Clone Name | rbaet99g06 |
---|---|
Clone Library Name | barley_pub |
>gb|AC092867.7| Homo sapiens 12p BAC RP11-100C20 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 195583 Score = 42.1 bits (21), Expect = 0.51 Identities = 21/21 (100%) Strand = Plus / Minus Query: 102 atttcactgacatataaatgt 122 ||||||||||||||||||||| Sbjct: 131025 atttcactgacatataaatgt 131005
>gb|AC023796.22| Homo sapiens 12p BAC RP11-625L16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 173342 Score = 42.1 bits (21), Expect = 0.51 Identities = 21/21 (100%) Strand = Plus / Minus Query: 102 atttcactgacatataaatgt 122 ||||||||||||||||||||| Sbjct: 154854 atttcactgacatataaatgt 154834
>gb|AC114671.14| Mus musculus chromosome 5, clone RP24-199D21, complete sequence Length = 172228 Score = 40.1 bits (20), Expect = 2.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 110 gacatataaatgtatatcat 129 |||||||||||||||||||| Sbjct: 42812 gacatataaatgtatatcat 42831
>gb|AC126799.3| Mus musculus BAC clone RP24-388B22 from chromosome 13, complete sequence Length = 168873 Score = 40.1 bits (20), Expect = 2.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 73 ttgtatgtgttgtacagaatcctg 96 |||| ||||||||||||||||||| Sbjct: 13917 ttgtttgtgttgtacagaatcctg 13894
>emb|BX571813.8| Zebrafish DNA sequence from clone DKEY-14O6 in linkage group 3, complete sequence Length = 233901 Score = 40.1 bits (20), Expect = 2.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 77 atgtgttgtacagaatcctg 96 |||||||||||||||||||| Sbjct: 192740 atgtgttgtacagaatcctg 192759
>emb|BX537137.13| Zebrafish DNA sequence from clone DKEYP-87D1 in linkage group 20 Contains two novel genes and two CpG islands, complete sequence Length = 200339 Score = 40.1 bits (20), Expect = 2.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 77 atgtgttgtacagaatcctg 96 |||||||||||||||||||| Sbjct: 36576 atgtgttgtacagaatcctg 36595
>gb|AC093788.3| Homo sapiens BAC clone RP11-218F10 from 4, complete sequence Length = 160853 Score = 40.1 bits (20), Expect = 2.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 88 agaatcctgcatatatttca 107 |||||||||||||||||||| Sbjct: 30086 agaatcctgcatatatttca 30105
>gb|AC156609.8| Mus musculus chromosome 15, clone RP23-56E21, complete sequence Length = 118659 Score = 40.1 bits (20), Expect = 2.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 cactgacatataaatgtata 125 |||||||||||||||||||| Sbjct: 22343 cactgacatataaatgtata 22324
>gb|AC121135.9| Mus musculus chromosome 18, clone RP23-328A22, complete sequence Length = 189515 Score = 40.1 bits (20), Expect = 2.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 101 tatttcactgacatataaat 120 |||||||||||||||||||| Sbjct: 44644 tatttcactgacatataaat 44625
>emb|CT025577.11| Mouse DNA sequence from clone RP24-172I18 on chromosome 12, complete sequence Length = 143997 Score = 40.1 bits (20), Expect = 2.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 96 gcatatatttcactgacata 115 |||||||||||||||||||| Sbjct: 72567 gcatatatttcactgacata 72548
>gb|AC005325.1|AC005325 Homo sapiens chromosome 17, clone hRPK.60_A_24, complete sequence Length = 165228 Score = 40.1 bits (20), Expect = 2.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 tcatcttgtatgtgttgtac 87 |||||||||||||||||||| Sbjct: 68840 tcatcttgtatgtgttgtac 68821
>gb|AE014843.1| Plasmodium falciparum 3D7 chromosome 11 section 8 of 8 of the complete sequence Length = 271546 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 111 acatataaatgtatatcat 129 ||||||||||||||||||| Sbjct: 75487 acatataaatgtatatcat 75505
>gb|AC138320.12| Mus musculus chromosome 5, clone RP23-181I1, complete sequence Length = 230584 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 113 atataaatgtatatcatgc 131 ||||||||||||||||||| Sbjct: 120380 atataaatgtatatcatgc 120362
>gb|AC186150.1| Ornithorhynchus anatinus chromosome UNK clone OABb-264K6, complete sequence Length = 149168 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 100 atatttcactgacatataa 118 ||||||||||||||||||| Sbjct: 10375 atatttcactgacatataa 10393
>gb|AY261364.1| African swine fever virus isolate Tengani 62, complete genome Length = 185689 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 45 tgcaaaacccagacgcaaa 63 ||||||||||||||||||| Sbjct: 97180 tgcaaaacccagacgcaaa 97162
>emb|Z81511.1|CEF21F12 Caenorhabditis elegans Cosmid F21F12, complete sequence Length = 28078 Score = 38.2 bits (19), Expect = 7.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 66 tatcatcttgtatgtgttgtaca 88 ||||||| ||||||||||||||| Sbjct: 19813 tatcatcatgtatgtgttgtaca 19791
>gb|AC126936.4| Mus musculus BAC clone RP24-196L14 from chromosome 16, complete sequence Length = 177785 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 111 acatataaatgtatatcat 129 ||||||||||||||||||| Sbjct: 76107 acatataaatgtatatcat 76089
>gb|AC121793.3| Mus musculus BAC clone RP23-407B23 from chromosome 9, complete sequence Length = 194815 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 18 actgtgagctgagtgagag 36 ||||||||||||||||||| Sbjct: 41144 actgtgagctgagtgagag 41162
>ref|XM_651789.1| Entamoeba histolytica HM-1:IMSS Beige/BEACH domain protein, putative (7.t00041) partial mRNA Length = 7095 Score = 38.2 bits (19), Expect = 7.9 Identities = 25/27 (92%) Strand = Plus / Minus Query: 97 catatatttcactgacatataaatgta 123 ||||||||||| ||||| ||||||||| Sbjct: 4750 catatatttcattgacaaataaatgta 4724
>gb|AC160109.2| Mus musculus BAC clone RP24-169I22 from chromosome 13, complete sequence Length = 151819 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 16 acactgtgagctgagtgag 34 ||||||||||||||||||| Sbjct: 43029 acactgtgagctgagtgag 43011
>gb|AC105231.7| Homo sapiens chromosome 15, clone RP11-24F15, complete sequence Length = 145168 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 18 actgtgagctgagtgagag 36 ||||||||||||||||||| Sbjct: 100723 actgtgagctgagtgagag 100705
>gb|AC069021.9| Homo sapiens chromosome 10 clone RP11-254K3, complete sequence Length = 175464 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 105 tcactgacatataaatgta 123 ||||||||||||||||||| Sbjct: 173186 tcactgacatataaatgta 173204
>emb|CR382124.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome D of strain NRRL Y-1140 of Kluyveromyces lactis Length = 1715506 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 108 ctgacatataaatgtatat 126 ||||||||||||||||||| Sbjct: 40895 ctgacatataaatgtatat 40877
>gb|AF529169.1| Mus musculus DD1 protein mRNA, complete cds Length = 4249 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 18 actgtgagctgagtgagag 36 ||||||||||||||||||| Sbjct: 835 actgtgagctgagtgagag 853
>dbj|AB028947.2| Homo sapiens mRNA for KIAA1024 protein, partial cds Length = 6741 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 18 actgtgagctgagtgagag 36 ||||||||||||||||||| Sbjct: 488 actgtgagctgagtgagag 506
>gb|AC114761.3| Homo sapiens BAC clone RP11-354G23 from 4, complete sequence Length = 70709 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 87 cagaatcctgcatatattt 105 ||||||||||||||||||| Sbjct: 57684 cagaatcctgcatatattt 57702
>emb|BX000363.21| Zebrafish DNA sequence from clone CH211-10K11 in linkage group 5, complete sequence Length = 174403 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 14 aaacactgtgagctgagtg 32 ||||||||||||||||||| Sbjct: 32023 aaacactgtgagctgagtg 32041
>dbj|AK035830.1| Mus musculus 16 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:9630008M19 product:hypothetical protein, full insert sequence Length = 3697 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 18 actgtgagctgagtgagag 36 ||||||||||||||||||| Sbjct: 977 actgtgagctgagtgagag 995
>emb|BX088524.16| Zebrafish DNA sequence from clone CH211-215A9 in linkage group 10, complete sequence Length = 228624 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 106 cactgacatataaatgtat 124 ||||||||||||||||||| Sbjct: 128407 cactgacatataaatgtat 128425
>gb|AC154854.2| Mus musculus BAC clone RP23-23O4 from chromosome 16, complete sequence Length = 209970 Score = 38.2 bits (19), Expect = 7.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 63 acgtatcatcttgtatgtgttgt 85 ||||| ||||||||||||||||| Sbjct: 98474 acgtaacatcttgtatgtgttgt 98452
>dbj|AK173089.1| Mus musculus premature mRNA for mKIAA1024 protein Length = 3913 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 18 actgtgagctgagtgagag 36 ||||||||||||||||||| Sbjct: 1192 actgtgagctgagtgagag 1210
>gb|AC019178.7| Homo sapiens BAC clone RP11-235L22 from 2, complete sequence Length = 107330 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 98 atatatttcactgacatat 116 ||||||||||||||||||| Sbjct: 1045 atatatttcactgacatat 1027
>gb|AC139722.1| Homo sapiens BAC clone RP11-100N20 from 4, complete sequence Length = 116694 Score = 38.2 bits (19), Expect = 7.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 69 catcttgtatgtgttgtacagaa 91 ||||||| ||||||||||||||| Sbjct: 8982 catcttgcatgtgttgtacagaa 9004
>ref|NM_153509.1| Mus musculus cDNA sequence AF529169 (AF529169), mRNA Length = 4249 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 18 actgtgagctgagtgagag 36 ||||||||||||||||||| Sbjct: 835 actgtgagctgagtgagag 853
>ref|NM_015206.1| Homo sapiens KIAA1024 protein (KIAA1024), mRNA Length = 6741 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 18 actgtgagctgagtgagag 36 ||||||||||||||||||| Sbjct: 488 actgtgagctgagtgagag 506
>gb|AY538727.1| African swine fever virus isolate Tengani/60 9RL protein gene, partial cds Length = 213 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 45 tgcaaaacccagacgcaaa 63 ||||||||||||||||||| Sbjct: 10 tgcaaaacccagacgcaaa 28
>gb|AY274470.1| African swine fever virus isolate MOZ/1979 central variable region protein gene, partial cds Length = 273 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 45 tgcaaaacccagacgcaaa 63 ||||||||||||||||||| Sbjct: 10 tgcaaaacccagacgcaaa 28
>gb|AY274469.1| African swine fever virus isolate MOZ/8/94 central variable region protein gene, partial cds Length = 321 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 45 tgcaaaacccagacgcaaa 63 ||||||||||||||||||| Sbjct: 10 tgcaaaacccagacgcaaa 28
>gb|AY274468.1| African swine fever virus isolate MOZ/1/94 central variable region protein gene, partial cds Length = 321 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 45 tgcaaaacccagacgcaaa 63 ||||||||||||||||||| Sbjct: 10 tgcaaaacccagacgcaaa 28
>gb|AY274467.1| African swine fever virus isolate SPEC/265 central variable region protein gene, partial cds Length = 321 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 45 tgcaaaacccagacgcaaa 63 ||||||||||||||||||| Sbjct: 10 tgcaaaacccagacgcaaa 28
>gb|AY274465.1| African swine fever virus isolate MOZ/1960 central variable region protein gene, partial cds Length = 393 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 45 tgcaaaacccagacgcaaa 63 ||||||||||||||||||| Sbjct: 10 tgcaaaacccagacgcaaa 28
>emb|CT025734.8| Mouse DNA sequence from clone RP24-375J21 on chromosome 14, complete sequence Length = 187933 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 126 tcatgcccacaccactggc 144 ||||||||||||||||||| Sbjct: 123633 tcatgcccacaccactggc 123651
>emb|AL929106.5| Mouse DNA sequence from clone RP23-446N16 on chromosome 2, complete sequence Length = 130872 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 111 acatataaatgtatatcat 129 ||||||||||||||||||| Sbjct: 484 acatataaatgtatatcat 502
>emb|AL845262.3| Mouse DNA sequence from clone RP23-14N22 on chromosome 2, complete sequence Length = 207718 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 111 acatataaatgtatatcat 129 ||||||||||||||||||| Sbjct: 206202 acatataaatgtatatcat 206220 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,386,772 Number of Sequences: 3902068 Number of extensions: 1386772 Number of successful extensions: 106621 Number of sequences better than 10.0: 44 Number of HSP's better than 10.0 without gapping: 44 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 106522 Number of HSP's gapped (non-prelim): 99 length of query: 163 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 141 effective length of database: 17,147,199,772 effective search space: 2417755167852 effective search space used: 2417755167852 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)