ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet99g03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY506486.1| Triticum aestivum PXCW4-like gene, complete sequence 50 0.003
2gb|AY506485.1| Triticum aestivum PXCW3-like gene, complete sequence 50 0.003
3gb|AY506484.1| Triticum aestivum PXCW2-like gene, complete sequence 50 0.003
4gb|AY857755.1| Triticum monococcum peroxidase 1 (POX1) mRNA, com... 50 0.003
5emb|X53675.1|TAPEROXIG Wheat (T. aesitvum) mRNA for peroxidase (... 50 0.003
6gb|AF387866.1| Triticum aestivum peroxidase (pxc1A) gene, pxc1A-... 50 0.003
7emb|AJ276227.1|HVU276227 Hordeum vulgare partial mRNA for peroxi... 48 0.012
8gb|AF078872.1|AF078872 Avena sativa cultivar Ogle peroxidase PXC... 46 0.046
9gb|AF078871.1|AF078871 Avena sativa cultivar Ogle peroxidase PXC... 46 0.046
10gb|AY857757.1| Triticum monococcum peroxidase 3 (POX3) mRNA, com... 44 0.18
11emb|X85228.1|TAPOX2 T.aestivum pox2 gene 44 0.18
12emb|X58396.1|HVPEROXI Barley mRNA for peroxidase (EC=1.11.1.7) 44 0.18
13gb|L36093.1|BLYPRX Barley peroxidase mRNA, complete cds 44 0.18
14emb|X56011.1|TAPERO Wheat mRNA for peroxidase 42 0.72
15gb|AY506494.1| Triticum aestivum PXC1-like gene, complete sequence 40 2.8
16gb|AY506492.1| Triticum aestivum PXB4-like gene, complete sequence 40 2.8
17gb|AY506490.1| Triticum aestivum PXB2-like gene, partial sequence 40 2.8
18gb|AY506489.1| Triticum aestivum PXB1-like gene, complete sequence 40 2.8
19gb|AY506488.1| Triticum aestivum PXA2-like gene, complete sequence 40 2.8
20gb|AY506487.1| Triticum aestivum PXA1-like gene, complete sequence 40 2.8
21gb|AE000659.1|HUAE000659 Homo sapiens T-cell receptor alpha delt... 40 2.8
22gb|AC104826.5| Homo sapiens BAC clone RP11-775M3 from 4, complet... 40 2.8
23gb|AF429387.1|AF429387 Hevea brasiliensis truncated acetyl Co-A ... 40 2.8
24ref|NG_001332.1| Homo sapiens T cell receptor alpha delta locus ... 40 2.8

>gb|AY506486.1| Triticum aestivum PXCW4-like gene, complete sequence
          Length = 2435

 Score = 50.1 bits (25), Expect = 0.003
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                     
Query: 199  gtcaatcacgagttcaccttggagc 223
            |||||||||||||||||||||||||
Sbjct: 1831 gtcaatcacgagttcaccttggagc 1807



 Score = 40.1 bits (20), Expect = 2.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 92   aaatacacgtttcaagtgctggta 115
            ||||||| ||||||||||||||||
Sbjct: 1934 aaatacatgtttcaagtgctggta 1911



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>gb|AY506485.1| Triticum aestivum PXCW3-like gene, complete sequence
          Length = 2466

 Score = 50.1 bits (25), Expect = 0.003
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                     
Query: 199  gtcaatcacgagttcaccttggagc 223
            |||||||||||||||||||||||||
Sbjct: 1861 gtcaatcacgagttcaccttggagc 1837



 Score = 40.1 bits (20), Expect = 2.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 92   aaatacacgtttcaagtgctggta 115
            ||||||| ||||||||||||||||
Sbjct: 1965 aaatacatgtttcaagtgctggta 1942



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>gb|AY506484.1| Triticum aestivum PXCW2-like gene, complete sequence
          Length = 2456

 Score = 50.1 bits (25), Expect = 0.003
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                     
Query: 199  gtcaatcacgagttcaccttggagc 223
            |||||||||||||||||||||||||
Sbjct: 1852 gtcaatcacgagttcaccttggagc 1828



 Score = 40.1 bits (20), Expect = 2.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 92   aaatacacgtttcaagtgctggta 115
            ||||||| ||||||||||||||||
Sbjct: 1956 aaatacatgtttcaagtgctggta 1933



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>gb|AY857755.1| Triticum monococcum peroxidase 1 (POX1) mRNA, complete cds
          Length = 1259

 Score = 50.1 bits (25), Expect = 0.003
 Identities = 85/103 (82%), Gaps = 4/103 (3%)
 Strand = Plus / Minus

                                                                        
Query: 17   tgcctttgcatgggaaattgataattcgaccgttac---atgtgtagatgcacgcatgct 73
            |||||||||||| |||| ||  |||||||  |||||   || ||| |||||| ||||| |
Sbjct: 1175 tgcctttgcatgagaaagtgggaattcgattgttacataatatgtggatgcatgcatgat 1116

                                                       
Query: 74   ttgctggtgcacgtacttaaa-tacacgtttcaagtgctggta 115
            |||||| ||| ||||| |||| ||||| |||||||||||||||
Sbjct: 1115 ttgctgctgctcgtacataaactacacatttcaagtgctggta 1073



 Score = 50.1 bits (25), Expect = 0.003
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                            
Query: 191 gctcgtgcgtcaatcacgagttcaccttggagc 223
           |||||| ||||||||||||||||||| ||||||
Sbjct: 994 gctcgtccgtcaatcacgagttcaccctggagc 962



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>emb|X53675.1|TAPEROXIG Wheat (T. aesitvum) mRNA for peroxidase (EC 1.11.1.7)
          Length = 3240

 Score = 50.1 bits (25), Expect = 0.003
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                     
Query: 199  gtcaatcacgagttcaccttggagc 223
            |||||||||||||||||||||||||
Sbjct: 2543 gtcaatcacgagttcaccttggagc 2519



 Score = 40.1 bits (20), Expect = 2.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 92   aaatacacgtttcaagtgctggta 115
            ||||||| ||||||||||||||||
Sbjct: 2647 aaatacatgtttcaagtgctggta 2624



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>gb|AF387866.1| Triticum aestivum peroxidase (pxc1A) gene, pxc1A-2A allele, complete
            cds
          Length = 2458

 Score = 50.1 bits (25), Expect = 0.003
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                     
Query: 199  gtcaatcacgagttcaccttggagc 223
            |||||||||||||||||||||||||
Sbjct: 1855 gtcaatcacgagttcaccttggagc 1831



 Score = 40.1 bits (20), Expect = 2.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 92   aaatacacgtttcaagtgctggta 115
            ||||||| ||||||||||||||||
Sbjct: 1959 aaatacatgtttcaagtgctggta 1936



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>emb|AJ276227.1|HVU276227 Hordeum vulgare partial mRNA for peroxidase (prx8 gene)
          Length = 930

 Score = 48.1 bits (24), Expect = 0.012
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                               
Query: 188 gtagctcgtgcgtcaatcacgagttcaccttggagc 223
           ||||||||| |||| |||||||||||||| ||||||
Sbjct: 930 gtagctcgtccgtcgatcacgagttcaccctggagc 895



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>gb|AF078872.1|AF078872 Avena sativa cultivar Ogle peroxidase PXC6 precursor (pxc6) gene,
            complete cds
          Length = 1197

 Score = 46.1 bits (23), Expect = 0.046
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 201  caatcacgagttcaccttggagc 223
            |||||||||||||||||||||||
Sbjct: 1197 caatcacgagttcaccttggagc 1175



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>gb|AF078871.1|AF078871 Avena sativa cultivar Ogle peroxidase PXC2 precursor (pxc2) gene,
            complete cds
          Length = 1191

 Score = 46.1 bits (23), Expect = 0.046
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 201  caatcacgagttcaccttggagc 223
            |||||||||||||||||||||||
Sbjct: 1191 caatcacgagttcaccttggagc 1169



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>gb|AY857757.1| Triticum monococcum peroxidase 3 (POX3) mRNA, complete cds
          Length = 1295

 Score = 44.1 bits (22), Expect = 0.18
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 198  cgtcaatcacgagttcaccttggagc 223
            |||| |||||||||||||||||||||
Sbjct: 1012 cgtccatcacgagttcaccttggagc 987



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>emb|X85228.1|TAPOX2 T.aestivum pox2 gene
          Length = 1658

 Score = 44.1 bits (22), Expect = 0.18
 Identities = 60/72 (83%), Gaps = 3/72 (4%)
 Strand = Plus / Minus

                                                                        
Query: 47   cgttacatgtgtagatgcacgcatgctttgctggtgcacgtactt---aaatacacgttt 103
            ||||||||  || |||||| ||||| ||||||| ||||| | |||   ||||||||| ||
Sbjct: 1550 cgttacatacgttgatgcatgcatgatttgctgctgcacatgctttgaaaatacacgatt 1491

                        
Query: 104  caagtgctggta 115
            ||||||||||||
Sbjct: 1490 caagtgctggta 1479



 Score = 44.1 bits (22), Expect = 0.18
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 198  cgtcaatcacgagttcaccttggagc 223
            |||| |||||||||||||||||||||
Sbjct: 1412 cgtccatcacgagttcaccttggagc 1387



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>emb|X58396.1|HVPEROXI Barley mRNA for peroxidase (EC=1.11.1.7)
          Length = 1285

 Score = 44.1 bits (22), Expect = 0.18
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                              
Query: 190  agctcgtgcgtcaatcacgagttcaccttggagc 223
            ||||||| |||| |||||||||||||| ||||||
Sbjct: 1029 agctcgtccgtcgatcacgagttcaccctggagc 996



 Score = 42.1 bits (21), Expect = 0.72
 Identities = 53/61 (86%), Gaps = 2/61 (3%)
 Strand = Plus / Minus

                                                                        
Query: 56   tgtagatgcacgcatgctttgctggtgcacgtacttaaa-tacacgttt-caagtgctgg 113
            |||||||||| ||||| |||||||  || |||||||||| || |||||| ||||||||||
Sbjct: 1163 tgtagatgcatgcatgatttgctgccgctcgtacttaaaatagacgttttcaagtgctgg 1104

             
Query: 114  t 114
            |
Sbjct: 1103 t 1103



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>gb|L36093.1|BLYPRX Barley peroxidase mRNA, complete cds
          Length = 1262

 Score = 44.1 bits (22), Expect = 0.18
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                              
Query: 190  agctcgtgcgtcaatcacgagttcaccttggagc 223
            ||||||| |||| |||||||||||||| ||||||
Sbjct: 1029 agctcgtccgtcgatcacgagttcaccctggagc 996



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>emb|X56011.1|TAPERO Wheat mRNA for peroxidase
          Length = 1247

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 56/65 (86%), Gaps = 2/65 (3%)
 Strand = Plus / Minus

                                                                        
Query: 53   atgtgtagatgcacgcatgctttgctggtgcacgtac-ttaaatacac-gtttcaagtgc 110
            ||||||||||||| ||||| ||||||| | | ||||| | |||||||| |||||||| ||
Sbjct: 1170 atgtgtagatgcatgcatgatttgctgctactcgtacataaaatacacggtttcaagagc 1111

                 
Query: 111  tggta 115
            |||||
Sbjct: 1110 tggta 1106



 Score = 40.1 bits (20), Expect = 2.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 200  tcaatcacgagttcaccttggagc 223
            ||||||||||||||||| ||||||
Sbjct: 1028 tcaatcacgagttcaccctggagc 1005



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>gb|AY506494.1| Triticum aestivum PXC1-like gene, complete sequence
          Length = 1165

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 204  tcacgagttcaccttggagc 223
            ||||||||||||||||||||
Sbjct: 1165 tcacgagttcaccttggagc 1146



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>gb|AY506492.1| Triticum aestivum PXB4-like gene, complete sequence
          Length = 1196

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 204  tcacgagttcaccttggagc 223
            ||||||||||||||||||||
Sbjct: 1196 tcacgagttcaccttggagc 1177



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>gb|AY506490.1| Triticum aestivum PXB2-like gene, partial sequence
          Length = 1161

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 204  tcacgagttcaccttggagc 223
            ||||||||||||||||||||
Sbjct: 1161 tcacgagttcaccttggagc 1142



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>gb|AY506489.1| Triticum aestivum PXB1-like gene, complete sequence
          Length = 1076

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 204  tcacgagttcaccttggagc 223
            ||||||||||||||||||||
Sbjct: 1076 tcacgagttcaccttggagc 1057



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>gb|AY506488.1| Triticum aestivum PXA2-like gene, complete sequence
          Length = 1165

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 204  tcacgagttcaccttggagc 223
            ||||||||||||||||||||
Sbjct: 1165 tcacgagttcaccttggagc 1146



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>gb|AY506487.1| Triticum aestivum PXA1-like gene, complete sequence
          Length = 1165

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 204  tcacgagttcaccttggagc 223
            ||||||||||||||||||||
Sbjct: 1165 tcacgagttcaccttggagc 1146



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>gb|AE000659.1|HUAE000659 Homo sapiens T-cell receptor alpha delta locus from bases 250472 to
              501670 (section 2 of 5) of the Complete Nucleotide Sequence
          Length = 251199

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 28     gggaaattgataattcgacc 47
              ||||||||||||||||||||
Sbjct: 129606 gggaaattgataattcgacc 129587



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>gb|AC104826.5| Homo sapiens BAC clone RP11-775M3 from 4, complete sequence
          Length = 138604

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 117    atactgatttgtattgacca 136
              ||||||||||||||||||||
Sbjct: 109299 atactgatttgtattgacca 109318



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>gb|AF429387.1|AF429387 Hevea brasiliensis truncated acetyl Co-A acetyltransferase-like
           protein mRNA, complete cds
          Length = 960

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 17  tgcctttgcatgggaaattg 36
           ||||||||||||||||||||
Sbjct: 642 tgcctttgcatgggaaattg 661



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>ref|NG_001332.1| Homo sapiens T cell receptor alpha delta locus (TCRA/TCRD) on chromosome
              14
          Length = 1071646

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 28     gggaaattgataattcgacc 47
              ||||||||||||||||||||
Sbjct: 380077 gggaaattgataattcgacc 380058


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,573,410
Number of Sequences: 3902068
Number of extensions: 1573410
Number of successful extensions: 104060
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 104002
Number of HSP's gapped (non-prelim): 58
length of query: 223
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 201
effective length of database: 17,147,199,772
effective search space: 3446587154172
effective search space used: 3446587154172
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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