Clone Information

BLAST Search Result

Clone Name	rbaet99g07
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ITB4_HUMAN (P16144) Integrin beta-4 precursor (GP150) (CD104 ant...	34	0.100
2	RNF25_HUMAN (Q96BH1) RING finger protein 25 (EC 6.3.2.-)	31	0.65
3	BAT3_RAT (Q6MG49) Large proline-rich protein BAT3 (HLA-B-associa...	31	0.84
4	DDEF1_BOVIN (O97902) 130-kDa phosphatidylinositol 4,5-biphosphat...	30	1.1
5	LAR_DROME (P16621) Tyrosine-protein phosphatase Lar precursor (E...	30	1.4
6	DDEF1_HUMAN (Q9ULH1) 130-kDa phosphatidylinositol 4,5-biphosphat...	30	1.4
7	GCNL2_MOUSE (Q9JHD2) General control of amino acid synthesis pro...	30	1.9
8	DDEF1_MOUSE (Q9QWY8) 130-kDa phosphatidylinositol 4,5-biphosphat...	30	1.9
9	UBE1Y_MOUSE (P31254) Ubiquitin-activating enzyme E1 Y (Fragment)	30	1.9
10	ENV2_MOUSE (P11370) Retrovirus-related Env polyprotein from Fv-4...	29	2.5
11	NMDE4_HUMAN (O15399) Glutamate [NMDA] receptor subunit epsilon 4...	29	2.5
12	IASPP_HUMAN (Q8WUF5) RelA-associated inhibitor (Inhibitor of ASP...	29	2.5
13	MYO15_HUMAN (Q9UKN7) Myosin-15 (Myosin XV) (Unconventional myosi...	29	2.5
14	I17RC_HUMAN (Q8NAC3) Interleukin-17 receptor C precursor (IL-17 ...	29	2.5
15	IASPP_MOUSE (Q5I1X5) RelA-associated inhibitor (Inhibitor of ASP...	29	3.2
16	ARHG1_HUMAN (Q92888) Rho guanine nucleotide exchange factor 1 (p...	29	3.2
17	FOG1_HUMAN (Q8IX07) Zinc finger protein ZFPM1 (Zinc finger prote...	29	3.2
18	ICP4_HHV11 (P08392) Trans-acting transcriptional protein ICP4 (T...	29	3.2
19	PKHA4_HUMAN (Q9H4M7) Pleckstrin homology domain-containing famil...	29	3.2
20	XKR6_HUMAN (Q5GH73) XK-related protein 6	28	4.2
21	SYI_PYRAE (Q8ZWU4) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isole...	28	4.2
22	GP153_HUMAN (Q6NV75) Probable G-protein coupled receptor 153 (G-...	28	4.2
23	GP153_MOUSE (Q8K0Z9) Probable G-protein coupled receptor 153 (G-...	28	4.2
24	YRR2_CAEEL (Q09345) Hypothetical protein R144.2	28	5.5
25	AMY_STRTL (P27350) Alpha-amylase precursor (EC 3.2.1.1) (1,4-alp...	28	5.5
26	MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, trac...	28	5.5
27	HYPF_AZOVI (P40596) Carbamoyltransferase hypF (EC 2.1.3.-) (Carb...	28	5.5
28	S6A14_MOUSE (Q9JMA9) Sodium- and chloride-dependent neutral and ...	28	5.5
29	FOXN1_HUMAN (O15353) Forkhead box protein N1 (Transcription fact...	28	5.5
30	VP13B_MOUSE (Q80TY5) Vacuolar protein sorting 13B (Cohen syndrom...	28	5.5
31	RAII_RHIET (O54451) Autoinducer synthesis protein raiI	28	7.2
32	MYBPH_CHICK (Q05623) Myosin-binding protein H (MyBP-H) (H-protei...	28	7.2
33	SUR2_CAEEL (Q10669) Protein sur-2	28	7.2
34	ZITB_SALTY (Q8ZQT3) Zinc transporter zitB	28	7.2
35	ZITB_SALTI (Q8Z8B6) Zinc transporter zitB	28	7.2
36	CI047_HUMAN (Q6ZRZ4) Protein C9orf47 precursor	28	7.2
37	PALI_DEBHA (Q6BNJ2) pH-response regulator protein palI/RIM9	28	7.2
38	GLTL1_MOUSE (Q9JJ61) Putative polypeptide N-acetylgalactosaminyl...	28	7.2
39	POLG_HRV89 (P07210) Genome polyprotein [Contains: Coat protein V...	28	7.2
40	MYCB_RAT (P15063) Protein B-Myc	27	9.3
41	DCAM_DROME (P91931) S-adenosylmethionine decarboxylase proenzyme...	27	9.3
42	MUCDL_MOUSE (Q8VHF2) Mucin and cadherin-like protein precursor (...	27	9.3
43	Y192_WIGBR (Q8D309) UPF0243 zinc-binding protein WIGBR1920	27	9.3
44	GUNA_XANCP (P19487) Major extracellular endoglucanase precursor ...	27	9.3
45	CO9A3_CHICK (P32017) Collagen alpha-3(IX) chain precursor	27	9.3
46	DPOL_HHV21 (P07918) DNA polymerase (EC 2.7.7.7)	27	9.3
47	FUTSC_DROME (Q9W596) Microtubule-associated protein futsch	27	9.3
48	DPOL_HHV1K (P04292) DNA polymerase (EC 2.7.7.7)	27	9.3
49	NMDE4_RAT (Q62645) Glutamate [NMDA] receptor subunit epsilon 4 p...	27	9.3
50	NMDE4_MOUSE (Q03391) Glutamate [NMDA] receptor subunit epsilon 4...	27	9.3
51	CPSF6_XENLA (Q6DDW4) Cleavage and polyadenylation specificity fa...	27	9.3
52	MYCB_MOUSE (Q6P8Z1) Protein B-Myc	27	9.3

>ITB4_HUMAN (P16144) Integrin beta-4 precursor (GP150) (CD104 antigen)|
          Length = 1822

 Score = 33.9 bits (76), Expect = 0.100
 Identities = 29/93 (31%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
 Frame = +2

Query: 59   HNTYKGLDLDPTATRTRK--TKSNHVYTKQIQEQIPTTWACHSHCMRWYLTHAEWRTSHS 232
            H  ++ L    T TR     T+S H ++  +     T  +  SH  R      +  T   
Sbjct: 1476 HVPHRVLSTSSTLTRDYNSLTRSEHSHSTTLPRDYSTLTSVSSHDSRLTAGVPDTPTRLV 1535

Query: 233  WSSVGPLSPPAPLRSSWRRPRGTPRERPLPGTS 331
            +S++GP S    LR SW+ PR    ERPL G S
Sbjct: 1536 FSALGPTS----LRVSWQEPR---CERPLQGYS 1561

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>RNF25_HUMAN (Q96BH1) RING finger protein 25 (EC 6.3.2.-)|
          Length = 459

 Score = 31.2 bits (69), Expect = 0.65
 Identities = 16/36 (44%), Positives = 17/36 (47%)
 Frame = +2

Query: 251 LSPPAPLRSSWRRPRGTPRERPLPGTSSAGSGTRHT 358
           L PP P R  WR+P    R  P  G   A  GTR T
Sbjct: 337 LDPPKPSRGPWRQPE---RRHPKGGECHAPKGTRDT 369

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>BAT3_RAT (Q6MG49) Large proline-rich protein BAT3 (HLA-B-associated|
           transcript 3)
          Length = 1096

 Score = 30.8 bits (68), Expect = 0.84
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +2

Query: 242 VGPLSPPAPLRSSWRRPRGTPRERPLPGTSSAGSGTRHT 358
           + P S  AP  +  + P   P   P P T+SA +GT +T
Sbjct: 556 MAPASASAPATAQAQAPAPAPAPAPAPATASASAGTTNT 594

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>DDEF1_BOVIN (O97902) 130-kDa phosphatidylinositol 4,5-biphosphate-dependent|
           ARF1 GTPase-activating protein (PIP2-dependent ARF1 GAP)
           (ADP-ribosylation factor-directed GTPase-activating
           protein 1) (ARF GTPase-activating protein 1)
           (Development and differe
          Length = 1129

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
 Frame = +2

Query: 254 SPPAPLRSSWRRPRGTPRERPLPGTSSAGSGT---RHTPP 364
           +PP P R++ + P G P   PL   +S+GS T   + +PP
Sbjct: 793 APPLPPRNATKGPPGPPSTLPLSTQTSSGSSTLSKKRSPP 832

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>LAR_DROME (P16621) Tyrosine-protein phosphatase Lar precursor (EC 3.1.3.48)|
           (Protein-tyrosine-phosphate phosphohydrolase) (dLAR)
          Length = 2029

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 27/118 (22%), Positives = 42/118 (35%), Gaps = 15/118 (12%)
 Frame = +2

Query: 56  QHNTYKGLDLDPTATRTRKTKSNHVYTKQIQEQI--PTTWACHSHCMRWYLTHAE----- 214
           Q + ++  D+  TA   + TK  H     +  ++    T+A  +H  R   + A      
Sbjct: 517 QPSNFRATDIGETAVTLQWTKPTHSSENIVHYELYWNDTYANQAHHKRISNSEAYTLDGL 576

Query: 215 --------WRTSHSWSSVGPLSPPAPLRSSWRRPRGTPRERPLPGTSSAGSGTRHTPP 364
                   W  + S    G  +PP P+R+    P   PR      TSS        PP
Sbjct: 577 YPDTLYYIWLAARSQRGEGATTPPIPVRTKQYVPGAPPRNITAIATSSTTISLSWLPP 634

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>DDEF1_HUMAN (Q9ULH1) 130-kDa phosphatidylinositol 4,5-biphosphate-dependent|
           ARF1 GTPase-activating protein (PIP2-dependent ARF1 GAP)
           (ADP-ribosylation factor-directed GTPase-activating
           protein 1) (ARF GTPase-activating protein 1)
           (Development and differe
          Length = 956

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +2

Query: 254 SPPAPLRSSWRRPRGTPRERPLPGTSSAGSGT--RHTPP 364
           +PP P R++ + P G P   PL   +S+GS T  +  PP
Sbjct: 617 APPLPPRNAGKGPTGPPSTLPLSTQTSSGSSTLSKKRPP 655

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>GCNL2_MOUSE (Q9JHD2) General control of amino acid synthesis protein 5-like 2|
           (EC 2.3.1.48) (Histone acetyltransferase GCN5) (mmGCN5)
          Length = 830

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 18/45 (40%), Positives = 22/45 (48%)
 Frame = +2

Query: 209 AEWRTSHSWSSVGPLSPPAPLRSSWRRPRGTPRERPLPGTSSAGS 343
           A+ R  HS  +  P S PAP  +S   P  TP   P P  + AGS
Sbjct: 14  AQPRPLHS-PAPAPTSTPAPSPASASTPAPTPAPAPAPAAAPAGS 57

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>DDEF1_MOUSE (Q9QWY8) 130-kDa phosphatidylinositol 4,5-biphosphate-dependent|
           ARF1 GTPase-activating protein (PIP2-dependent ARF1 GAP)
           (ADP-ribosylation factor-directed GTPase-activating
           protein 1) (ARF GTPase-activating protein 1)
           (Development and differe
          Length = 1147

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +2

Query: 254 SPPAPLRSSWRRPRGTPRERPLPGTSSAGSGT--RHTPP 364
           +PP P R++ + P G P   PL   +S+GS T  +  PP
Sbjct: 805 APPLPPRNAGKGPTGPPSTLPLGTQTSSGSSTLSKKRPP 843

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>UBE1Y_MOUSE (P31254) Ubiquitin-activating enzyme E1 Y (Fragment)|
          Length = 442

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
 Frame = +2

Query: 152 QIPTTWACHSHCMRWYLTHAEWRTSHSWSSVGPLSPPAPLRSS----WRRPRGTP 304
           Q P TWA    C+ W   H   + SH+   +    PPA L SS    W  P+  P
Sbjct: 81  QRPQTWA---DCVTWAYQHWHTQYSHNIQQLLHNFPPAQLTSSGALFWSGPKRCP 132

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>ENV2_MOUSE (P11370) Retrovirus-related Env polyprotein from Fv-4 locus|
          Length = 679

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 28/118 (23%), Positives = 43/118 (36%), Gaps = 26/118 (22%)
 Frame = +2

Query: 89  PTATRTRKTKSNHVYTKQIQEQIPTTWACHSHCMRWY---LTHAEWRTSHSW-------- 235
           PT++    T SN++ + Q  +       C+   +R+         W T H W        
Sbjct: 187 PTSSWDYITVSNNLSSPQAPKACKNNGWCNPLVVRFTGPGKRATSWTTGHEWGLRLYISG 246

Query: 236 -------------SSVGPLSP--PAPLRSSWRRPRGTPRERPLPGTSSAGSGTRHTPP 364
                        + +GP  P  P P+ S  R P      RP P ++S  +G   TPP
Sbjct: 247 HDPGLTFGIRLRITDLGPRVPIGPNPVLSDQRPPSRPVPARPPPPSNSTPTGDPLTPP 304

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>NMDE4_HUMAN (O15399) Glutamate [NMDA] receptor subunit epsilon 4 precursor|
            (N-methyl D-aspartate receptor subtype 2D) (NR2D)
            (NMDAR2D) (EB11)
          Length = 1336

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +2

Query: 254  SPPAPLRSSWRRPRGTPRERPLPGTSSAGSG 346
            SPPAP R  W  PR  P  +PL G  + G+G
Sbjct: 1054 SPPAPAR--W--PRSDPESQPLLGPGAGGAG 1080

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>IASPP_HUMAN (Q8WUF5) RelA-associated inhibitor (Inhibitor of ASPP protein)|
           (Protein iASPP) (PPP1R13B-like protein)
           (NFkB-interacting protein 1)
          Length = 828

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = +2

Query: 230 SWSSVG--PLSPPAPLRSSWRRPRGTPRERPLP 322
           SW  V   P+ P +P      +PRG PR+RP+P
Sbjct: 345 SWQPVSRIPMPPSSP------QPRGAPRQRPIP 371

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>MYO15_HUMAN (Q9UKN7) Myosin-15 (Myosin XV) (Unconventional myosin-15)|
          Length = 3530

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +2

Query: 203  THAEWRTSHSWSSVGPLSPP-APLRSSWRRPRGTPRERPLPG 325
            T A W   H W ++   + P AP+R+    P+G  R +  PG
Sbjct: 1071 TRATWPPWHRWGTLPQAAAPLAPIRAPEPLPKGGERRQAAPG 1112

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>I17RC_HUMAN (Q8NAC3) Interleukin-17 receptor C precursor (IL-17 receptor C)|
           (IL-17RC) (Interleukin-17 receptor-like protein)
           (IL-17RL) (Interleukin-17 receptor homolog) (IL17Rhom)
          Length = 791

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 16/51 (31%), Positives = 19/51 (37%)
 Frame = +2

Query: 179 SHCMRWYLTHAEWRTSHSWSSVGPLSPPAPLRSSWRRPRGTPRERPLPGTS 331
           +H   W        T  SW    P S PA     WR P G P +  +P  S
Sbjct: 367 AHQNLWQAARLRLLTLQSWLLDAPCSLPAEAALCWRAPGGDPCQPLVPPLS 417

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>IASPP_MOUSE (Q5I1X5) RelA-associated inhibitor (Inhibitor of ASPP protein)|
           (Protein iASPP) (PPP1R13B-like protein)
           (NFkB-interacting protein 1)
          Length = 824

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = +2

Query: 230 SWSSVG--PLSPPAPLRSSWRRPRGTPRERPLP 322
           SW  V   P+ P +P      +PR TPR+RP+P
Sbjct: 344 SWQPVSRIPMPPSSP------QPRSTPRQRPIP 370

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>ARHG1_HUMAN (Q92888) Rho guanine nucleotide exchange factor 1 (p115-RhoGEF)|
           (p115RhoGEF) (115 kDa guanine nucleotide exchange
           factor) (Sub1.5)
          Length = 912

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = +2

Query: 239 SVGPLSPPAPLRSSWRRPRGTPRERPLPGTSSAGSGTRHTPP 364
           + G L  PAP      RP  +    PL  +S  G+G R T P
Sbjct: 758 TAGSLKVPAPASRPKPRPSPSSTREPLLSSSENGNGGRETSP 799

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>FOG1_HUMAN (Q8IX07) Zinc finger protein ZFPM1 (Zinc finger protein multitype|
           1) (Friend of GATA protein 1) (Friend of GATA-1) (FOG-1)
          Length = 1004

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
 Frame = +2

Query: 248 PLSPPAPLRSSWRRPR--GTPRERPLPGTSSAGSGTRHTP 361
           P +PP P R+   +P     PR  P PG    G+G   TP
Sbjct: 613 PKAPPGPARAPPGQPAEPDAPRSSPGPGAREEGAGGAATP 652

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>ICP4_HHV11 (P08392) Trans-acting transcriptional protein ICP4 (Transcriptional|
            activator IE175) (Alpha-4 protein)
          Length = 1298

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 9/49 (18%)
 Frame = +2

Query: 245  GPLSPPAPLR--SSWRRPRGTPRE-------RPLPGTSSAGSGTRHTPP 364
            GPL    PLR  ++W R    P +        PLPG   AG G    PP
Sbjct: 904  GPLRASGPLRRMAAWMRQIPDPEDVRVVVLYSPLPGEDLAGGGASGGPP 952

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>PKHA4_HUMAN (Q9H4M7) Pleckstrin homology domain-containing family A member 4|
           (Phosphoinositol 3-phosphate-binding protein 1) (PEPP-1)
          Length = 779

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 21/52 (40%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = +2

Query: 212 EWRTSHSWSSVGPLS-PPAPLRSSWRRPRGTPRERP-LPGTSSAGSGTRHTP 361
           + R + S     PLS PP+PL  S  RPR  P  RP  P   +A     HTP
Sbjct: 223 QMRRARSPDLFTPLSRPPSPL--SLPRPRSAPARRPPAPSGDTAPPARPHTP 272

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>XKR6_HUMAN (Q5GH73) XK-related protein 6|
          Length = 641

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = +2

Query: 167 WACHSHCMRWYLTHAEWRTSHSWSSVGPLSPPAPLRSSWRRPRGTPRERPLP 322
           W C S C+R  L     R++ +     PL PPA    + R+P      RP P
Sbjct: 67  WGCRSACLRSLLGRKPRRSAAADGGDQPLQPPA-APGAGRQPPTPSAARPEP 117

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>SYI_PYRAE (Q8ZWU4) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase) (IleRS)
          Length = 981

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = +2

Query: 68  YKG---LDLDPTATRTRKTKSNHVYTKQIQEQIPTTWACHS 181
           YKG    D+D   TR  ++K   V+ ++I+ + P  W C S
Sbjct: 367 YKGKHVYDVDKEVTRDLRSKGLLVFEEKIRHEYPHCWRCGS 407

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>GP153_HUMAN (Q6NV75) Probable G-protein coupled receptor 153 (G-protein coupled|
           receptor PGR1)
          Length = 609

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +2

Query: 203 THAEWRTSHSWSSVGPLSPPAPLRSSWRRPRGTPRERPLPGTSSAGS 343
           + A  R++ S  S+ P +  +  R +   P G+PR RP PG  SA +
Sbjct: 450 SRARRRSAESLLSLRPSALDSGPRGARDSPPGSPRRRPGPGPRSASA 496

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>GP153_MOUSE (Q8K0Z9) Probable G-protein coupled receptor 153 (G-protein coupled|
           receptor PGR1)
          Length = 631

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +2

Query: 218 RTSHSWSSVGPLSPPAPLRSSWRRPRGTPRERPLPGTSSA 337
           R++ S  S+ P S     R +   P G+PR RP PG  SA
Sbjct: 478 RSAESLLSLQPSSLDGGPRHAQDSPPGSPRRRPGPGARSA 517

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>YRR2_CAEEL (Q09345) Hypothetical protein R144.2|
          Length = 823

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 9/71 (12%)
 Frame = +2

Query: 167 WACHSHCMRWYLTHAEWRTSHSWSSVGPLSPPAPLRSSWRRPRGTPR---------ERPL 319
           W  H   M W++     R   + S+  P     P  S+W  PR +           E PL
Sbjct: 693 WQDH---MDWHVKQNLARHGSNNSAAVPYRQWYPSTSTWLTPRASDETNEQEADKPEEPL 749

Query: 320 PGTSSAGSGTR 352
           PG +S+G  T+
Sbjct: 750 PGVASSGVKTK 760

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>AMY_STRTL (P27350) Alpha-amylase precursor (EC 3.2.1.1) (1,4-alpha-D-glucan|
           glucanohydrolase)
          Length = 460

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -1

Query: 353 ASFLSQPKTCPAAGARVVCPVVDAKKNAAAPVGRVAPHYSSY 228
           A+F S   TC AAG +VV   V    +A +  G     Y+ Y
Sbjct: 98  AAFRSMVNTCHAAGVKVVVDTVINHMSAGSGTGTGGSSYTKY 139

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>MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, tracheobronchial)|
            (High molecular weight salivary mucin MG1) (Sublingual
            gland mucin)
          Length = 5703

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 24/95 (25%), Positives = 34/95 (35%), Gaps = 5/95 (5%)
 Frame = +2

Query: 89   PTATRTRKTKSNHVYTKQIQEQIPTTWACHSHCM--RWYLTHAEWRTSHS-WSSVGPLSP 259
            P    T  T             +PT W   +  +    ++T     TSH+  ++ G   P
Sbjct: 3415 PPVPNTTATTHGRSLPPSSPHTVPTAWTSATSGILGTTHITEPSTGTSHTPAATTGTTQP 3474

Query: 260  PAPLRSSWRRPRGTPRERPLPGTSSAG--SGTRHT 358
              P  SS      T    P PGT++ G   GT  T
Sbjct: 3475 STPALSSPHPSSRTTESPPSPGTTTPGHTRGTSRT 3509

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>HYPF_AZOVI (P40596) Carbamoyltransferase hypF (EC 2.1.3.-) (Carbamoyl|
           phosphate-converting enzyme hypF) ([NiFe]-hydrogenase
           maturation factor hypF) (Hydrogenase maturation protein
           hypF)
          Length = 776

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -1

Query: 347 FLSQPKTCPAAGARVVCPVVDAKKNAAAPVGR 252
           F +QP  CPA G R+ C     ++ +  P+ R
Sbjct: 178 FHAQPIACPACGPRLCCEDASGRRLSGDPIER 209

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>S6A14_MOUSE (Q9JMA9) Sodium- and chloride-dependent neutral and basic amino|
           acid transporter B(0+) (Amino acid transporter ATB0+)
           (Colonic system B0+ amino acid transporter CATB0+)
           (Solute carrier family 6 member 14)
          Length = 638

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +3

Query: 171 HVIPTACAGTSLMQSGVRHIAGVVWGHSPHR 263
           H+I   CAG  ++ + +  IAG++W +  +R
Sbjct: 471 HLIDHFCAGWGILIAAILEIAGIIWIYGGNR 501

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>FOXN1_HUMAN (O15353) Forkhead box protein N1 (Transcription factor winged-helix|
           nude)
          Length = 648

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +2

Query: 251 LSPPAPLRSSWRRPRGTPRERPLPGTSSAGSGTRHTPP 364
           L+PP P +  + +P G    R  PGT        HTPP
Sbjct: 462 LAPPGPPQPLFPQPDGHLELRAQPGTPQDSPLPAHTPP 499

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>VP13B_MOUSE (Q80TY5) Vacuolar protein sorting 13B (Cohen syndrome protein 1|
           homolog) (Fragment)
          Length = 1603

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +2

Query: 161 TTWACHSHCMRWYLTHAEWRTSHSWSSVGPLSP 259
           T W   S CM +   H E+R  H    +G  SP
Sbjct: 55  TPWFVPSLCMSFQFAHLEFRLCHHLDQLGTASP 87

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>RAII_RHIET (O54451) Autoinducer synthesis protein raiI|
          Length = 212

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = +2

Query: 83  LDPTATRTRKTKSNHVYTKQIQEQIPTTWACHSHCM 190
           L  T     K++  H + + I    PTTW C   C+
Sbjct: 72  LPTTGATMLKSEFRHFFDQPIDVDSPTTWECTRFCL 107

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>MYBPH_CHICK (Q05623) Myosin-binding protein H (MyBP-H) (H-protein) (86 kDa|
           protein)
          Length = 537

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
 Frame = +2

Query: 218 RTSHSWSSVGPLSPPAPLRSSWRRPRGTPRERPLPGTSSAGSGT---RHTPP 364
           +T+ + +   P +  AP  +S + P   P+E+P P      + T    H PP
Sbjct: 4   KTAPAAAKKAPAAKKAPAPASKKAPEPAPKEKPAPTPKEGHAPTPKEEHAPP 55

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>SUR2_CAEEL (Q10669) Protein sur-2|
          Length = 1587

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +2

Query: 56   QHNTYKGLDLDPTATRTRKTKSNHVYTKQIQEQIP 160
            QH+T     +D +  +T + +SNH   +Q+Q QIP
Sbjct: 1453 QHHTSTHQMMDTSQHQTIQQQSNHPTQQQLQHQIP 1487

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>ZITB_SALTY (Q8ZQT3) Zinc transporter zitB|
          Length = 312

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 13/34 (38%), Positives = 14/34 (41%)
 Frame = +1

Query: 244 GATLPTGAAAFFLASTTGHTTRAPAAGHVFGWLR 345
           G  L   AA  F       + R P   H FGWLR
Sbjct: 52  GHMLTDAAALLFALLAVQFSRRPPTVRHTFGWLR 85

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>ZITB_SALTI (Q8Z8B6) Zinc transporter zitB|
          Length = 312

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 13/34 (38%), Positives = 14/34 (41%)
 Frame = +1

Query: 244 GATLPTGAAAFFLASTTGHTTRAPAAGHVFGWLR 345
           G  L   AA  F       + R P   H FGWLR
Sbjct: 52  GHMLTDAAALLFALLVVQFSRRPPTVRHTFGWLR 85

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>CI047_HUMAN (Q6ZRZ4) Protein C9orf47 precursor|
          Length = 202

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 290 PRGTPRERPLPGTSSAGSGTR 352
           PRG    +P+PGT +  SGTR
Sbjct: 79  PRGLRPRKPVPGTGNRDSGTR 99

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>PALI_DEBHA (Q6BNJ2) pH-response regulator protein palI/RIM9|
          Length = 365

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -2

Query: 202 EVPAHAVGMTCPRRRYLLLYLFGVHVIAFCF 110
           E P  A      R RY++  L  VH++ FCF
Sbjct: 83  EYPDFAAAELPSRARYVISKLLVVHIVGFCF 113

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>GLTL1_MOUSE (Q9JJ61) Putative polypeptide|
           N-acetylgalactosaminyltransferase-like protein 1 (EC
           2.4.1.41) (Protein-UDP
           acetylgalactosaminyltransferase-like protein 1)
           (UDP-GalNAc:polypeptide
           N-acetylgalactosaminyltransferase-like protein 1)
           (Polypeptide G
          Length = 558

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 126 TCTPNKYKSKYRRRGHVIPTACAGTSL 206
           TC P + K K+RRRG  I  + +G  L
Sbjct: 505 TCNPKEGKQKWRRRGSFIQHSVSGLCL 531

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>POLG_HRV89 (P07210) Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat|
            protein VP2 (P1B); Coat protein VP3 (P1C); Coat protein
            VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core protein
            P2A); Core protein P2B; Core protein P2C; Core protein
            P3A; Genome
          Length = 2163

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 144  YKSKYRRRGHVIPTACAGTSLMQSGVRHI 230
            YKSKY      +P+ CAGTS+  + + +I
Sbjct: 1977 YKSKYYEVEGGMPSGCAGTSIFNTIINNI 2005

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>MYCB_RAT (P15063) Protein B-Myc|
          Length = 168

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +2

Query: 248 PLSPPAPLRSSWRRPRGTPRERPLPG 325
           P  PPAP    W++    P  RP PG
Sbjct: 36  PPQPPAPSEDIWKKFELLPTPRPSPG 61

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>DCAM_DROME (P91931) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)|
           (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine
           decarboxylase alpha chain; S-adenosylmethionine
           decarboxylase beta chain]
          Length = 347

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
 Frame = -1

Query: 365 PAECASFLSQPKTCPAAGARVVCPVVDAKKNAAAPVGRVAPH--YSSYVTYA-TLHE*GT 195
           P +C   L   K   A G  VV  +  ++KN   P  ++ PH  ++  VTY  ++   G 
Sbjct: 85  PLKCLGQLL--KLAEANGYNVVADLFYSRKNFTRPEAQITPHQGFTEEVTYLDSIFPNGR 142

Query: 194 SACSGN 177
           S C G+
Sbjct: 143 SYCLGS 148

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>MUCDL_MOUSE (Q8VHF2) Mucin and cadherin-like protein precursor|
           (Mu-protocadherin)
          Length = 831

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +2

Query: 248 PLSPPAPLRSSWRRPRGTPRERPLPGTSSAGS 343
           PL PP+P+ SS   P  TP   P P   ++GS
Sbjct: 716 PLRPPSPMSSSPTPPSSTP---PSPQPKASGS 744

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>Y192_WIGBR (Q8D309) UPF0243 zinc-binding protein WIGBR1920|
          Length = 48

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 149 LVFVWCTRDCFLFSLYVWLSG 87
           L F +C++ C +  LY W+SG
Sbjct: 23  LFFPFCSKKCKIIDLYQWISG 43

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>GUNA_XANCP (P19487) Major extracellular endoglucanase precursor (EC 3.2.1.4)|
           (Endo-1,4-beta-glucanase) (Cellulase)
          Length = 484

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = +2

Query: 233 WSSVGPLSP-PAPLRSSWRRPRGTPRERPLPGTSS 334
           W + G  +P P P  +    P  TP   P PGTS+
Sbjct: 369 WGTAGNTTPTPTPTPTPTPTPTPTPTPTPTPGTST 403

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>CO9A3_CHICK (P32017) Collagen alpha-3(IX) chain precursor|
          Length = 675

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 15/41 (36%), Positives = 18/41 (43%)
 Frame = +2

Query: 239 SVGPLSPPAPLRSSWRRPRGTPRERPLPGTSSAGSGTRHTP 361
           ++GP  PP P       P G P    LPG    G+G R  P
Sbjct: 101 ALGPAGPPGPAGKGLPGPPGPPGPSGLPG----GNGFRGPP 137

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>DPOL_HHV21 (P07918) DNA polymerase (EC 2.7.7.7)|
          Length = 1240

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +2

Query: 254  SPPAPLRSSWRRPRGTPRERPLPGTSS 334
            +PPA L S  +RPR TP     PG +S
Sbjct: 1111 APPAALPSPAKRPRETPSHADPPGGAS 1137

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>FUTSC_DROME (Q9W596) Microtubule-associated protein futsch|
          Length = 5412

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 21/74 (28%), Positives = 31/74 (41%)
 Frame = +2

Query: 140  QIQEQIPTTWACHSHCMRWYLTHAEWRTSHSWSSVGPLSPPAPLRSSWRRPRGTPRERPL 319
            ++++ +PTT A  +             T+ + SS G L  P      W +P G P   PL
Sbjct: 5207 EVEQAVPTTTAVTAS------------TTATASSTGAL--PKDRLEEWGKPLGLPSPAPL 5252

Query: 320  PGTSSAGSGTRHTP 361
            P     G+  R TP
Sbjct: 5253 P--VEGGADIRTTP 5264

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>DPOL_HHV1K (P04292) DNA polymerase (EC 2.7.7.7)|
          Length = 1235

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +2

Query: 254  SPPAPLRSSWRRPRGTPRERPLPGTSS 334
            +PPA L S  +RPR TP     PG +S
Sbjct: 1106 APPAALPSPAKRPRETPSHADPPGGAS 1132

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>NMDE4_RAT (Q62645) Glutamate [NMDA] receptor subunit epsilon 4 precursor|
            (N-methyl D-aspartate receptor subtype 2D) (NR2D)
            (NMDAR2D)
          Length = 1323

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = +2

Query: 254  SPPAPLRSSWRRPRGTPRERPLPGTSSAG--SGTRHTPP 364
            SPPAP R  W  PR  P  +PL G  + G  +G    PP
Sbjct: 1049 SPPAPSR--W--PRSDPESQPLLGGGAGGPSAGAPTAPP 1083

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>NMDE4_MOUSE (Q03391) Glutamate [NMDA] receptor subunit epsilon 4 precursor|
            (N-methyl D-aspartate receptor subtype 2D) (NR2D)
            (NMDAR2D)
          Length = 1323

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = +2

Query: 254  SPPAPLRSSWRRPRGTPRERPLPGTSSAG--SGTRHTPP 364
            SPPAP R  W  PR  P  +PL G  + G  +G    PP
Sbjct: 1049 SPPAPSR--W--PRSDPESQPLLGGGAGGPSAGAPTAPP 1083

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>CPSF6_XENLA (Q6DDW4) Cleavage and polyadenylation specificity factor 6|
          Length = 548

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 15/39 (38%), Positives = 17/39 (43%)
 Frame = +2

Query: 248 PLSPPAPLRSSWRRPRGTPRERPLPGTSSAGSGTRHTPP 364
           P+ PP P       P G P   PLPG  + G   R  PP
Sbjct: 241 PMCPPGPPGPPGPPPPGQPLPPPLPGPPNRGE--RPPPP 277

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>MYCB_MOUSE (Q6P8Z1) Protein B-Myc|
          Length = 170

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +2

Query: 248 PLSPPAPLRSSWRRPRGTPRERPLPG 325
           P  PPAP    W++    P  RP PG
Sbjct: 37  PPQPPAPSEDIWKKFELLPTPRPSPG 62


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,013,455
Number of Sequences: 219361
Number of extensions: 1243569
Number of successful extensions: 4232
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 3977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4222
length of database: 80,573,946
effective HSP length: 97
effective length of database: 59,295,929
effective search space used: 1423102296
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result