Clone Name | rbaet99g03 |
---|---|
Clone Library Name | barley_pub |
>gb|AY506486.1| Triticum aestivum PXCW4-like gene, complete sequence Length = 2435 Score = 50.1 bits (25), Expect = 0.003 Identities = 25/25 (100%) Strand = Plus / Minus Query: 199 gtcaatcacgagttcaccttggagc 223 ||||||||||||||||||||||||| Sbjct: 1831 gtcaatcacgagttcaccttggagc 1807 Score = 40.1 bits (20), Expect = 2.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 92 aaatacacgtttcaagtgctggta 115 ||||||| |||||||||||||||| Sbjct: 1934 aaatacatgtttcaagtgctggta 1911
>gb|AY506485.1| Triticum aestivum PXCW3-like gene, complete sequence Length = 2466 Score = 50.1 bits (25), Expect = 0.003 Identities = 25/25 (100%) Strand = Plus / Minus Query: 199 gtcaatcacgagttcaccttggagc 223 ||||||||||||||||||||||||| Sbjct: 1861 gtcaatcacgagttcaccttggagc 1837 Score = 40.1 bits (20), Expect = 2.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 92 aaatacacgtttcaagtgctggta 115 ||||||| |||||||||||||||| Sbjct: 1965 aaatacatgtttcaagtgctggta 1942
>gb|AY506484.1| Triticum aestivum PXCW2-like gene, complete sequence Length = 2456 Score = 50.1 bits (25), Expect = 0.003 Identities = 25/25 (100%) Strand = Plus / Minus Query: 199 gtcaatcacgagttcaccttggagc 223 ||||||||||||||||||||||||| Sbjct: 1852 gtcaatcacgagttcaccttggagc 1828 Score = 40.1 bits (20), Expect = 2.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 92 aaatacacgtttcaagtgctggta 115 ||||||| |||||||||||||||| Sbjct: 1956 aaatacatgtttcaagtgctggta 1933
>gb|AY857755.1| Triticum monococcum peroxidase 1 (POX1) mRNA, complete cds Length = 1259 Score = 50.1 bits (25), Expect = 0.003 Identities = 85/103 (82%), Gaps = 4/103 (3%) Strand = Plus / Minus Query: 17 tgcctttgcatgggaaattgataattcgaccgttac---atgtgtagatgcacgcatgct 73 |||||||||||| |||| || ||||||| ||||| || ||| |||||| ||||| | Sbjct: 1175 tgcctttgcatgagaaagtgggaattcgattgttacataatatgtggatgcatgcatgat 1116 Query: 74 ttgctggtgcacgtacttaaa-tacacgtttcaagtgctggta 115 |||||| ||| ||||| |||| ||||| ||||||||||||||| Sbjct: 1115 ttgctgctgctcgtacataaactacacatttcaagtgctggta 1073 Score = 50.1 bits (25), Expect = 0.003 Identities = 31/33 (93%) Strand = Plus / Minus Query: 191 gctcgtgcgtcaatcacgagttcaccttggagc 223 |||||| ||||||||||||||||||| |||||| Sbjct: 994 gctcgtccgtcaatcacgagttcaccctggagc 962
>emb|X53675.1|TAPEROXIG Wheat (T. aesitvum) mRNA for peroxidase (EC 1.11.1.7) Length = 3240 Score = 50.1 bits (25), Expect = 0.003 Identities = 25/25 (100%) Strand = Plus / Minus Query: 199 gtcaatcacgagttcaccttggagc 223 ||||||||||||||||||||||||| Sbjct: 2543 gtcaatcacgagttcaccttggagc 2519 Score = 40.1 bits (20), Expect = 2.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 92 aaatacacgtttcaagtgctggta 115 ||||||| |||||||||||||||| Sbjct: 2647 aaatacatgtttcaagtgctggta 2624
>gb|AF387866.1| Triticum aestivum peroxidase (pxc1A) gene, pxc1A-2A allele, complete cds Length = 2458 Score = 50.1 bits (25), Expect = 0.003 Identities = 25/25 (100%) Strand = Plus / Minus Query: 199 gtcaatcacgagttcaccttggagc 223 ||||||||||||||||||||||||| Sbjct: 1855 gtcaatcacgagttcaccttggagc 1831 Score = 40.1 bits (20), Expect = 2.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 92 aaatacacgtttcaagtgctggta 115 ||||||| |||||||||||||||| Sbjct: 1959 aaatacatgtttcaagtgctggta 1936
>emb|AJ276227.1|HVU276227 Hordeum vulgare partial mRNA for peroxidase (prx8 gene) Length = 930 Score = 48.1 bits (24), Expect = 0.012 Identities = 33/36 (91%) Strand = Plus / Minus Query: 188 gtagctcgtgcgtcaatcacgagttcaccttggagc 223 ||||||||| |||| |||||||||||||| |||||| Sbjct: 930 gtagctcgtccgtcgatcacgagttcaccctggagc 895
>gb|AF078872.1|AF078872 Avena sativa cultivar Ogle peroxidase PXC6 precursor (pxc6) gene, complete cds Length = 1197 Score = 46.1 bits (23), Expect = 0.046 Identities = 23/23 (100%) Strand = Plus / Minus Query: 201 caatcacgagttcaccttggagc 223 ||||||||||||||||||||||| Sbjct: 1197 caatcacgagttcaccttggagc 1175
>gb|AF078871.1|AF078871 Avena sativa cultivar Ogle peroxidase PXC2 precursor (pxc2) gene, complete cds Length = 1191 Score = 46.1 bits (23), Expect = 0.046 Identities = 23/23 (100%) Strand = Plus / Minus Query: 201 caatcacgagttcaccttggagc 223 ||||||||||||||||||||||| Sbjct: 1191 caatcacgagttcaccttggagc 1169
>gb|AY857757.1| Triticum monococcum peroxidase 3 (POX3) mRNA, complete cds Length = 1295 Score = 44.1 bits (22), Expect = 0.18 Identities = 25/26 (96%) Strand = Plus / Minus Query: 198 cgtcaatcacgagttcaccttggagc 223 |||| ||||||||||||||||||||| Sbjct: 1012 cgtccatcacgagttcaccttggagc 987
>emb|X85228.1|TAPOX2 T.aestivum pox2 gene Length = 1658 Score = 44.1 bits (22), Expect = 0.18 Identities = 60/72 (83%), Gaps = 3/72 (4%) Strand = Plus / Minus Query: 47 cgttacatgtgtagatgcacgcatgctttgctggtgcacgtactt---aaatacacgttt 103 |||||||| || |||||| ||||| ||||||| ||||| | ||| ||||||||| || Sbjct: 1550 cgttacatacgttgatgcatgcatgatttgctgctgcacatgctttgaaaatacacgatt 1491 Query: 104 caagtgctggta 115 |||||||||||| Sbjct: 1490 caagtgctggta 1479 Score = 44.1 bits (22), Expect = 0.18 Identities = 25/26 (96%) Strand = Plus / Minus Query: 198 cgtcaatcacgagttcaccttggagc 223 |||| ||||||||||||||||||||| Sbjct: 1412 cgtccatcacgagttcaccttggagc 1387
>emb|X58396.1|HVPEROXI Barley mRNA for peroxidase (EC=1.11.1.7) Length = 1285 Score = 44.1 bits (22), Expect = 0.18 Identities = 31/34 (91%) Strand = Plus / Minus Query: 190 agctcgtgcgtcaatcacgagttcaccttggagc 223 ||||||| |||| |||||||||||||| |||||| Sbjct: 1029 agctcgtccgtcgatcacgagttcaccctggagc 996 Score = 42.1 bits (21), Expect = 0.72 Identities = 53/61 (86%), Gaps = 2/61 (3%) Strand = Plus / Minus Query: 56 tgtagatgcacgcatgctttgctggtgcacgtacttaaa-tacacgttt-caagtgctgg 113 |||||||||| ||||| ||||||| || |||||||||| || |||||| |||||||||| Sbjct: 1163 tgtagatgcatgcatgatttgctgccgctcgtacttaaaatagacgttttcaagtgctgg 1104 Query: 114 t 114 | Sbjct: 1103 t 1103
>gb|L36093.1|BLYPRX Barley peroxidase mRNA, complete cds Length = 1262 Score = 44.1 bits (22), Expect = 0.18 Identities = 31/34 (91%) Strand = Plus / Minus Query: 190 agctcgtgcgtcaatcacgagttcaccttggagc 223 ||||||| |||| |||||||||||||| |||||| Sbjct: 1029 agctcgtccgtcgatcacgagttcaccctggagc 996
>emb|X56011.1|TAPERO Wheat mRNA for peroxidase Length = 1247 Score = 42.1 bits (21), Expect = 0.72 Identities = 56/65 (86%), Gaps = 2/65 (3%) Strand = Plus / Minus Query: 53 atgtgtagatgcacgcatgctttgctggtgcacgtac-ttaaatacac-gtttcaagtgc 110 ||||||||||||| ||||| ||||||| | | ||||| | |||||||| |||||||| || Sbjct: 1170 atgtgtagatgcatgcatgatttgctgctactcgtacataaaatacacggtttcaagagc 1111 Query: 111 tggta 115 ||||| Sbjct: 1110 tggta 1106 Score = 40.1 bits (20), Expect = 2.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 200 tcaatcacgagttcaccttggagc 223 ||||||||||||||||| |||||| Sbjct: 1028 tcaatcacgagttcaccctggagc 1005
>gb|AY506494.1| Triticum aestivum PXC1-like gene, complete sequence Length = 1165 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 204 tcacgagttcaccttggagc 223 |||||||||||||||||||| Sbjct: 1165 tcacgagttcaccttggagc 1146
>gb|AY506492.1| Triticum aestivum PXB4-like gene, complete sequence Length = 1196 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 204 tcacgagttcaccttggagc 223 |||||||||||||||||||| Sbjct: 1196 tcacgagttcaccttggagc 1177
>gb|AY506490.1| Triticum aestivum PXB2-like gene, partial sequence Length = 1161 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 204 tcacgagttcaccttggagc 223 |||||||||||||||||||| Sbjct: 1161 tcacgagttcaccttggagc 1142
>gb|AY506489.1| Triticum aestivum PXB1-like gene, complete sequence Length = 1076 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 204 tcacgagttcaccttggagc 223 |||||||||||||||||||| Sbjct: 1076 tcacgagttcaccttggagc 1057
>gb|AY506488.1| Triticum aestivum PXA2-like gene, complete sequence Length = 1165 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 204 tcacgagttcaccttggagc 223 |||||||||||||||||||| Sbjct: 1165 tcacgagttcaccttggagc 1146
>gb|AY506487.1| Triticum aestivum PXA1-like gene, complete sequence Length = 1165 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 204 tcacgagttcaccttggagc 223 |||||||||||||||||||| Sbjct: 1165 tcacgagttcaccttggagc 1146
>gb|AE000659.1|HUAE000659 Homo sapiens T-cell receptor alpha delta locus from bases 250472 to 501670 (section 2 of 5) of the Complete Nucleotide Sequence Length = 251199 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 gggaaattgataattcgacc 47 |||||||||||||||||||| Sbjct: 129606 gggaaattgataattcgacc 129587
>gb|AC104826.5| Homo sapiens BAC clone RP11-775M3 from 4, complete sequence Length = 138604 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 117 atactgatttgtattgacca 136 |||||||||||||||||||| Sbjct: 109299 atactgatttgtattgacca 109318
>gb|AF429387.1|AF429387 Hevea brasiliensis truncated acetyl Co-A acetyltransferase-like protein mRNA, complete cds Length = 960 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 17 tgcctttgcatgggaaattg 36 |||||||||||||||||||| Sbjct: 642 tgcctttgcatgggaaattg 661
>ref|NG_001332.1| Homo sapiens T cell receptor alpha delta locus (TCRA/TCRD) on chromosome 14 Length = 1071646 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 gggaaattgataattcgacc 47 |||||||||||||||||||| Sbjct: 380077 gggaaattgataattcgacc 380058 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,573,410 Number of Sequences: 3902068 Number of extensions: 1573410 Number of successful extensions: 104060 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 24 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 104002 Number of HSP's gapped (non-prelim): 58 length of query: 223 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 201 effective length of database: 17,147,199,772 effective search space: 3446587154172 effective search space used: 3446587154172 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)