ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet99f08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DCAM_HORCH (Q42829) S-adenosylmethionine decarboxylase proenzyme... 64 7e-11
2DCAM_MAIZE (O24575) S-adenosylmethionine decarboxylase proenzyme... 33 0.24
3DCAM_ORYSA (O24215) S-adenosylmethionine decarboxylase proenzyme... 29 2.6
4SMI1_YARLI (Q6CDX0) KNR4/SMI1 homolog 28 5.9

>DCAM_HORCH (Q42829) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)|
           (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine
           decarboxylase alpha chain; S-adenosylmethionine
           decarboxylase beta chain]
          Length = 393

 Score = 64.3 bits (155), Expect = 7e-11
 Identities = 32/36 (88%), Positives = 34/36 (94%), Gaps = 2/36 (5%)
 Frame = -1

Query: 304 VESGHPLVKEGKLANLLAWRAEEDSLEE--GAVLCE 203
           VESGHPLVKEGKLANLLAWRAEE+SLEE  GA+LCE
Sbjct: 358 VESGHPLVKEGKLANLLAWRAEEESLEEGTGALLCE 393



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>DCAM_MAIZE (O24575) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)|
           (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine
           decarboxylase alpha chain; S-adenosylmethionine
           decarboxylase beta chain]
          Length = 400

 Score = 32.7 bits (73), Expect = 0.24
 Identities = 14/25 (56%), Positives = 18/25 (72%)
 Frame = -1

Query: 289 PLVKEGKLANLLAWRAEEDSLEEGA 215
           P+ K+ KLANLL W  E D++EE A
Sbjct: 371 PMKKDYKLANLLCWEEEADAMEEKA 395



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>DCAM_ORYSA (O24215) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)|
           (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine
           decarboxylase alpha chain; S-adenosylmethionine
           decarboxylase beta chain]
          Length = 398

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 15/21 (71%), Positives = 16/21 (76%)
 Frame = -1

Query: 283 VKEGKLANLLAWRAEEDSLEE 221
           VKEGKL NLL W   ED+LEE
Sbjct: 373 VKEGKLGNLLPW--GEDALEE 391



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>SMI1_YARLI (Q6CDX0) KNR4/SMI1 homolog|
          Length = 713

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 295 GHPLVKEGKLANLLAWRAEEDSLEEGAV 212
           G P+    +  N+ +W A +DS+ EGAV
Sbjct: 270 GSPVASVARQKNISSWLASQDSVPEGAV 297


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,177,350
Number of Sequences: 219361
Number of extensions: 539181
Number of successful extensions: 1396
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1396
length of database: 80,573,946
effective HSP length: 76
effective length of database: 63,902,510
effective search space used: 1533660240
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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