Clone Name | rbaet99g05 |
---|---|
Clone Library Name | barley_pub |
>gb|AC007467.4|AC007467 Drosophila melanogaster, chromosome 2L, region 38E-38F, BAC clone BACR07D17, complete sequence Length = 173422 Score = 42.1 bits (21), Expect = 0.57 Identities = 21/21 (100%) Strand = Plus / Plus Query: 2 aaagaaaaacaaaaccccggc 22 ||||||||||||||||||||| Sbjct: 57057 aaagaaaaacaaaaccccggc 57077
>ref|XM_318756.2| Anopheles gambiae str. PEST ENSANGP00000013183 (ENSANGG00000010694), partial mRNA Length = 945 Score = 42.1 bits (21), Expect = 0.57 Identities = 21/21 (100%) Strand = Plus / Plus Query: 49 gatgcagctgaacggccggcc 69 ||||||||||||||||||||| Sbjct: 435 gatgcagctgaacggccggcc 455
>gb|AE003668.5| Drosophila melanogaster chromosome 2L, section 77 of 83 of the complete sequence Length = 270158 Score = 42.1 bits (21), Expect = 0.57 Identities = 21/21 (100%) Strand = Plus / Plus Query: 2 aaagaaaaacaaaaccccggc 22 ||||||||||||||||||||| Sbjct: 46871 aaagaaaaacaaaaccccggc 46891
>gb|AC004759.1|AC004759 Drosophila melanogaster DNA sequence (P1s DS04217 (D56) and DS00582 (D85)), complete sequence Length = 142799 Score = 42.1 bits (21), Expect = 0.57 Identities = 21/21 (100%) Strand = Plus / Minus Query: 2 aaagaaaaacaaaaccccggc 22 ||||||||||||||||||||| Sbjct: 32480 aaagaaaaacaaaaccccggc 32460
>emb|BX927371.12| Zebrafish DNA sequence from clone DKEY-1C17 in linkage group 7, complete sequence Length = 154034 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 35 ggaaacatgtacaagatgca 54 |||||||||||||||||||| Sbjct: 129633 ggaaacatgtacaagatgca 129614
>gb|AC099337.2| Homo sapiens chromosome 1 clone RP11-365M20, complete sequence Length = 179350 Score = 40.1 bits (20), Expect = 2.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 112 tccttctccttgcgcgccgcgccg 135 ||||||||||||||| |||||||| Sbjct: 48230 tccttctccttgcgccccgcgccg 48207
>gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome Length = 3179300 Score = 40.1 bits (20), Expect = 2.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 2 aaagaaaaacaaaaccccggcaaa 25 |||||||||||| ||||||||||| Sbjct: 370266 aaagaaaaacaacaccccggcaaa 370243
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 117 ctccttgcgcgccgcgccgg 136 |||||||||||||||||||| Sbjct: 202235 ctccttgcgcgccgcgccgg 202216
>emb|AL928637.7| Zebrafish DNA sequence from clone CH211-227I6, complete sequence Length = 163121 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 35 ggaaacatgtacaagatgca 54 |||||||||||||||||||| Sbjct: 146258 ggaaacatgtacaagatgca 146239
>gb|AC132901.11| Mus musculus chromosome 13, clone RP24-282A18, complete sequence Length = 187090 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 2 aaagaaaaacaaaaccccg 20 ||||||||||||||||||| Sbjct: 120043 aaagaaaaacaaaaccccg 120061
>gb|AC133646.4| Mus musculus BAC clone RP23-254F11 from chromosome 18, complete sequence Length = 209764 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 164 caggaagaggcagaccgtg 182 ||||||||||||||||||| Sbjct: 67275 caggaagaggcagaccgtg 67257
>emb|BX015229.1|CNS08JWX Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAA22DF02 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 729 Score = 38.2 bits (19), Expect = 8.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 20 ggcaaaaaggagaacggaaacat 42 ||||||||||||| ||||||||| Sbjct: 636 ggcaaaaaggagaccggaaacat 614
>emb|BX014582.1|CNS08JEY Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAA21DG10 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 749 Score = 38.2 bits (19), Expect = 8.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 20 ggcaaaaaggagaacggaaacat 42 ||||||||||||| ||||||||| Sbjct: 653 ggcaaaaaggagaccggaaacat 631
>emb|BX014581.1|CNS08JEX Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAA21DG10 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 1021 Score = 38.2 bits (19), Expect = 8.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 20 ggcaaaaaggagaacggaaacat 42 ||||||||||||| ||||||||| Sbjct: 564 ggcaaaaaggagaccggaaacat 586
>emb|BX897700.1| Bartonella quintana str. Toulouse, complete genome Length = 1581384 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 20 ggcaaaaaggagaacggaa 38 ||||||||||||||||||| Sbjct: 1059590 ggcaaaaaggagaacggaa 1059572
>gb|AC087244.17| Homo sapiens 12 BAC RP11-444N1 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 187111 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 2 aaagaaaaacaaaaccccg 20 ||||||||||||||||||| Sbjct: 150483 aaagaaaaacaaaaccccg 150465
>emb|AL929104.3| Zebrafish DNA sequence from clone DKEY-61O11 in linkage group 14 Contains the 5' part of a novel gene similar to vertebrate XPNPEP2 (membrane bound X-prolyl aminopeptidase (aminopeptidase P) 2) and three CpG islands, complete sequence Length = 187365 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 26 aaggagaacggaaacatgt 44 ||||||||||||||||||| Sbjct: 44813 aaggagaacggaaacatgt 44831
>gb|AE006029.1| Caulobacter crescentus CB15 section 355 of 359 of the complete genome Length = 10213 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 119 ccttgcgcgccgcgccggc 137 ||||||||||||||||||| Sbjct: 4875 ccttgcgcgccgcgccggc 4857
>gb|AC157514.2| Mus musculus BAC clone RP24-281C16 from chromosome 9, complete sequence Length = 191880 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 1 gaaagaaaaacaaaacccc 19 ||||||||||||||||||| Sbjct: 49562 gaaagaaaaacaaaacccc 49544
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 105 acccctctccttctccttg 123 ||||||||||||||||||| Sbjct: 14991211 acccctctccttctccttg 14991193
>gb|AC083874.2|AC083874 Homo sapiens chromosome 7 clone RP11-792L21, complete sequence Length = 186281 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 2 aaagaaaaacaaaaccccg 20 ||||||||||||||||||| Sbjct: 21874 aaagaaaaacaaaaccccg 21856
>gb|AC009276.9|AC009276 Homo sapiens chromosome 7 clone RP11-239G19, complete sequence Length = 163631 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 2 aaagaaaaacaaaaccccg 20 ||||||||||||||||||| Sbjct: 90690 aaagaaaaacaaaaccccg 90672
>gb|AC154846.2| Mus musculus BAC clone RP23-45E1 from 14, complete sequence Length = 250542 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 2 aaagaaaaacaaaaccccg 20 ||||||||||||||||||| Sbjct: 103869 aaagaaaaacaaaaccccg 103887
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 105 acccctctccttctccttg 123 ||||||||||||||||||| Sbjct: 14945494 acccctctccttctccttg 14945476
>emb|AL731873.5|CNS08C8D Oryza sativa chromosome 12, . BAC OSJNBa0068D20 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 174521 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 105 acccctctccttctccttg 123 ||||||||||||||||||| Sbjct: 90636 acccctctccttctccttg 90654
>emb|CR382127.1| Yarrowia lipolytica chromosome A of strain CLIB122 of Yarrowia lipolytica Length = 2303261 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 42 tgtacaagatgcagctgaa 60 ||||||||||||||||||| Sbjct: 955104 tgtacaagatgcagctgaa 955122
>emb|AL671878.8| Mouse DNA sequence from clone RP23-184D5 on chromosome 4, complete sequence Length = 230395 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 103 cgacccctctccttctcct 121 ||||||||||||||||||| Sbjct: 133430 cgacccctctccttctcct 133448 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,270,087 Number of Sequences: 3902068 Number of extensions: 2270087 Number of successful extensions: 248603 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 27 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 248360 Number of HSP's gapped (non-prelim): 243 length of query: 182 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 160 effective length of database: 17,147,199,772 effective search space: 2743551963520 effective search space used: 2743551963520 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)