ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet99g02 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AJ243524.1|PPR243524 Phleum pratense mRNA for putative fructose-bisphosphate aldolase, partial Length = 963 Score = 135 bits (68), Expect = 6e-29 Identities = 83/88 (94%) Strand = Plus / Minus Query: 112 atcagtacttgtagtccttgacgtgaaggctctcggaggcgccctcgccaagggtggcgt 171 ||||||||||||||||||||||||| |||||||| || ||||||||||| |||||||||| Sbjct: 685 atcagtacttgtagtccttgacgtggaggctctcagaagcgccctcgcccagggtggcgt 626 Query: 172 cgcccttgtaagtgccgagggtggcctc 199 |||||||||| ||||||||||||||||| Sbjct: 625 cgcccttgtaggtgccgagggtggcctc 598 Score = 58.0 bits (29), Expect = 1e-05 Identities = 59/67 (88%), Gaps = 4/67 (5%) Strand = Plus / Minus Query: 1 attaaaaacgaggttcgatatccgaaggatatatctcaggactctgaaaaccaaacaatg 60 ||||||||||| |||||||||||||| ||||||| ||||||| |||||| ||||||| Sbjct: 805 attaaaaacgatgttcgatatccgaa-gatatat---aggactcagaaaacgaaacaata 750 Query: 61 atactgg 67 ||||||| Sbjct: 749 atactgg 743
>emb|AJ420778.1|TAE420778 Triticum aestivum partial mRNA for putative fructose 1-,6- biphosphate aldolase (ald gene) Length = 1093 Score = 127 bits (64), Expect = 1e-26 Identities = 82/88 (93%) Strand = Plus / Minus Query: 112 atcagtacttgtagtccttgacgtgaaggctctcggaggcgccctcgccaagggtggcgt 171 |||||||||||||||||||||| || |||||||| |||||||||||| |||||||||||| Sbjct: 806 atcagtacttgtagtccttgacatggaggctctccgaggcgccctcggcaagggtggcgt 747 Query: 172 cgcccttgtaagtgccgagggtggcctc 199 |||||||||| || |||||||||||||| Sbjct: 746 cgcccttgtaggtcccgagggtggcctc 719
>gb|AC135418.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0035J16, complete sequence Length = 170233 Score = 113 bits (57), Expect = 2e-22 Identities = 81/89 (91%) Strand = Plus / Minus Query: 111 aatcagtacttgtagtccttgacgtgaaggctctcggaggcgccctcgccaagggtggcg 170 |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| Sbjct: 167842 aatcagtacttgtagtccttgacgtgaaggctctcggaggcgccctcgccgaggacagcg 167783 Query: 171 tcgcccttgtaagtgccgagggtggcctc 199 || |||||||| || |||||||| ||||| Sbjct: 167782 tcacccttgtatgtaccgagggtagcctc 167754
>gb|AC120991.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0006J12, complete sequence Length = 157069 Score = 113 bits (57), Expect = 2e-22 Identities = 81/89 (91%) Strand = Plus / Minus Query: 111 aatcagtacttgtagtccttgacgtgaaggctctcggaggcgccctcgccaagggtggcg 170 |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| Sbjct: 65205 aatcagtacttgtagtccttgacgtgaaggctctcggaggcgccctcgccgaggacagcg 65146 Query: 171 tcgcccttgtaagtgccgagggtggcctc 199 || |||||||| || |||||||| ||||| Sbjct: 65145 tcacccttgtatgtaccgagggtagcctc 65117
>emb|X53130.1|OSFBPA Rice mRNA for fructose-diphosphate aldolase (EC 4.1.2.13) Length = 1305 Score = 113 bits (57), Expect = 2e-22 Identities = 81/89 (91%) Strand = Plus / Minus Query: 111 aatcagtacttgtagtccttgacgtgaaggctctcggaggcgccctcgccaagggtggcg 170 |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| Sbjct: 1129 aatcagtacttgtagtccttgacgtgaaggctctcggaggcgccctcgccgaggacagcg 1070 Query: 171 tcgcccttgtaagtgccgagggtggcctc 199 || |||||||| || |||||||| ||||| Sbjct: 1069 tcacccttgtatgtaccgagggtagcctc 1041
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 113 bits (57), Expect = 2e-22 Identities = 81/89 (91%) Strand = Plus / Minus Query: 111 aatcagtacttgtagtccttgacgtgaaggctctcggaggcgccctcgccaagggtggcg 170 |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| Sbjct: 19464493 aatcagtacttgtagtccttgacgtgaaggctctcggaggcgccctcgccgaggacagcg 19464434 Query: 171 tcgcccttgtaagtgccgagggtggcctc 199 || |||||||| || |||||||| ||||| Sbjct: 19464433 tcacccttgtatgtaccgagggtagcctc 19464405
>gb|AY522925.1| Oryza sativa (japonica cultivar-group) fructose 1,6-bisphosphate aldolase (FBA) mRNA, complete cds Length = 1077 Score = 109 bits (55), Expect = 3e-21 Identities = 79/87 (90%) Strand = Plus / Minus Query: 113 tcagtacttgtagtccttgacgtgaaggctctcggaggcgccctcgccaagggtggcgtc 172 |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| Sbjct: 1077 tcagtacttgtagtccttgacgtgaaggctctcggaggcgccctcgccgaggacagcgtc 1018 Query: 173 gcccttgtaagtgccgagggtggcctc 199 |||||||| || |||||||| ||||| Sbjct: 1017 acccttgtatgtaccgagggtagcctc 991
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 81.8 bits (41), Expect = 7e-13 Identities = 47/49 (95%) Strand = Plus / Plus Query: 112 atcagtacttgtagtccttgacgtgaaggctctcggaggcgccctcgcc 160 |||||||||||||||||||||||||||||||||| ||||| |||||||| Sbjct: 39426956 atcagtacttgtagtccttgacgtgaaggctctcagaggcaccctcgcc 39427004
>dbj|AP006531.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1417F08 Length = 155536 Score = 81.8 bits (41), Expect = 7e-13 Identities = 47/49 (95%) Strand = Plus / Plus Query: 112 atcagtacttgtagtccttgacgtgaaggctctcggaggcgccctcgcc 160 |||||||||||||||||||||||||||||||||| ||||| |||||||| Sbjct: 1970 atcagtacttgtagtccttgacgtgaaggctctcagaggcaccctcgcc 2018
>dbj|AP006839.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, fosmid clone:OSJNOa108M02 Length = 38208 Score = 81.8 bits (41), Expect = 7e-13 Identities = 47/49 (95%) Strand = Plus / Plus Query: 112 atcagtacttgtagtccttgacgtgaaggctctcggaggcgccctcgcc 160 |||||||||||||||||||||||||||||||||| ||||| |||||||| Sbjct: 37480 atcagtacttgtagtccttgacgtgaaggctctcagaggcaccctcgcc 37528
>dbj|AK104719.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-A10, full insert sequence Length = 1399 Score = 81.8 bits (41), Expect = 7e-13 Identities = 47/49 (95%) Strand = Plus / Minus Query: 112 atcagtacttgtagtccttgacgtgaaggctctcggaggcgccctcgcc 160 |||||||||||||||||||||||||||||||||| ||||| |||||||| Sbjct: 1150 atcagtacttgtagtccttgacgtgaaggctctcagaggcaccctcgcc 1102
>dbj|AK073770.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033068A16, full insert sequence Length = 1486 Score = 81.8 bits (41), Expect = 7e-13 Identities = 47/49 (95%) Strand = Plus / Minus Query: 112 atcagtacttgtagtccttgacgtgaaggctctcggaggcgccctcgcc 160 |||||||||||||||||||||||||||||||||| ||||| |||||||| Sbjct: 1197 atcagtacttgtagtccttgacgtgaaggctctcagaggcaccctcgcc 1149
>dbj|D50307.1|RICALDC1 Rice DNA for aldolase C-1, complete cds Length = 2191 Score = 79.8 bits (40), Expect = 3e-12 Identities = 46/48 (95%) Strand = Plus / Minus Query: 113 tcagtacttgtagtccttgacgtgaaggctctcggaggcgccctcgcc 160 ||||||||||||||||||||||||||||||||| ||||| |||||||| Sbjct: 2020 tcagtacttgtagtccttgacgtgaaggctctcagaggcaccctcgcc 1973
>dbj|D50301.1|RICAC1 Rice mRNA for aldolase C-1, complete cds Length = 1299 Score = 79.8 bits (40), Expect = 3e-12 Identities = 46/48 (95%) Strand = Plus / Minus Query: 113 tcagtacttgtagtccttgacgtgaaggctctcggaggcgccctcgcc 160 ||||||||||||||||||||||||||||||||| ||||| |||||||| Sbjct: 1128 tcagtacttgtagtccttgacgtgaaggctctcagaggcaccctcgcc 1081
>dbj|AK061050.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-205-G03, full insert sequence Length = 1269 Score = 77.8 bits (39), Expect = 1e-11 Identities = 39/39 (100%) Strand = Plus / Minus Query: 111 aatcagtacttgtagtccttgacgtgaaggctctcggag 149 ||||||||||||||||||||||||||||||||||||||| Sbjct: 1093 aatcagtacttgtagtccttgacgtgaaggctctcggag 1055
>ref|XM_479829.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1370 Score = 71.9 bits (36), Expect = 7e-10 Identities = 45/48 (93%) Strand = Plus / Minus Query: 113 tcagtacttgtagtccttgacgtgaaggctctcggaggcgccctcgcc 160 |||||||||||||||||||||||| ||| |||||||| |||||||||| Sbjct: 1184 tcagtacttgtagtccttgacgtggaggttctcggagacgccctcgcc 1137
>ref|XM_507104.1| PREDICTED Oryza sativa (japonica cultivar-group), B1203H11.11 mRNA Length = 1406 Score = 71.9 bits (36), Expect = 7e-10 Identities = 45/48 (93%) Strand = Plus / Minus Query: 113 tcagtacttgtagtccttgacgtgaaggctctcggaggcgccctcgcc 160 |||||||||||||||||||||||| ||| |||||||| |||||||||| Sbjct: 1183 tcagtacttgtagtccttgacgtggaggttctcggagacgccctcgcc 1136
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 71.9 bits (36), Expect = 7e-10 Identities = 45/48 (93%) Strand = Plus / Plus Query: 113 tcagtacttgtagtccttgacgtgaaggctctcggaggcgccctcgcc 160 |||||||||||||||||||||||| ||| |||||||| |||||||||| Sbjct: 1121762 tcagtacttgtagtccttgacgtggaggttctcggagacgccctcgcc 1121809
>dbj|AP006723.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:B1203H11 Length = 156561 Score = 71.9 bits (36), Expect = 7e-10 Identities = 45/48 (93%) Strand = Plus / Plus Query: 113 tcagtacttgtagtccttgacgtgaaggctctcggaggcgccctcgcc 160 |||||||||||||||||||||||| ||| |||||||| |||||||||| Sbjct: 34999 tcagtacttgtagtccttgacgtggaggttctcggagacgccctcgcc 35046
>dbj|AK104952.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-110-D12, full insert sequence Length = 1405 Score = 71.9 bits (36), Expect = 7e-10 Identities = 45/48 (93%) Strand = Plus / Minus Query: 113 tcagtacttgtagtccttgacgtgaaggctctcggaggcgccctcgcc 160 |||||||||||||||||||||||| ||| |||||||| |||||||||| Sbjct: 1182 tcagtacttgtagtccttgacgtggaggttctcggagacgccctcgcc 1135
>dbj|AK069887.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023038B06, full insert sequence Length = 1370 Score = 71.9 bits (36), Expect = 7e-10 Identities = 45/48 (93%) Strand = Plus / Minus Query: 113 tcagtacttgtagtccttgacgtgaaggctctcggaggcgccctcgcc 160 |||||||||||||||||||||||| ||| |||||||| |||||||||| Sbjct: 1184 tcagtacttgtagtccttgacgtggaggttctcggagacgccctcgcc 1137
>gb|BT016260.1| Zea mays clone Contig93 mRNA sequence Length = 1417 Score = 69.9 bits (35), Expect = 3e-09 Identities = 35/35 (100%) Strand = Plus / Minus Query: 113 tcagtacttgtagtccttgacgtgaaggctctcgg 147 ||||||||||||||||||||||||||||||||||| Sbjct: 1144 tcagtacttgtagtccttgacgtgaaggctctcgg 1110
>gb|DQ222486.1| Solanum tuberosum clone 097F12 unknown mRNA Length = 1282 Score = 65.9 bits (33), Expect = 4e-08 Identities = 42/45 (93%) Strand = Plus / Minus Query: 115 agtacttgtagtccttgacgtgaaggctctcggaggcgccctcgc 159 ||||||||||||||||||| || ||||||||||| |||||||||| Sbjct: 1112 agtacttgtagtccttgacatggaggctctcggaagcgccctcgc 1068
>gb|AF332957.1|AF332957 Lycopersicon esculentum fructose-1,6-bisphosphate aldolase mRNA, partial cds Length = 862 Score = 65.9 bits (33), Expect = 4e-08 Identities = 42/45 (93%) Strand = Plus / Minus Query: 115 agtacttgtagtccttgacgtgaaggctctcggaggcgccctcgc 159 |||||||||||||||| || |||||||||||||| |||||||||| Sbjct: 625 agtacttgtagtccttaacatgaaggctctcggacgcgccctcgc 581
>dbj|AK059257.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-024-H11, full insert sequence Length = 1374 Score = 65.9 bits (33), Expect = 4e-08 Identities = 39/41 (95%) Strand = Plus / Minus Query: 120 ttgtagtccttgacgtgaaggctctcggaggcgccctcgcc 160 |||||||||||||||||||||||||| ||||| |||||||| Sbjct: 832 ttgtagtccttgacgtgaaggctctcagaggcaccctcgcc 792
>gb|DQ294273.1| Solanum tuberosum clone 156H06 fructose-bisphosphate aldolase-like protein mRNA, complete cds Length = 1210 Score = 65.9 bits (33), Expect = 4e-08 Identities = 42/45 (93%) Strand = Plus / Minus Query: 115 agtacttgtagtccttgacgtgaaggctctcggaggcgccctcgc 159 ||||||||||||||||||| || ||||||||||| |||||||||| Sbjct: 1095 agtacttgtagtccttgacatggaggctctcggaagcgccctcgc 1051
>gb|DQ235169.1| Solanum tuberosum clone 154D06 fructose-bisphosphate aldolase-like mRNA, complete cds Length = 1298 Score = 63.9 bits (32), Expect = 2e-07 Identities = 32/32 (100%) Strand = Plus / Minus Query: 117 tacttgtagtccttgacgtgaaggctctcgga 148 |||||||||||||||||||||||||||||||| Sbjct: 1142 tacttgtagtccttgacgtgaaggctctcgga 1111
>gb|DQ228325.1| Solanum tuberosum clone 135C01 unknown mRNA Length = 1388 Score = 63.9 bits (32), Expect = 2e-07 Identities = 32/32 (100%) Strand = Plus / Minus Query: 117 tacttgtagtccttgacgtgaaggctctcgga 148 |||||||||||||||||||||||||||||||| Sbjct: 1175 tacttgtagtccttgacgtgaaggctctcgga 1144
>gb|BT014227.1| Lycopersicon esculentum clone 133422F, mRNA sequence Length = 1439 Score = 63.9 bits (32), Expect = 2e-07 Identities = 32/32 (100%) Strand = Plus / Minus Query: 117 tacttgtagtccttgacgtgaaggctctcgga 148 |||||||||||||||||||||||||||||||| Sbjct: 1255 tacttgtagtccttgacgtgaaggctctcgga 1224
>gb|AC158405.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone B1366F05, complete sequence Length = 171022 Score = 63.9 bits (32), Expect = 2e-07 Identities = 74/88 (84%) Strand = Plus / Minus Query: 112 atcagtacttgtagtccttgacgtgaaggctctcggaggcgccctcgccaagggtggcgt 171 ||||||||||||||||||||||||| ||||| || | ||||||||||| ||| || | Sbjct: 70225 atcagtacttgtagtccttgacgtgcaggctttcagcagcgccctcgccgaggacagcat 70166 Query: 172 cgcccttgtaagtgccgagggtggcctc 199 | ||||||||||| || ||||| ||||| Sbjct: 70165 cacccttgtaagtacccagggtagcctc 70138
>dbj|AK099184.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023106E24, full insert sequence Length = 1470 Score = 63.9 bits (32), Expect = 2e-07 Identities = 74/88 (84%) Strand = Plus / Minus Query: 112 atcagtacttgtagtccttgacgtgaaggctctcggaggcgccctcgccaagggtggcgt 171 ||||||||||||||||||||||||| ||||| || | ||||||||||| ||| || | Sbjct: 1139 atcagtacttgtagtccttgacgtgcaggctttcagcagcgccctcgccgaggacagcat 1080 Query: 172 cgcccttgtaagtgccgagggtggcctc 199 | ||||||||||| || ||||| ||||| Sbjct: 1079 cacccttgtaagtacccagggtagcctc 1052
>dbj|AK071547.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023099B20, full insert sequence Length = 1478 Score = 63.9 bits (32), Expect = 2e-07 Identities = 74/88 (84%) Strand = Plus / Minus Query: 112 atcagtacttgtagtccttgacgtgaaggctctcggaggcgccctcgccaagggtggcgt 171 ||||||||||||||||||||||||| ||||| || | ||||||||||| ||| || | Sbjct: 1127 atcagtacttgtagtccttgacgtgcaggctttcagcagcgccctcgccgaggacagcat 1068 Query: 172 cgcccttgtaagtgccgagggtggcctc 199 | ||||||||||| || ||||| ||||| Sbjct: 1067 cacccttgtaagtacccagggtagcctc 1040
>dbj|D13512.1|RICCYTALD Oryza sativa gene for cytoplasmic aldolase, complete cds, clone:AldC-a Length = 1801 Score = 63.9 bits (32), Expect = 2e-07 Identities = 74/88 (84%) Strand = Plus / Minus Query: 112 atcagtacttgtagtccttgacgtgaaggctctcggaggcgccctcgccaagggtggcgt 171 ||||||||||||||||||||||||| ||||| || | ||||||||||| ||| || | Sbjct: 1664 atcagtacttgtagtccttgacgtgcaggctttcagcagcgccctcgccgaggacagcat 1605 Query: 172 cgcccttgtaagtgccgagggtggcctc 199 | ||||||||||| || ||||| ||||| Sbjct: 1604 cacccttgtaagtacccagggtagcctc 1577
>gb|BT016836.1| Zea mays clone Contig669 mRNA sequence Length = 1458 Score = 61.9 bits (31), Expect = 7e-07 Identities = 34/35 (97%) Strand = Plus / Minus Query: 113 tcagtacttgtagtccttgacgtgaaggctctcgg 147 |||||||||||||||||||||||| |||||||||| Sbjct: 1164 tcagtacttgtagtccttgacgtggaggctctcgg 1130
>emb|X12872.1|ZMALDOAR Maize anaerobically regulated gene for fructose bisphosphate aldolase (EC 4.1.2.13) Length = 3324 Score = 61.9 bits (31), Expect = 7e-07 Identities = 34/35 (97%) Strand = Plus / Minus Query: 113 tcagtacttgtagtccttgacgtgaaggctctcgg 147 |||||||||||||||||||||||| |||||||||| Sbjct: 2819 tcagtacttgtagtccttgacgtggaggctctcgg 2785
>gb|AF003124.1|AF003124 Mesembryanthemum crystallinum fructose-biphosphate aldolase mRNA, complete cds Length = 1437 Score = 61.9 bits (31), Expect = 7e-07 Identities = 31/31 (100%) Strand = Plus / Minus Query: 115 agtacttgtagtccttgacgtgaaggctctc 145 ||||||||||||||||||||||||||||||| Sbjct: 1153 agtacttgtagtccttgacgtgaaggctctc 1123
>gb|M16220.1|MZEALD Maize (Z.mays) aldolase mRNA, complete cds Length = 1388 Score = 61.9 bits (31), Expect = 7e-07 Identities = 34/35 (97%) Strand = Plus / Minus Query: 113 tcagtacttgtagtccttgacgtgaaggctctcgg 147 |||||||||||||||||||||||| |||||||||| Sbjct: 1089 tcagtacttgtagtccttgacgtggaggctctcgg 1055
>emb|X65742.1|SOALDCYT S.oleracae ALDCyt mRNA for fructose-1,6-biphosphate aldolase Length = 1390 Score = 58.0 bits (29), Expect = 1e-05 Identities = 35/37 (94%) Strand = Plus / Minus Query: 115 agtacttgtagtccttgacgtgaaggctctcggaggc 151 |||||||||||||||| |||||||||||||| ||||| Sbjct: 1093 agtacttgtagtccttaacgtgaaggctctcagaggc 1057
>gb|AF308587.1|AF308587 Fragaria x ananassa cytosolic aldolase (SCA1) mRNA, complete cds Length = 1409 Score = 58.0 bits (29), Expect = 1e-05 Identities = 59/69 (85%) Strand = Plus / Minus Query: 113 tcagtacttgtagtccttgacgtgaaggctctcggaggcgccctcgccaagggtggcgtc 172 ||||||||||||||||||||| ||||| ||||| | || ||||| ||||| |||| || Sbjct: 1116 tcagtacttgtagtccttgacatgaagactctctgcagcaccctcaccaagcttggcatc 1057 Query: 173 gcccttgta 181 ||||||||| Sbjct: 1056 gcccttgta 1048
>gb|AF521254.1| Metasequoia glyptostroboides fructose-1,6-diphosphate aldolase mRNA, complete cds Length = 1504 Score = 56.0 bits (28), Expect = 4e-05 Identities = 28/28 (100%) Strand = Plus / Minus Query: 120 ttgtagtccttgacgtgaaggctctcgg 147 |||||||||||||||||||||||||||| Sbjct: 1228 ttgtagtccttgacgtgaaggctctcgg 1201
>gb|AF173646.1|AF173646 Beta vulgaris clone ALD109UNI cytosolic fructose 1,6-bisphosphate aldolase (Aldcyt) gene, partial sequence Length = 455 Score = 52.0 bits (26), Expect = 7e-04 Identities = 29/30 (96%) Strand = Plus / Minus Query: 122 gtagtccttgacgtgaaggctctcggaggc 151 |||||||||||||||||||||||| ||||| Sbjct: 455 gtagtccttgacgtgaaggctctcagaggc 426
>ref|NM_115153.2| Arabidopsis thaliana fructose-bisphosphate aldolase AT3G52930 mRNA, complete cds Length = 1780 Score = 50.1 bits (25), Expect = 0.003 Identities = 31/33 (93%) Strand = Plus / Minus Query: 113 tcagtacttgtagtccttgacgtgaaggctctc 145 |||||||||||| ||||| |||||||||||||| Sbjct: 1145 tcagtacttgtaatccttcacgtgaaggctctc 1113
>ref|NM_180428.1| Arabidopsis thaliana fructose-bisphosphate aldolase AT5G03690 transcript variant AT5G03690.2 mRNA, complete cds Length = 1328 Score = 50.1 bits (25), Expect = 0.003 Identities = 28/29 (96%) Strand = Plus / Minus Query: 120 ttgtagtccttgacgtgaaggctctcgga 148 |||||||| |||||||||||||||||||| Sbjct: 1080 ttgtagtctttgacgtgaaggctctcgga 1052
>ref|NM_120450.2| Arabidopsis thaliana fructose-bisphosphate aldolase AT5G03690 transcript variant AT5G03690.1 mRNA, complete cds Length = 1491 Score = 50.1 bits (25), Expect = 0.003 Identities = 28/29 (96%) Strand = Plus / Minus Query: 120 ttgtagtccttgacgtgaaggctctcgga 148 |||||||| |||||||||||||||||||| Sbjct: 1243 ttgtagtctttgacgtgaaggctctcgga 1215
>ref|NM_129203.2| Arabidopsis thaliana fructose-bisphosphate aldolase AT2G36460 mRNA, complete cds Length = 1432 Score = 50.1 bits (25), Expect = 0.003 Identities = 31/33 (93%) Strand = Plus / Minus Query: 113 tcagtacttgtagtccttgacgtgaaggctctc 145 |||||||||||| ||||| |||||||||||||| Sbjct: 1204 tcagtacttgtaatccttaacgtgaaggctctc 1172
>gb|AY063044.1| Arabidopsis thaliana putative fructose bisphosphate aldolase (At2g36460) mRNA, complete cds Length = 1108 Score = 50.1 bits (25), Expect = 0.003 Identities = 31/33 (93%) Strand = Plus / Minus Query: 113 tcagtacttgtagtccttgacgtgaaggctctc 145 |||||||||||| ||||| |||||||||||||| Sbjct: 1077 tcagtacttgtaatccttaacgtgaaggctctc 1045
>gb|AY034897.1| Arabidopsis thaliana putative fructose bisphosphate aldolase (At2g36460) mRNA, complete cds Length = 1342 Score = 50.1 bits (25), Expect = 0.003 Identities = 31/33 (93%) Strand = Plus / Minus Query: 113 tcagtacttgtagtccttgacgtgaaggctctc 145 |||||||||||| ||||| |||||||||||||| Sbjct: 1143 tcagtacttgtaatccttaacgtgaaggctctc 1111
>emb|AL162506.1|ATF17C15 Arabidopsis thaliana DNA chromosome 5, BAC clone F17C15 (ESSA project) Length = 102897 Score = 50.1 bits (25), Expect = 0.003 Identities = 28/29 (96%) Strand = Plus / Plus Query: 120 ttgtagtccttgacgtgaaggctctcgga 148 |||||||| |||||||||||||||||||| Sbjct: 58655 ttgtagtctttgacgtgaaggctctcgga 58683
>emb|AL132969.2|ATF8J2 Arabidopsis thaliana DNA chromosome 3, BAC clone F8J2 Length = 99814 Score = 50.1 bits (25), Expect = 0.003 Identities = 31/33 (93%) Strand = Plus / Plus Query: 113 tcagtacttgtagtccttgacgtgaaggctctc 145 |||||||||||| ||||| |||||||||||||| Sbjct: 50763 tcagtacttgtaatccttcacgtgaaggctctc 50795
>gb|AY093359.1| Arabidopsis thaliana fructose-bisphosphate aldolase-like protein (F17C15.11) mRNA, complete cds Length = 1263 Score = 50.1 bits (25), Expect = 0.003 Identities = 28/29 (96%) Strand = Plus / Minus Query: 120 ttgtagtccttgacgtgaaggctctcgga 148 |||||||| |||||||||||||||||||| Sbjct: 1073 ttgtagtctttgacgtgaaggctctcgga 1045
>gb|AC006919.6| Arabidopsis thaliana chromosome 2 clone F1O11 map g6825, complete sequence Length = 104364 Score = 50.1 bits (25), Expect = 0.003 Identities = 31/33 (93%) Strand = Plus / Plus Query: 113 tcagtacttgtagtccttgacgtgaaggctctc 145 |||||||||||| ||||| |||||||||||||| Sbjct: 45977 tcagtacttgtaatccttaacgtgaaggctctc 46009
>gb|AY063718.1| Arabidopsis thaliana AT3g52930/F8J2_100 mRNA, complete cds Length = 1077 Score = 50.1 bits (25), Expect = 0.003 Identities = 31/33 (93%) Strand = Plus / Minus Query: 113 tcagtacttgtagtccttgacgtgaaggctctc 145 |||||||||||| ||||| |||||||||||||| Sbjct: 1077 tcagtacttgtaatccttcacgtgaaggctctc 1045
>gb|AY062566.1| Arabidopsis thaliana fructose-bisphosphate aldolase-like protein (F17C15.11) mRNA, complete cds Length = 1328 Score = 50.1 bits (25), Expect = 0.003 Identities = 28/29 (96%) Strand = Plus / Minus Query: 120 ttgtagtccttgacgtgaaggctctcgga 148 |||||||| |||||||||||||||||||| Sbjct: 1080 ttgtagtctttgacgtgaaggctctcgga 1052
>gb|AY057656.1| Arabidopsis thaliana AT3g52930/F8J2_100 mRNA, complete cds Length = 1391 Score = 50.1 bits (25), Expect = 0.003 Identities = 31/33 (93%) Strand = Plus / Minus Query: 113 tcagtacttgtagtccttgacgtgaaggctctc 145 |||||||||||| ||||| |||||||||||||| Sbjct: 1142 tcagtacttgtaatccttcacgtgaaggctctc 1110
>dbj|AK221150.1| Arabidopsis thaliana mRNA for fructose bisphosphate aldolase -like protein, partial cds, clone: RAFL22-94-A08 Length = 424 Score = 50.1 bits (25), Expect = 0.003 Identities = 31/33 (93%) Strand = Plus / Minus Query: 113 tcagtacttgtagtccttgacgtgaaggctctc 145 |||||||||||| ||||| |||||||||||||| Sbjct: 209 tcagtacttgtaatccttcacgtgaaggctctc 177
>gb|AY052709.1| Arabidopsis thaliana AT3g52930/F8J2_100 mRNA, complete cds Length = 1369 Score = 50.1 bits (25), Expect = 0.003 Identities = 31/33 (93%) Strand = Plus / Minus Query: 113 tcagtacttgtagtccttgacgtgaaggctctc 145 |||||||||||| ||||| |||||||||||||| Sbjct: 1145 tcagtacttgtaatccttcacgtgaaggctctc 1113
>emb|BX819927.1|CNS0A9DC Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS4ZE10 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1215 Score = 50.1 bits (25), Expect = 0.003 Identities = 31/33 (93%) Strand = Plus / Minus Query: 113 tcagtacttgtagtccttgacgtgaaggctctc 145 |||||||||||| ||||| |||||||||||||| Sbjct: 1050 tcagtacttgtaatccttaacgtgaaggctctc 1018
>emb|BX819845.1|CNS0A9DK Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS37ZE03 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1241 Score = 50.1 bits (25), Expect = 0.003 Identities = 31/33 (93%) Strand = Plus / Minus Query: 113 tcagtacttgtagtccttgacgtgaaggctctc 145 |||||||||||| ||||| |||||||||||||| Sbjct: 1121 tcagtacttgtaatccttaacgtgaaggctctc 1089
>emb|BX819692.1|CNS0A9DD Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS18ZC12 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1265 Score = 50.1 bits (25), Expect = 0.003 Identities = 31/33 (93%) Strand = Plus / Minus Query: 113 tcagtacttgtagtccttgacgtgaaggctctc 145 |||||||||||| ||||| |||||||||||||| Sbjct: 1108 tcagtacttgtaatccttaacgtgaaggctctc 1076
>emb|BX823677.1|CNS0A7G9 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS65ZH11 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1388 Score = 50.1 bits (25), Expect = 0.003 Identities = 31/33 (93%) Strand = Plus / Minus Query: 113 tcagtacttgtagtccttgacgtgaaggctctc 145 |||||||||||| ||||| |||||||||||||| Sbjct: 1148 tcagtacttgtaatccttcacgtgaaggctctc 1116
>gb|AY087346.1| Arabidopsis thaliana clone 3447 mRNA, complete sequence Length = 1378 Score = 50.1 bits (25), Expect = 0.003 Identities = 31/33 (93%) Strand = Plus / Minus Query: 113 tcagtacttgtagtccttgacgtgaaggctctc 145 |||||||||||| ||||| |||||||||||||| Sbjct: 1145 tcagtacttgtaatccttcacgtgaaggctctc 1113
>gb|AY085249.1| Arabidopsis thaliana clone 141747 mRNA, complete sequence Length = 1488 Score = 50.1 bits (25), Expect = 0.003 Identities = 28/29 (96%) Strand = Plus / Minus Query: 120 ttgtagtccttgacgtgaaggctctcgga 148 |||||||| |||||||||||||||||||| Sbjct: 1243 ttgtagtctttgacgtgaaggctctcgga 1215
>gb|AY085114.1| Arabidopsis thaliana clone 13024 mRNA, complete sequence Length = 1298 Score = 50.1 bits (25), Expect = 0.003 Identities = 31/33 (93%) Strand = Plus / Minus Query: 113 tcagtacttgtagtccttgacgtgaaggctctc 145 |||||||||||| ||||| |||||||||||||| Sbjct: 1140 tcagtacttgtaatccttaacgtgaaggctctc 1108
>gb|AF154648.1| Nicotiana tabacum clone PR33 mRNA sequence Length = 1313 Score = 46.1 bits (23), Expect = 0.041 Identities = 38/43 (88%) Strand = Plus / Plus Query: 115 agtacttgtagtccttgacgtgaaggctctcggaggcgccctc 157 ||||||||||||||||||| ||| | |||||||| || ||||| Sbjct: 199 agtacttgtagtccttgacatgacgactctcggaagcaccctc 241
>dbj|D11137.1|RICGE1 Oryza sativa (japonica cultivar-group) mRNA of strong gravity stress responsible gene, complete cds Length = 586 Score = 44.1 bits (22), Expect = 0.16 Identities = 38/41 (92%), Gaps = 3/41 (7%) Strand = Plus / Plus Query: 111 aatcagtacttgtagtccttgacgtgaaggctctcggaggc 151 |||||||||||||||| |||||||||| |||||||||||| Sbjct: 207 aatcagtacttgtagt-cttgacgtga--gctctcggaggc 244
>gb|S56877.1| gravity specific cDNA {clone GSC233} [Oryza sativa, Nipponbare, suspension callus, mRNA, 606 nt] Length = 606 Score = 44.1 bits (22), Expect = 0.16 Identities = 38/41 (92%), Gaps = 3/41 (7%) Strand = Plus / Plus Query: 111 aatcagtacttgtagtccttgacgtgaaggctctcggaggc 151 |||||||||||||||| |||||||||| |||||||||||| Sbjct: 207 aatcagtacttgtagt-cttgacgtga--gctctcggaggc 244
>gb|AC113342.2| Homo sapiens chromosome 5 clone CTD-2344D1, complete sequence Length = 100133 Score = 42.1 bits (21), Expect = 0.63 Identities = 21/21 (100%) Strand = Plus / Plus Query: 38 aggactctgaaaaccaaacaa 58 ||||||||||||||||||||| Sbjct: 85413 aggactctgaaaaccaaacaa 85433
>gb|AC092271.3| Homo sapiens chromosome 5 clone CTC-305H13, complete sequence Length = 84971 Score = 42.1 bits (21), Expect = 0.63 Identities = 21/21 (100%) Strand = Plus / Minus Query: 38 aggactctgaaaaccaaacaa 58 ||||||||||||||||||||| Sbjct: 54918 aggactctgaaaaccaaacaa 54898
>emb|AL591411.14| Mouse DNA sequence from clone RP23-428M13 on chromosome 2, complete sequence Length = 155889 Score = 42.1 bits (21), Expect = 0.63 Identities = 24/25 (96%) Strand = Plus / Minus Query: 84 acgggccacagcaacccaacgcaga 108 |||||||||||||||||||| |||| Sbjct: 109737 acgggccacagcaacccaacacaga 109713
>ref|NM_178890.3| Mus musculus ankyrin repeat and BTB (POZ) domain containing 2 (Abtb2), mRNA Length = 4595 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 138 aggctctcggaggcgccctc 157 |||||||||||||||||||| Sbjct: 326 aggctctcggaggcgccctc 307
>gb|AY496708.1| Pandanus amaryllifolius fructose-bisphosphate aldolase (FBA) mRNA, complete cds Length = 1077 Score = 40.1 bits (20), Expect = 2.5 Identities = 29/32 (90%) Strand = Plus / Minus Query: 117 tacttgtagtccttgacgtgaaggctctcgga 148 ||||||||||||||||| || | ||||||||| Sbjct: 1073 tacttgtagtccttgacatgcaagctctcgga 1042
>gb|AC133139.23| Medicago truncatula clone mth1-8d23, complete sequence Length = 121016 Score = 40.1 bits (20), Expect = 2.5 Identities = 35/40 (87%) Strand = Plus / Plus Query: 112 atcagtacttgtagtccttgacgtgaaggctctcggaggc 151 |||| |||||||||||||| || ||||| ||||| ||||| Sbjct: 72431 atcaatacttgtagtccttaacatgaagactctctgaggc 72470
>gb|BC054399.1| Mus musculus ankyrin repeat and BTB (POZ) domain containing 2, mRNA (cDNA clone MGC:62845 IMAGE:6493840), complete cds Length = 4595 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 138 aggctctcggaggcgccctc 157 |||||||||||||||||||| Sbjct: 326 aggctctcggaggcgccctc 307
>gb|AC122727.24| Medicago truncatula clone mth2-13b8, complete sequence Length = 128564 Score = 40.1 bits (20), Expect = 2.5 Identities = 35/40 (87%) Strand = Plus / Minus Query: 112 atcagtacttgtagtccttgacgtgaaggctctcggaggc 151 |||| |||||||||||||| || ||||| ||||| ||||| Sbjct: 56136 atcaatacttgtagtccttaacatgaagactctctgaggc 56097
>ref|NM_134403.1| Rattus norvegicus ankyrin repeat and BTB (POZ) domain containing 2 (Abtb2), mRNA Length = 4514 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 138 aggctctcggaggcgccctc 157 |||||||||||||||||||| Sbjct: 324 aggctctcggaggcgccctc 305
>dbj|AK151620.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830032E09 product:CCA3 homolog [Rattus norvegicus], full insert sequence Length = 4553 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 138 aggctctcggaggcgccctc 157 |||||||||||||||||||| Sbjct: 322 aggctctcggaggcgccctc 303
>dbj|AK152163.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830052P10 product:CCA3 homolog [Rattus norvegicus], full insert sequence Length = 4553 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 138 aggctctcggaggcgccctc 157 |||||||||||||||||||| Sbjct: 322 aggctctcggaggcgccctc 303
>dbj|AK170569.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630108G16 product:CCA3 homolog [Rattus norvegicus], full insert sequence Length = 4555 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 138 aggctctcggaggcgccctc 157 |||||||||||||||||||| Sbjct: 325 aggctctcggaggcgccctc 306
>gb|AC157328.2| Mus musculus BAC clone RP23-230P11 from chromosome 9, complete sequence Length = 206694 Score = 40.1 bits (20), Expect = 2.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 45 tgaaaaccaaacaatgatactggt 68 ||||||| |||||||||||||||| Sbjct: 56439 tgaaaacgaaacaatgatactggt 56462
>dbj|AK042322.1| Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A630082F15 product:CCA3 homolog [Rattus norvegicus], full insert sequence Length = 4558 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 138 aggctctcggaggcgccctc 157 |||||||||||||||||||| Sbjct: 324 aggctctcggaggcgccctc 305
>emb|AL773505.5| Mouse DNA sequence from clone RP23-209M19 on chromosome 2, complete sequence Length = 190991 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 138 aggctctcggaggcgccctc 157 |||||||||||||||||||| Sbjct: 119886 aggctctcggaggcgccctc 119867
>dbj|AB000216.1| Rattus norvegicus mRNA for CCA3, complete cds Length = 4514 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 138 aggctctcggaggcgccctc 157 |||||||||||||||||||| Sbjct: 324 aggctctcggaggcgccctc 305
>gb|AC182749.2| Mus musculus BAC clone RP23-464D14 from chromosome 17, complete sequence Length = 211198 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 45 tgaaaaccaaacaatgata 63 ||||||||||||||||||| Sbjct: 195001 tgaaaaccaaacaatgata 194983
>gb|AC130817.4| Mus musculus BAC clone RP23-68J13 from 16, complete sequence Length = 193917 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 34 tctcaggactctgaaaacc 52 ||||||||||||||||||| Sbjct: 52024 tctcaggactctgaaaacc 52006
>emb|Z93242.1|HS389A20 Human DNA sequence from clone RP3-389A20 on chromosome Xp22.11-22.2 Contains a calcium binding protein P22 (CHP)pseudogene, a novel gene, the 3' end of the NHS gene for Nance-Horan syndrome (congenital cataracts and dental anomalies), the SCML1 gene for sex comb on midleg-like 1 (Drosophila), a novel pseudogene and the RAI2 gene for retinoic acid induced 2, complete sequence Length = 208609 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 41 actctgaaaaccaaacaat 59 ||||||||||||||||||| Sbjct: 175149 actctgaaaaccaaacaat 175167
>emb|AL359076.16| Human DNA sequence from clone RP11-264I13 on chromosome 9 Contains the 5' end of the SMARCA2 gene for SWI/SNF related matrix associated actin dependent regulator of chromatin subfamily a member 2 (SNF2LA), a novel gene and two CpG islands, complete sequence Length = 138859 Score = 38.2 bits (19), Expect = 9.9 Identities = 25/27 (92%) Strand = Plus / Plus Query: 37 caggactctgaaaaccaaacaatgata 63 ||||||||||| ||||||| ||||||| Sbjct: 68347 caggactctgataaccaaataatgata 68373
>emb|AL138771.10| Human DNA sequence from clone RP4-542G16 on chromosome 10 Contains part of the gene for a novel protein (KIAA1617), complete sequence Length = 29145 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 53 aaacaatgatactggtaag 71 ||||||||||||||||||| Sbjct: 18301 aaacaatgatactggtaag 18319
>ref|XM_965095.1| PREDICTED: Tribolium castaneum similar to CG14457-PB, isoform B (LOC658733), mRNA Length = 405 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 161 aagggtggcgtcgcccttg 179 ||||||||||||||||||| Sbjct: 87 aagggtggcgtcgcccttg 69
>dbj|AK041486.1| Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A630014I05 product:CCA3 homolog [Rattus norvegicus], full insert sequence Length = 2848 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 138 aggctctcggaggcgccct 156 ||||||||||||||||||| Sbjct: 326 aggctctcggaggcgccct 308
>emb|BX323807.8| Zebrafish DNA sequence from clone DKEY-154P10 in linkage group 2, complete sequence Length = 194313 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 146 ggaggcgccctcgccaagg 164 ||||||||||||||||||| Sbjct: 70775 ggaggcgccctcgccaagg 70757
>gb|CP000009.1| Gluconobacter oxydans 621H, complete genome Length = 2702173 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 125 gtccttgacgtgaaggctc 143 ||||||||||||||||||| Sbjct: 1938171 gtccttgacgtgaaggctc 1938189
>emb|AL117356.5|CNS01DRK Human chromosome 14 DNA sequence BAC R-606A16 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 178062 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 42 ctctgaaaaccaaacaatg 60 ||||||||||||||||||| Sbjct: 62894 ctctgaaaaccaaacaatg 62876
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 38.2 bits (19), Expect = 9.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 151 cgccctcgccaagggtggcgtcg 173 |||||||||| |||||||||||| Sbjct: 4509740 cgccctcgcccagggtggcgtcg 4509718
>gb|AC173477.2| Mus musculus BAC clone RP24-344P5 from chromosome 17, complete sequence Length = 155999 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 45 tgaaaaccaaacaatgata 63 ||||||||||||||||||| Sbjct: 74274 tgaaaaccaaacaatgata 74256
>gb|AC102620.11| Mus musculus chromosome 5, clone RP23-429E19, complete sequence Length = 208435 Score = 38.2 bits (19), Expect = 9.9 Identities = 25/27 (92%) Strand = Plus / Plus Query: 47 aaaaccaaacaatgatactggtaagcg 73 ||||| ||||||||| ||||||||||| Sbjct: 86927 aaaacaaaacaatgaaactggtaagcg 86953 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,178,576 Number of Sequences: 3902068 Number of extensions: 1178576 Number of successful extensions: 71263 Number of sequences better than 10.0: 95 Number of HSP's better than 10.0 without gapping: 93 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 71025 Number of HSP's gapped (non-prelim): 240 length of query: 199 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 177 effective length of database: 17,147,199,772 effective search space: 3035054359644 effective search space used: 3035054359644 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)
