ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet99g05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC007467.4|AC007467 Drosophila melanogaster, chromosome 2L, r... 42 0.57
2ref|XM_318756.2| Anopheles gambiae str. PEST ENSANGP00000013183 ... 42 0.57
3gb|AE003668.5| Drosophila melanogaster chromosome 2L, section 77... 42 0.57
4gb|AC004759.1|AC004759 Drosophila melanogaster DNA sequence (P1s... 42 0.57
5emb|BX927371.12| Zebrafish DNA sequence from clone DKEY-1C17 in ... 40 2.3
6gb|AC099337.2| Homo sapiens chromosome 1 clone RP11-365M20, comp... 40 2.3
7gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome 40 2.3
8gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome 40 2.3
9emb|AL928637.7| Zebrafish DNA sequence from clone CH211-227I6, c... 40 2.3
10gb|AC132901.11| Mus musculus chromosome 13, clone RP24-282A18, c... 38 8.9
11gb|AC133646.4| Mus musculus BAC clone RP23-254F11 from chromosom... 38 8.9
12emb|BX015229.1|CNS08JWX Single read from an extremity of a full-... 38 8.9
13emb|BX014582.1|CNS08JEY Single read from an extremity of a full-... 38 8.9
14emb|BX014581.1|CNS08JEX Single read from an extremity of a full-... 38 8.9
15emb|BX897700.1| Bartonella quintana str. Toulouse, complete genome 38 8.9
16gb|AC087244.17| Homo sapiens 12 BAC RP11-444N1 (Roswell Park Can... 38 8.9
17emb|AL929104.3| Zebrafish DNA sequence from clone DKEY-61O11 in ... 38 8.9
18gb|AE006029.1| Caulobacter crescentus CB15 section 355 of 359 of... 38 8.9
19gb|AC157514.2| Mus musculus BAC clone RP24-281C16 from chromosom... 38 8.9
20dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 38 8.9
21gb|AC083874.2|AC083874 Homo sapiens chromosome 7 clone RP11-792L... 38 8.9
22gb|AC009276.9|AC009276 Homo sapiens chromosome 7 clone RP11-239G... 38 8.9
23gb|AC154846.2| Mus musculus BAC clone RP23-45E1 from 14, complet... 38 8.9
24gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 38 8.9
25emb|AL731873.5|CNS08C8D Oryza sativa chromosome 12, . BAC OSJNBa... 38 8.9
26emb|CR382127.1| Yarrowia lipolytica chromosome A of strain CLIB1... 38 8.9
27emb|AL671878.8| Mouse DNA sequence from clone RP23-184D5 on chro... 38 8.9

>gb|AC007467.4|AC007467 Drosophila melanogaster, chromosome 2L, region 38E-38F, BAC clone
             BACR07D17, complete sequence
          Length = 173422

 Score = 42.1 bits (21), Expect = 0.57
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 2     aaagaaaaacaaaaccccggc 22
             |||||||||||||||||||||
Sbjct: 57057 aaagaaaaacaaaaccccggc 57077



to top

>ref|XM_318756.2| Anopheles gambiae str. PEST ENSANGP00000013183
           (ENSANGG00000010694), partial mRNA
          Length = 945

 Score = 42.1 bits (21), Expect = 0.57
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 49  gatgcagctgaacggccggcc 69
           |||||||||||||||||||||
Sbjct: 435 gatgcagctgaacggccggcc 455



to top

>gb|AE003668.5| Drosophila melanogaster chromosome 2L, section 77 of 83 of the complete
             sequence
          Length = 270158

 Score = 42.1 bits (21), Expect = 0.57
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 2     aaagaaaaacaaaaccccggc 22
             |||||||||||||||||||||
Sbjct: 46871 aaagaaaaacaaaaccccggc 46891



to top

>gb|AC004759.1|AC004759 Drosophila melanogaster DNA sequence (P1s DS04217 (D56) and DS00582
             (D85)), complete sequence
          Length = 142799

 Score = 42.1 bits (21), Expect = 0.57
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 2     aaagaaaaacaaaaccccggc 22
             |||||||||||||||||||||
Sbjct: 32480 aaagaaaaacaaaaccccggc 32460



to top

>emb|BX927371.12| Zebrafish DNA sequence from clone DKEY-1C17 in linkage group 7, complete
              sequence
          Length = 154034

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 35     ggaaacatgtacaagatgca 54
              ||||||||||||||||||||
Sbjct: 129633 ggaaacatgtacaagatgca 129614



to top

>gb|AC099337.2| Homo sapiens chromosome 1 clone RP11-365M20, complete sequence
          Length = 179350

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 112   tccttctccttgcgcgccgcgccg 135
             ||||||||||||||| ||||||||
Sbjct: 48230 tccttctccttgcgccccgcgccg 48207



to top

>gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome
          Length = 3179300

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 2      aaagaaaaacaaaaccccggcaaa 25
              |||||||||||| |||||||||||
Sbjct: 370266 aaagaaaaacaacaccccggcaaa 370243



to top

>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome
          Length = 3551823

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 117    ctccttgcgcgccgcgccgg 136
              ||||||||||||||||||||
Sbjct: 202235 ctccttgcgcgccgcgccgg 202216



to top

>emb|AL928637.7| Zebrafish DNA sequence from clone CH211-227I6, complete sequence
          Length = 163121

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 35     ggaaacatgtacaagatgca 54
              ||||||||||||||||||||
Sbjct: 146258 ggaaacatgtacaagatgca 146239



to top

>gb|AC132901.11| Mus musculus chromosome 13, clone RP24-282A18, complete sequence
          Length = 187090

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 2      aaagaaaaacaaaaccccg 20
              |||||||||||||||||||
Sbjct: 120043 aaagaaaaacaaaaccccg 120061



to top

>gb|AC133646.4| Mus musculus BAC clone RP23-254F11 from chromosome 18, complete
             sequence
          Length = 209764

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 164   caggaagaggcagaccgtg 182
             |||||||||||||||||||
Sbjct: 67275 caggaagaggcagaccgtg 67257



to top

>emb|BX015229.1|CNS08JWX Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 3-PRIME end of
           clone FK0AAA22DF02 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 729

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 20  ggcaaaaaggagaacggaaacat 42
           ||||||||||||| |||||||||
Sbjct: 636 ggcaaaaaggagaccggaaacat 614



to top

>emb|BX014582.1|CNS08JEY Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 3-PRIME end of
           clone FK0AAA21DG10 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 749

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 20  ggcaaaaaggagaacggaaacat 42
           ||||||||||||| |||||||||
Sbjct: 653 ggcaaaaaggagaccggaaacat 631



to top

>emb|BX014581.1|CNS08JEX Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAA21DG10 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 1021

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 20  ggcaaaaaggagaacggaaacat 42
           ||||||||||||| |||||||||
Sbjct: 564 ggcaaaaaggagaccggaaacat 586



to top

>emb|BX897700.1| Bartonella quintana str. Toulouse, complete genome
          Length = 1581384

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 20      ggcaaaaaggagaacggaa 38
               |||||||||||||||||||
Sbjct: 1059590 ggcaaaaaggagaacggaa 1059572



to top

>gb|AC087244.17| Homo sapiens 12 BAC RP11-444N1 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 187111

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 2      aaagaaaaacaaaaccccg 20
              |||||||||||||||||||
Sbjct: 150483 aaagaaaaacaaaaccccg 150465



to top

>emb|AL929104.3| Zebrafish DNA sequence from clone DKEY-61O11 in linkage group 14
             Contains the 5' part of a novel gene similar to vertebrate
             XPNPEP2 (membrane bound X-prolyl aminopeptidase
             (aminopeptidase P) 2) and three CpG islands, complete
             sequence
          Length = 187365

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 26    aaggagaacggaaacatgt 44
             |||||||||||||||||||
Sbjct: 44813 aaggagaacggaaacatgt 44831



to top

>gb|AE006029.1| Caulobacter crescentus CB15 section 355 of 359 of the complete genome
          Length = 10213

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 119  ccttgcgcgccgcgccggc 137
            |||||||||||||||||||
Sbjct: 4875 ccttgcgcgccgcgccggc 4857



to top

>gb|AC157514.2| Mus musculus BAC clone RP24-281C16 from chromosome 9, complete sequence
          Length = 191880

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 1     gaaagaaaaacaaaacccc 19
             |||||||||||||||||||
Sbjct: 49562 gaaagaaaaacaaaacccc 49544



to top

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 105      acccctctccttctccttg 123
                |||||||||||||||||||
Sbjct: 14991211 acccctctccttctccttg 14991193



to top

>gb|AC083874.2|AC083874 Homo sapiens chromosome 7 clone RP11-792L21, complete sequence
          Length = 186281

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 2     aaagaaaaacaaaaccccg 20
             |||||||||||||||||||
Sbjct: 21874 aaagaaaaacaaaaccccg 21856



to top

>gb|AC009276.9|AC009276 Homo sapiens chromosome 7 clone RP11-239G19, complete sequence
          Length = 163631

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 2     aaagaaaaacaaaaccccg 20
             |||||||||||||||||||
Sbjct: 90690 aaagaaaaacaaaaccccg 90672



to top

>gb|AC154846.2| Mus musculus BAC clone RP23-45E1 from 14, complete sequence
          Length = 250542

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 2      aaagaaaaacaaaaccccg 20
              |||||||||||||||||||
Sbjct: 103869 aaagaaaaacaaaaccccg 103887



to top

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 105      acccctctccttctccttg 123
                |||||||||||||||||||
Sbjct: 14945494 acccctctccttctccttg 14945476



to top

>emb|AL731873.5|CNS08C8D Oryza sativa chromosome 12, . BAC OSJNBa0068D20 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 174521

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 105   acccctctccttctccttg 123
             |||||||||||||||||||
Sbjct: 90636 acccctctccttctccttg 90654



to top

>emb|CR382127.1| Yarrowia lipolytica chromosome A of strain CLIB122 of Yarrowia lipolytica
          Length = 2303261

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 42     tgtacaagatgcagctgaa 60
              |||||||||||||||||||
Sbjct: 955104 tgtacaagatgcagctgaa 955122



to top

>emb|AL671878.8| Mouse DNA sequence from clone RP23-184D5 on chromosome 4, complete
              sequence
          Length = 230395

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 103    cgacccctctccttctcct 121
              |||||||||||||||||||
Sbjct: 133430 cgacccctctccttctcct 133448


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,270,087
Number of Sequences: 3902068
Number of extensions: 2270087
Number of successful extensions: 248603
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 248360
Number of HSP's gapped (non-prelim): 243
length of query: 182
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 160
effective length of database: 17,147,199,772
effective search space: 2743551963520
effective search space used: 2743551963520
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
to top