ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet99g05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RAD54_CHICK (O12944) DNA repair and recombination protein RAD54-... 31 0.79
2ULT2_ARATH (Q8S8I2) Protein ULTRAPETALA2 31 1.0
3ULT1_ARATH (Q8GZA8) Protein ULTRAPETALA1 30 1.4
4SLBP_CAEEL (Q09599) Histone RNA hairpin-binding protein (Histone... 30 2.3
5YD29_SCHPO (Q10257) Hypothetical protein C56F8.09 in chromosome I 28 8.8
6HEMA_PTV10 (Q70KP1) Hemagglutinin-esterase homolog precursor (EC... 28 8.8

>RAD54_CHICK (O12944) DNA repair and recombination protein RAD54-like (EC|
           3.6.1.-) (RAD54 homolog) (Putative recombination factor
           GdRad54) (Fragment)
          Length = 733

 Score = 31.2 bits (69), Expect = 0.79
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = -1

Query: 119 EKERGRSKILRLRLRQKAGRSAASCTCFRSPF 24
           E+E G  +    + RQKAG  A S  C+RSPF
Sbjct: 9   EEEDGEWRPPATQKRQKAGSEAESADCYRSPF 40



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>ULT2_ARATH (Q8S8I2) Protein ULTRAPETALA2|
          Length = 228

 Score = 30.8 bits (68), Expect = 1.0
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -1

Query: 122 KEKERGRSKILRLRLRQKAGRSAASCTCFRSPFCR 18
           +E+ERG  K+ R   R  + +   SC CF    CR
Sbjct: 175 EEEERGSRKVFRGCTRSPSCKGCTSCVCFGCKLCR 209



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>ULT1_ARATH (Q8GZA8) Protein ULTRAPETALA1|
          Length = 237

 Score = 30.4 bits (67), Expect = 1.4
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -1

Query: 122 KEKERGRSKILRLRLRQKAGRSAASCTCFRSPFCR 18
           +E+ERG  K+ R   R  + +   SC CF    CR
Sbjct: 185 EEEERGSRKVYRGCTRSPSCKGCTSCVCFGCELCR 219



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>SLBP_CAEEL (Q09599) Histone RNA hairpin-binding protein (Histone|
           stem-loop-binding protein)
          Length = 367

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = +1

Query: 7   KTKPRQKGERKHVQDAAERPAFCRSLSLS 93
           K++ R+KG+ K  Q++  +P F RSL L+
Sbjct: 68  KSESRRKGQPKRAQNSQNKPKFVRSLELT 96



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>YD29_SCHPO (Q10257) Hypothetical protein C56F8.09 in chromosome I|
          Length = 318

 Score = 27.7 bits (60), Expect = 8.8
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +1

Query: 4  RKTKPRQKGERKHVQDAAER 63
          RK K R+KGERK+V D  E+
Sbjct: 23 RKEKKRKKGERKNVGDKGEK 42



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>HEMA_PTV10 (Q70KP1) Hemagglutinin-esterase homolog precursor (EC 3.1.1.53)|
           (HE)
          Length = 430

 Score = 27.7 bits (60), Expect = 8.8
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 93  TQA*TPAKGRPFSCILYMFPFSFLPGFCF 7
           TQ   P+    FSC  ++ PF ++ G CF
Sbjct: 194 TQFVLPSSSDGFSCTKHLVPFCYIDGGCF 222


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,150,919
Number of Sequences: 219361
Number of extensions: 296504
Number of successful extensions: 825
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 80,573,946
effective HSP length: 36
effective length of database: 72,676,950
effective search space used: 1744246800
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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