ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet99f07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1UREE_YERFR (Q6UR67) Urease accessory protein ureE 29 2.9
2CYP4_CAEEL (P52012) Peptidyl-prolyl cis-trans isomerase 4 (EC 5.... 29 3.8

>UREE_YERFR (Q6UR67) Urease accessory protein ureE|
          Length = 239

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +1

Query: 37  SHFHDSKFKTHRLLNGHSHSH 99
           SH HDS   +H   +GHSHSH
Sbjct: 210 SHSHDSHSHSHDSDHGHSHSH 230



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>CYP4_CAEEL (P52012) Peptidyl-prolyl cis-trans isomerase 4 (EC 5.2.1.8)|
           (PPIase) (Rotamase) (Cyclophilin-4) (Cyclophilin mog-6)
           (Masculinisation of germline protein 6)
          Length = 523

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +3

Query: 99  HSTTTLHRLVIYLSHVSGDPLVAGDGGLDVLDTPVGD 209
           ++ T  HRL+       GDP   G GG  + D P  D
Sbjct: 316 YNNTKFHRLIKNFMLQGGDPTGTGHGGESIWDKPFSD 352


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,900,178
Number of Sequences: 219361
Number of extensions: 468505
Number of successful extensions: 1586
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1586
length of database: 80,573,946
effective HSP length: 45
effective length of database: 70,702,701
effective search space used: 1696864824
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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