapiens G protein-coupled receptor (GPR100) mRNA, complete cds Length = 1125 Score = 48.1 bits (24), Expect = 0.015 Identities = 24/24 (100%) Strand = Plus / Plus Query: 175 ccaccagctacctgctgctgctgg 198 |||||||||||||||||||||||| Sbjct: 662 ccaccagctacctgctgctgctgg 685
>gb|BC101507.1| Homo sapiens relaxin family peptide receptor 4, mRNA (cDNA clone MGC:126556 IMAGE:8069013), complete cds Length = 1236 Score = 48.1 bits (24), Expect = 0.015 Identities = 24/24 (100%) Strand = Plus / Plus Query: 175 ccaccagctacctgctgctgctgg 198 |||||||||||||||||||||||| Sbjct: 682 ccaccagctacctgctgctgctgg 705
>gb|BC101509.1| Homo sapiens relaxin family peptide receptor 4, mRNA (cDNA clone MGC:126558 IMAGE:8069015), complete cds Length = 1236 Score = 48.1 bits (24), Expect = 0.015 Identities = 24/24 (100%) Strand = Plus / Plus Query: 175 ccaccagctacctgctgctgctgg 198 |||||||||||||||||||||||| Sbjct: 682 ccaccagctacctgctgctgctgg 705
>emb|AL355388.30| Human DNA sequence from clone RP11-336K24 on chromosome 1 Contains the 5' end of the RIT1 gene for Ras-like without CAAX 1, the gene for a novel protein (KIAA0907), the ARHGEF2 gene for rho/rac guanine nucleotide exchange factor (GEF) 2, four novel genes, the SSR2 gene for signal sequence receptor beta (translocon-associated protein beta), the C1orf6 gene for chromosome 1 open reading frame 6, the gene for mitogen-activated protein-binding protein-interacting protein (MAPBPIP), the RAB25 gene for RAB25 (member RAS oncogene family), the 5' end of the LMNA gene for lamin A/C and three CpG islands, complete sequence Length = 205463 Score = 48.1 bits (24), Expect = 0.015 Identities = 24/24 (100%) Strand = Plus / Plus Query: 175 ccaccagctacctgctgctgctgg 198 |||||||||||||||||||||||| Sbjct: 36051 ccaccagctacctgctgctgctgg 36074
>dbj|AB083593.1| Homo sapiens GPCR gene for putative G-protein coupled receptor, complete CDS, clone:hGPCR11 Length = 1125 Score = 48.1 bits (24), Expect = 0.015 Identities = 24/24 (100%) Strand = Plus / Plus Query: 175 ccaccagctacctgctgctgctgg 198 |||||||||||||||||||||||| Sbjct: 662 ccaccagctacctgctgctgctgg 685
>ref|NM_001007076.1| Bos taurus G protein-coupled receptor 100 (GPR100), mRNA Length = 1122 Score = 48.1 bits (24), Expect = 0.015 Identities = 24/24 (100%) Strand = Plus / Plus Query: 175 ccaccagctacctgctgctgctgg 198 |||||||||||||||||||||||| Sbjct: 659 ccaccagctacctgctgctgctgg 682
>ref|NM_001005844.1| Sus scrofa G protein-coupled receptor 100 (GPR100), mRNA Length = 1122 Score = 48.1 bits (24), Expect = 0.015 Identities = 24/24 (100%) Strand = Plus / Plus Query: 175 ccaccagctacctgctgctgctgg 198 |||||||||||||||||||||||| Sbjct: 659 ccaccagctacctgctgctgctgg 682
>dbj|AB065617.1| Homo sapiens gene for seven transmembrane helix receptor, complete cds, isolate:CBRC7TM_180 Length = 42863 Score = 48.1 bits (24), Expect = 0.015 Identities = 24/24 (100%) Strand = Plus / Plus Query: 175 ccaccagctacctgctgctgctgg 198 |||||||||||||||||||||||| Sbjct: 862 ccaccagctacctgctgctgctgg 885
>gb|AC122725.30| Medicago truncatula clone mth2-4c11, complete sequence Length = 134892 Score = 42.1 bits (21), Expect = 0.94 Identities = 21/21 (100%) Strand = Plus / Plus Query: 116 acaacacgaaaaaacacctaa 136 ||||||||||||||||||||| Sbjct: 70409 acaacacgaaaaaacacctaa 70429
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 0.94 Identities = 21/21 (100%) Strand = Plus / Plus Query: 77 atgaactagtatgatccatga 97 ||||||||||||||||||||| Sbjct: 1550611 atgaactagtatgatccatga 1550631
>gb|AC092698.11| Homo sapiens chromosome 8, clone RP11-813M16, complete sequence Length = 110085 Score = 42.1 bits (21), Expect = 0.94 Identities = 21/21 (100%) Strand = Plus / Plus Query: 17 aatttttgtactagatgttgt 37 ||||||||||||||||||||| Sbjct: 90662 aatttttgtactagatgttgt 90682
>dbj|AP000391.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0538C01 Length = 155643 Score = 42.1 bits (21), Expect = 0.94 Identities = 21/21 (100%) Strand = Plus / Plus Query: 77 atgaactagtatgatccatga 97 ||||||||||||||||||||| Sbjct: 79335 atgaactagtatgatccatga 79355
>ref|XM_751953.1| Ustilago maydis 521 hypothetical protein (UM00899.1) partial mRNA Length = 4335 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 182 ctacctgctgctgctggaac 201 |||||||||||||||||||| Sbjct: 1663 ctacctgctgctgctggaac 1644
>emb|CR974429.7| Mouse DNA sequence from clone RP23-177B9 on chromosome 12, complete sequence Length = 212593 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 59 acagaatcaagagaacaaat 78 |||||||||||||||||||| Sbjct: 180735 acagaatcaagagaacaaat 180716
>ref|XM_382491.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG02315.1) partial mRNA Length = 22800 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 178 ccagctacctgctgctgctg 197 |||||||||||||||||||| Sbjct: 7 ccagctacctgctgctgctg 26
>gb|AC121918.3| Mus musculus BAC clone RP24-195D23 from chromosome 2, complete sequence Length = 179270 Score = 40.1 bits (20), Expect = 3.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 168 ttactccccaccagctacctgctgctgctgga 199 ||||||||||||| |||||||| |||||||| Sbjct: 135084 ttactccccaccatgtacctgctcctgctgga 135053
>gb|AC122191.4| Mus musculus BAC clone RP23-42J4 from 6, complete sequence Length = 250147 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 cagaatcaagagaacaaatg 79 |||||||||||||||||||| Sbjct: 156684 cagaatcaagagaacaaatg 156703
>gb|BC094061.1| Mus musculus basic helix-loop-helix domain containing, class B, 8, mRNA (cDNA clone MGC:102506 IMAGE:4165423), complete cds Length = 3487 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 178 ccagctacctgctgctgctg 197 |||||||||||||||||||| Sbjct: 606 ccagctacctgctgctgctg 587
>gb|BC011486.1| Mus musculus basic helix-loop-helix domain containing, class B, 8, mRNA (cDNA clone MGC:19046 IMAGE:4189225), complete cds Length = 3472 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 178 ccagctacctgctgctgctg 197 |||||||||||||||||||| Sbjct: 580 ccagctacctgctgctgctg 561
>ref|NM_010800.3| Mus musculus basic helix-loop-helix domain containing, class B, 8 (Bhlhb8), mRNA Length = 3520 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 178 ccagctacctgctgctgctg 197 |||||||||||||||||||| Sbjct: 630 ccagctacctgctgctgctg 611
>dbj|AK020643.1| Mus musculus adult male urinary bladder cDNA, RIKEN full-length enriched library, clone:9530075I17 product:muscle, intestine and stomach expression 1, full insert sequence Length = 1026 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 178 ccagctacctgctgctgctg 197 |||||||||||||||||||| Sbjct: 589 ccagctacctgctgctgctg 570
>dbj|BS000215.2| Pan troglodytes chromosome 22 clone:RP43-183P07, map 22, complete sequences Length = 151501 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 cttctgaatttttgtactag 30 |||||||||||||||||||| Sbjct: 52643 cttctgaatttttgtactag 52662
>gb|AF091858.1|AF091858 Mus musculus myogenic repressor MIST1 (Mist1) gene, complete cds Length = 2128 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 178 ccagctacctgctgctgctg 197 |||||||||||||||||||| Sbjct: 1858 ccagctacctgctgctgctg 1839
>gb|AC155330.3| Mus musculus 6 BAC RP24-146L23 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 215602 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 77 atgaactagtatgatccatg 96 |||||||||||||||||||| Sbjct: 99425 atgaactagtatgatccatg 99406
>dbj|AP001698.1| Homo sapiens genomic DNA, chromosome 21q, section 42/105 Length = 340000 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 cttctgaatttttgtactag 30 |||||||||||||||||||| Sbjct: 289026 cttctgaatttttgtactag 289045
>gb|AE016830.1| Enterococcus faecalis V583, complete genome Length = 3218031 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 ataagacttctgaatttttg 24 |||||||||||||||||||| Sbjct: 1799866 ataagacttctgaatttttg 1799885
>gb|AC121845.3| Mus musculus BAC clone RP24-82B23 from 5, complete sequence Length = 217530 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 178 ccagctacctgctgctgctg 197 |||||||||||||||||||| Sbjct: 68462 ccagctacctgctgctgctg 68481
>emb|AL732541.11| Mouse DNA sequence from clone RP23-306D20 on chromosome 2, complete sequence Length = 213918 Score = 40.1 bits (20), Expect = 3.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 168 ttactccccaccagctacctgctgctgctgga 199 ||||||||||||| |||||||| |||||||| Sbjct: 180262 ttactccccaccatgtacctgctcctgctgga 180293
>dbj|AP001603.1| Homo sapiens genomic DNA, chromosome 21, clone:KB1411F11, APP-D21S292 region, complete sequence Length = 155767 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 cttctgaatttttgtactag 30 |||||||||||||||||||| Sbjct: 119147 cttctgaatttttgtactag 119166 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,229,136 Number of Sequences: 3902068 Number of extensions: 3229136 Number of successful extensions: 61367 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 35 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 61292 Number of HSP's gapped (non-prelim): 75 length of query: 285 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 263 effective length of database: 17,147,199,772 effective search space: 4509713540036 effective search space used: 4509713540036 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)