Clone Name | rbaet99f08 |
---|---|
Clone Library Name | barley_pub |
>emb|X83881.1|HCTTSAMDC H.chilense x T.turgidum conv. durum (Tritordeum) mRNA for S-adenosylmethionine decarboxylase Length = 1893 Score = 391 bits (197), Expect = e-106 Identities = 280/305 (91%), Gaps = 12/305 (3%) Strand = Plus / Minus Query: 9 tgcttatttataagttgtgacagattttctccaaacagtacgctcattgtggcagacgca 68 ||||||||||||||||||| || | |||||||||||||| ||||||||||||||||||| Sbjct: 1885 tgcttatttataagttgtgccaactcttctccaaacagtatgctcattgtggcagacgca 1826 Query: 69 gcaaaccacctagagctaatagtttattcagagtagcaatagcctggccggctgcttcac 128 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1825 gcaaaccacctagagctaatagtttattcagagtagcaatagcctggccggctgcttcac 1766 Query: 129 agtaaccaaaacgacaaacg---gaagtcagaacgaattccacagacggaacagcgacag 185 ||||||| ||||||| ||| |||||||||||||| |||||||||||||||||||| Sbjct: 1765 agtaacc-aaacgacgcacgacaacagtcagaacgaattacacagacggaacagcgacag 1707 Query: 186 caaaaatcatcttatcactcgcacagcaccgc------gccctcctccagagaatcctcc 239 | ||||||||||||||||||||||||| ||| ||||||||| ||||| |||||| Sbjct: 1706 c--aaatcatcttatcactcgcacagcaacgcgcctgtgccctcctcgagagactcctcc 1649 Query: 240 tccgcccgccatgcgagcaggttggcaagcttgccttccttgaccagagggtggccgctc 299 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1648 tccgcccgccatgcgagcaggttggcaagcttgccttccttgaccagagggtggccgctc 1589 Query: 300 tccac 304 ||||| Sbjct: 1588 tccac 1584
>gb|AF117660.1|AF117660 Triticum aestivum S-adenosylmethionine decarboxylase precursor, mRNA, complete cds Length = 1386 Score = 293 bits (148), Expect = 2e-76 Identities = 208/223 (93%), Gaps = 5/223 (2%) Strand = Plus / Minus Query: 73 accacctagagctaatagtttattcagagtagcaatagcctggccggctgcttcacagta 132 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 1378 accacctagagctaatagtttattcagag-agcaatagcctggccggctgcttcacagta 1320 Query: 133 accaaaacgacaaacgga-agtcagaacgaattccacagacggaacagcgacagcaaaaa 191 |||||| |||||||| || ||||||||| ||||||||||| |||| |||||||||||| Sbjct: 1319 accaaa-cgacaaactgacagtcagaacaaattccacagatggaatagcgacagcaaa-- 1263 Query: 192 tcatcttatcactcgcacagcaccgcgccctcctccagagaatcctcctccgcccgccat 251 |||| | |||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 1262 tcatgtcttcactcgcacagcaccgcgccctcttccagagaatcctcctccgcccgccat 1203 Query: 252 gcgagcaggttggcaagcttgccttccttgaccagagggtggc 294 ||||| |||||||| |||||||||||||||||||||||||||| Sbjct: 1202 gcgaggaggttggcgagcttgccttccttgaccagagggtggc 1160
>emb|AL606594.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0029H02, complete sequence Length = 173171 Score = 56.0 bits (28), Expect = 7e-05 Identities = 34/36 (94%) Strand = Plus / Minus Query: 50 gctcattgtggcagacgcagcaaaccacctagagct 85 ||||||||||||||||||||| ||||||||||||| Sbjct: 13891 gctcattgtggcagacgcagctgaccacctagagct 13856 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 106 aatagcctggccggctgcttcacag 130 ||||||||||| ||||||||||||| Sbjct: 13782 aatagcctggctggctgcttcacag 13758
>emb|Y07766.2|OSSADMEDC O.sativa mRNA for S-adenosylmethionine decarboxylase Length = 2036 Score = 56.0 bits (28), Expect = 7e-05 Identities = 34/36 (94%) Strand = Plus / Minus Query: 50 gctcattgtggcagacgcagcaaaccacctagagct 85 ||||||||||||||||||||| ||||||||||||| Sbjct: 1950 gctcattgtggcagacgcagctgaccacctagagct 1915 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 106 aatagcctggccggctgcttcacag 130 ||||||||||| ||||||||||||| Sbjct: 1841 aatagcctggctggctgcttcacag 1817
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 56.0 bits (28), Expect = 7e-05 Identities = 34/36 (94%) Strand = Plus / Minus Query: 50 gctcattgtggcagacgcagcaaaccacctagagct 85 ||||||||||||||||||||| ||||||||||||| Sbjct: 24893306 gctcattgtggcagacgcagctgaccacctagagct 24893271 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 106 aatagcctggccggctgcttcacag 130 ||||||||||| ||||||||||||| Sbjct: 24893197 aatagcctggctggctgcttcacag 24893173
>gb|AF067194.1|AF067194 Oryza sativa S-adenosylmethionine decarboxylase mRNA, complete cds Length = 1560 Score = 56.0 bits (28), Expect = 7e-05 Identities = 34/36 (94%) Strand = Plus / Minus Query: 50 gctcattgtggcagacgcagcaaaccacctagagct 85 ||||||||||||||||||||| ||||||||||||| Sbjct: 1501 gctcattgtggcagacgcagctgaccacctagagct 1466 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 106 aatagcctggccggctgcttcacag 130 ||||||||||| ||||||||||||| Sbjct: 1392 aatagcctggctggctgcttcacag 1368
>dbj|AK100589.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023106D22, full insert sequence Length = 2063 Score = 56.0 bits (28), Expect = 7e-05 Identities = 34/36 (94%) Strand = Plus / Minus Query: 50 gctcattgtggcagacgcagcaaaccacctagagct 85 ||||||||||||||||||||| ||||||||||||| Sbjct: 1994 gctcattgtggcagacgcagctgaccacctagagct 1959 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 106 aatagcctggccggctgcttcacag 130 ||||||||||| ||||||||||||| Sbjct: 1885 aatagcctggctggctgcttcacag 1861
>dbj|AK098918.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002M21, full insert sequence Length = 2059 Score = 56.0 bits (28), Expect = 7e-05 Identities = 34/36 (94%) Strand = Plus / Minus Query: 50 gctcattgtggcagacgcagcaaaccacctagagct 85 ||||||||||||||||||||| ||||||||||||| Sbjct: 1994 gctcattgtggcagacgcagctgaccacctagagct 1959 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 106 aatagcctggccggctgcttcacag 130 ||||||||||| ||||||||||||| Sbjct: 1885 aatagcctggctggctgcttcacag 1861
>dbj|AK072162.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013129L10, full insert sequence Length = 2711 Score = 56.0 bits (28), Expect = 7e-05 Identities = 34/36 (94%) Strand = Plus / Minus Query: 50 gctcattgtggcagacgcagcaaaccacctagagct 85 ||||||||||||||||||||| ||||||||||||| Sbjct: 1994 gctcattgtggcagacgcagctgaccacctagagct 1959 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 106 aatagcctggccggctgcttcacag 130 ||||||||||| ||||||||||||| Sbjct: 1885 aatagcctggctggctgcttcacag 1861
>dbj|AK067166.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013096P09, full insert sequence Length = 2063 Score = 56.0 bits (28), Expect = 7e-05 Identities = 34/36 (94%) Strand = Plus / Minus Query: 50 gctcattgtggcagacgcagcaaaccacctagagct 85 ||||||||||||||||||||| ||||||||||||| Sbjct: 1994 gctcattgtggcagacgcagctgaccacctagagct 1959 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 106 aatagcctggccggctgcttcacag 130 ||||||||||| ||||||||||||| Sbjct: 1885 aatagcctggctggctgcttcacag 1861
>dbj|AK062001.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-043-D05, full insert sequence Length = 1217 Score = 56.0 bits (28), Expect = 7e-05 Identities = 34/36 (94%) Strand = Plus / Minus Query: 50 gctcattgtggcagacgcagcaaaccacctagagct 85 ||||||||||||||||||||| ||||||||||||| Sbjct: 1152 gctcattgtggcagacgcagctgaccacctagagct 1117 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 106 aatagcctggccggctgcttcacag 130 ||||||||||| ||||||||||||| Sbjct: 1043 aatagcctggctggctgcttcacag 1019
>emb|AL442115.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0711G06, complete sequence Length = 148644 Score = 56.0 bits (28), Expect = 7e-05 Identities = 34/36 (94%) Strand = Plus / Minus Query: 50 gctcattgtggcagacgcagcaaaccacctagagct 85 ||||||||||||||||||||| ||||||||||||| Sbjct: 13919 gctcattgtggcagacgcagctgaccacctagagct 13884 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 106 aatagcctggccggctgcttcacag 130 ||||||||||| ||||||||||||| Sbjct: 13810 aatagcctggctggctgcttcacag 13786
>emb|AL606627.3|OSJN00052 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0067K08, complete sequence Length = 170765 Score = 56.0 bits (28), Expect = 7e-05 Identities = 34/36 (94%) Strand = Plus / Minus Query: 50 gctcattgtggcagacgcagcaaaccacctagagct 85 ||||||||||||||||||||| ||||||||||||| Sbjct: 155022 gctcattgtggcagacgcagctgaccacctagagct 154987 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 106 aatagcctggccggctgcttcacag 130 ||||||||||| ||||||||||||| Sbjct: 154913 aatagcctggctggctgcttcacag 154889
>gb|BT016840.1| Zea mays clone Contig673 mRNA sequence Length = 1866 Score = 48.1 bits (24), Expect = 0.016 Identities = 33/36 (91%) Strand = Plus / Plus Query: 50 gctcattgtggcagacgcagcaaaccacctagagct 85 ||||||||||| ||||||||| ||||||||||||| Sbjct: 109 gctcattgtggtagacgcagctgaccacctagagct 144
>emb|Y07767.1|ZMSADMEDC Z.mays mRNA for S-adenosylmethionine decarboxylase Length = 1873 Score = 48.1 bits (24), Expect = 0.016 Identities = 33/36 (91%) Strand = Plus / Minus Query: 50 gctcattgtggcagacgcagcaaaccacctagagct 85 ||||||||||| ||||||||| ||||||||||||| Sbjct: 1789 gctcattgtggtagacgcagctgaccacctagagct 1754
>gb|AY103590.1| Zea mays PCO098412 mRNA sequence Length = 2400 Score = 48.1 bits (24), Expect = 0.016 Identities = 33/36 (91%) Strand = Plus / Minus Query: 50 gctcattgtggcagacgcagcaaaccacctagagct 85 ||||||||||| ||||||||| ||||||||||||| Sbjct: 2038 gctcattgtggtagacgcagctgaccacctagagct 2003
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 46.1 bits (23), Expect = 0.065 Identities = 26/27 (96%) Strand = Plus / Plus Query: 58 tggcagacgcagcaaaccacctagagc 84 ||||||||||||||||||| ||||||| Sbjct: 15331175 tggcagacgcagcaaaccatctagagc 15331201
>dbj|AP005420.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0418B08 Length = 165909 Score = 46.1 bits (23), Expect = 0.065 Identities = 26/27 (96%) Strand = Plus / Plus Query: 58 tggcagacgcagcaaaccacctagagc 84 ||||||||||||||||||| ||||||| Sbjct: 110364 tggcagacgcagcaaaccatctagagc 110390
>dbj|AB122089.1| Oryza sativa (japonica cultivar-group) SAMDC1 gene for S-adenosylmethionine decarboxylase, complete cds Length = 2952 Score = 46.1 bits (23), Expect = 0.065 Identities = 26/27 (96%) Strand = Plus / Minus Query: 58 tggcagacgcagcaaaccacctagagc 84 ||||||||||||||||||| ||||||| Sbjct: 2817 tggcagacgcagcaaaccatctagagc 2791
>dbj|AK102445.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033093N21, full insert sequence Length = 2047 Score = 46.1 bits (23), Expect = 0.065 Identities = 26/27 (96%) Strand = Plus / Minus Query: 58 tggcagacgcagcaaaccacctagagc 84 ||||||||||||||||||| ||||||| Sbjct: 1917 tggcagacgcagcaaaccatctagagc 1891
>dbj|AK101535.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033048C18, full insert sequence Length = 2002 Score = 46.1 bits (23), Expect = 0.065 Identities = 26/27 (96%) Strand = Plus / Minus Query: 58 tggcagacgcagcaaaccacctagagc 84 ||||||||||||||||||| ||||||| Sbjct: 1918 tggcagacgcagcaaaccatctagagc 1892
>dbj|AK100397.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023086M03, full insert sequence Length = 2546 Score = 46.1 bits (23), Expect = 0.065 Identities = 26/27 (96%) Strand = Plus / Minus Query: 58 tggcagacgcagcaaaccacctagagc 84 ||||||||||||||||||| ||||||| Sbjct: 2443 tggcagacgcagcaaaccatctagagc 2417
>dbj|AK067682.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116D10, full insert sequence Length = 2034 Score = 46.1 bits (23), Expect = 0.065 Identities = 26/27 (96%) Strand = Plus / Minus Query: 58 tggcagacgcagcaaaccacctagagc 84 ||||||||||||||||||| ||||||| Sbjct: 1917 tggcagacgcagcaaaccatctagagc 1891
>gb|AY032614.1| Triticum aestivum receptor-like kinase (Wrlk-S3-9) gene, partial cds Length = 2389 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Plus Query: 18 ataagttgtgacagattttctc 39 |||||||||||||||||||||| Sbjct: 1265 ataagttgtgacagattttctc 1286
>gb|AF325197.1|AF325197 Triticum aestivum LRK33 (Lrk33) and TAK33 (Tak33) genes, complete cds Length = 20754 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Minus Query: 18 ataagttgtgacagattttctc 39 |||||||||||||||||||||| Sbjct: 8297 ataagttgtgacagattttctc 8276
>gb|AF325196.1|AF325196 Triticum aestivum PST19 (Pst19), LRR19 (Lrr19), TAK19-1 (Tak19-1), and LRK19 (Lrk19) genes, complete cds Length = 35872 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Plus Query: 18 ataagttgtgacagattttctc 39 |||||||||||||||||||||| Sbjct: 29615 ataagttgtgacagattttctc 29636
>emb|CR847994.10| Zebrafish DNA sequence from clone CH211-203H15 in linkage group 4, complete sequence Length = 100991 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Plus Query: 23 ttgtgacagattttctccaaac 44 |||||||||||||||||||||| Sbjct: 68540 ttgtgacagattttctccaaac 68561
>gb|AC125203.3| Mus musculus BAC clone RP23-233M21 from 19, complete sequence Length = 191540 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 271 tgccttccttgaccagagggt 291 ||||||||||||||||||||| Sbjct: 51033 tgccttccttgaccagagggt 51053
>emb|AL591979.1| Listeria monocytogenes strain EGD, complete genome, segment 7/12 Length = 240050 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 225 tccagagaatcctcctccgcc 245 ||||||||||||||||||||| Sbjct: 94892 tccagagaatcctcctccgcc 94912
>dbj|AB023064.1| Listeria monocytogenes DNA for DnaK operon, complete cds Length = 8881 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 225 tccagagaatcctcctccgcc 245 ||||||||||||||||||||| Sbjct: 4201 tccagagaatcctcctccgcc 4181
>emb|AL158077.15| Human DNA sequence from clone RP11-471J7 on chromosome 9 Contains the 5' end of the SLC24A2 gene for solute carrier family 24 (sodium/potassium/calcium exchanger), member 2 (NCKX2) and a CpG island, complete sequence Length = 159900 Score = 40.1 bits (20), Expect = 4.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 14 atttataagttgtgacagattttctcca 41 |||| ||||||||||||| ||||||||| Sbjct: 129003 atttttaagttgtgacagtttttctcca 129030
>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome Length = 3052398 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 254 gagcaggttggcaagcttgc 273 |||||||||||||||||||| Sbjct: 494503 gagcaggttggcaagcttgc 494484
>emb|AJ698342.1| Megathura crenulata KLH2 gene for hemocyanin 2, exons 1-17 Length = 24990 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 tgcttcacagtaaccaaaac 140 |||||||||||||||||||| Sbjct: 19045 tgcttcacagtaaccaaaac 19064
>emb|AL591222.2|HS378I6 Homo sapiens chromosome 9 BAC RP11-378I6, complete sequence Length = 147211 Score = 40.1 bits (20), Expect = 4.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 14 atttataagttgtgacagattttctcca 41 |||| ||||||||||||| ||||||||| Sbjct: 2513 atttttaagttgtgacagtttttctcca 2540 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,522,841 Number of Sequences: 3902068 Number of extensions: 2522841 Number of successful extensions: 69289 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 34 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 69178 Number of HSP's gapped (non-prelim): 107 length of query: 304 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 282 effective length of database: 17,147,199,772 effective search space: 4835510335704 effective search space used: 4835510335704 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)